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Long-term proton pump inhibitor therapy in daily clinical practice – balancing benefits and potential risks: a narrative review. Cover

Long-term proton pump inhibitor therapy in daily clinical practice – balancing benefits and potential risks: a narrative review.

Open Access
|Sep 2026

Figures & Tables

Table 1.

Summary of indications for PPI therapy with key treatment benefits and recommended duration. Own work based on the compiled literature.

Clinical IndicationMain Objective and Benefit of TherapyRecommended Duration / Dosage
Severe forms of GERD (Esophagitis grades C and D according to the Los Angeles classification)Prevention of painful recurrence of erosive lesions, ulcers, bleeding, and peptic strictures of the esophagus.Often indefinite therapy; aiming for the lowest effective dose to control symptoms.
Barrett’s esophagusEffective reflux control, chemopreventive effect – reduction in the risk of progression to high-grade dysplasia (HGD) and esophageal adenocarcinoma (EAC).Long-term and indefinite therapy; typically once-daily dosing (intensification considered if symptoms are uncontrolled).
Hypersecretory states (e.g., Zollinger-Ellison syndrome)Normalization of pathological hydrochloric acid production; healing of multiple ulcers, and suppression of secretory diarrhea.Lifelong therapy; required doses are significantly higher than standard, individually tailored.
Gastroprotection (NSAIDs / Anticoagulants)Protection of the gastric and duodenal mucosa, and reduction of the risk of upper gastrointestinal bleeding by approx. 33%.Therapy continued as long as the exposure to mucosal-damaging drugs persists in high-risk patients.
Table 2.

Multi-organ profile of potential complications and adverse effects associated with long-term use of proton pump inhibitors (PPIs). Own work based on the compiled literature.

System / OrganMain ComplicationPathophysiological MechanismClinical Management
Electrolyte and vitamin balanceDeficiencies in vitamin B12, iron, magnesium, and calciumIatrogenic hypochlorhydria; impaired release from dietary proteins, impaired ion reduction, and blockade of TRPM6/7 channelsPeriodic monitoring of serum levels; in the case of calcium, use of calcium citrate instead of calcium carbonate
Skeletal systemOsteoporosis, low-energy fracturesSecondary hyperparathyroidism (induced by hypocalcemia), direct cellular effect on osteoclastsNo routine DEXA scan for every patient; screening indicated in the presence of additional risk factors
Gastrointestinal tract (microbiome)C. difficile infections, SIBO syndromeLoss of the gastric bactericidal barrier, facilitated migration and colonization of pathogensSpecial caution in hospitalized patients and those receiving antibiotic therapy
Excretory system (kidneys)Acute interstitial nephritis (AIN), CKDAsymptomatic idiosyncratic (immunological) reaction leading to organ fibrosisRoutine, periodic monitoring of serum creatinine levels and calculation of eGFR
Gastric mucosaFundic gland polyps (FGP)Trophic effect of hypergastrinemia on parietal and ECL cellsLesions are mostly benign, requiring only endoscopic surveillance
Drug-drug interactionsDecreased efficacy of clopidogrel, levothyroxine, and antifungal agentsInhibition of the hepatic CYP2C19 isoenzyme or impaired drug solubility due to elevated gastric pHSelection of PPIs with weaker affinity for CYP2C19 (e.g., pantoprazole); monitoring of TSH levels
Figure 1.

Pathophysiological and clinical scheme of the “vicious cycle” of chronic proton pump inhibitor use induced by rebound acid hypersecretion (RAHS). Own work based on the compiled literature.

Table 3.

Patient qualification criteria for therapy continuation or a trial of de-escalation. Own work based on current guidelines from the American Gastroenterological Association[27–28].

Absolute Indications for Long-Term PPI TherapyClinical Scenarios Justifying a Deprescribing Trial
Barrett’s esophagusNon-erosive reflux disease (NERD) or mild esophagitis (grade A or B according to the Los Angeles classification)
Severe reflux esophagitis (grade C or D according to the Los Angeles classification)Status post successful Helicobacter pylori eradication
History of upper gastrointestinal bleeding due to peptic ulcer diseaseCompleted treatment for an uncomplicated peptic ulcer
Eosinophilic esophagitisDiscontinuation of NSAID therapy (if PPI was used only for gastroprotection)
Gastric acid hypersecretory states (e.g., Zollinger-Ellison syndrome)Functional dyspepsia (no abnormalities on endoscopic examination)
Chronic and uninterrupted NSAID therapy in patients at high risk of gastrointestinal bleedingNo documented indications for therapy (PPI initiated empirically without a full diagnostic workup)
Figure 2.

Algorithm for safe de-escalation and deprescribing of chronic proton pump inhibitor (PPI) therapy. Own work based on the guidelines [27–28].

DOI: https://doi.org/10.2478/bgbl-2026-0015 | Journal eISSN: 2956-6851 | Journal ISSN: 0373-174X
Language: English, Polish
Page range: 65 - 85
Submitted on: Aug 22, 2026
Accepted on: Aug 28, 2026
Published on: Sep 18, 2026
Published by: The Medical Library named after S. Konopka in Warsaw
In partnership with: Paradigm Publishing Services
Publication frequency: 2 issues per year

© 2026 Paulina Głowacka, Aleksandra Bartkowska, Paulina Orzechowska, Gabriela Mastej-Witek, Alicja Okupniak, Gabriela Budziszewska, Mateusz Nieczyporuk, Aneta Dziurdź, Aleksandra Łupicka, Monika Ziemba, published by The Medical Library named after S. Konopka in Warsaw
This work is licensed under the Creative Commons Attribution-NonCommercial 4.0 License.