Morphological and molecular characterization of Pratylenchus species from Yam (Dioscorea spp.) in West Africa
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References
- Acosta, N. and Ayala, A. 1975. Pathogenicity of Pratylenchus coffeae, Scutellonema bradys, Meloidogyne incognita, and Rotylenchus reniformis on Dioscorea rotundata. Journal of Nematology 7:1–6.
- Adegbite, A. A., Saka, J. O., Agbaje, G. O. and Osuloye, F. O. 2008. Survey of plant-parasitic nematodes associated with yams in Ogun and Osun states of Nigeria. Journal of Plant Protection Research 48:421–428.
- Andrássy, I. 1958. Hoplolaimus tylenchifonnis Daday, 1905 (syn. H. coronatus Cobb, 1923) und die Gattungen der Unterfamilie Hoplolaiminae Filipjev, 1936. Nematologica 3:44–56.
- Anonymous 1975. Annual Report 1973-74, Nigeria Federal Department of Agricultural Research.
- Ayensu, E. S. and Coursey, D. G. 1972. Guinea yams:the botany, ethno-botany, use and possible future of yams in West Africa. Economic Botany 26:301–318.
- Bridge, J. 1972. Nematode problems with yams (Dioscorea spp.) in Nigeria. Tropical Pest Management 18:89–91.
- Bridge, J. 1973. Nematodes as pests of yams in Nigeria. Mededelingen van de Faculteit Landbouwwetenschappen, Rijksuniversiteit Gent 38:841–852.
- Bridge, J. 1988. Plant-parasitic nematode problems in the Pacific islands. Journal of Nematology 20:173–183.
- Bridge, J. and Starr, J. L. 2007. Plant nematodes of agriculture importance:a color handbook Manson Publishing, London.
- Bridge, J., Coyne, D. L. and Kwoseh, C. K. 2005. “Nematode parasites of tropical root and tuber crops (excluding potatoes)”, In Luc, M., Sikora, R. A. and Bridge, J. (Eds), Plant Parasitic Nematodes in Subtropical and Tropical Agriculture CABI, Wallingford, pp. 221–258.
- Castillo, P. and Vovlas, N. 2007. Pratylenchus (Nematoda: Pratylenchidae): diagnosis, biology, pathogenicity and management. Nematology Monographs and Perspectives, 6. Brill, Leiden and Boston, MA.
- Caveness, F. E. 1967. Nematology Studies. End of Tour Progress Report on the Nematology Project USAID, Lagos, 135pp.
- Coates-Beckford, P. L. and Brathwaite, C. W. D. 1977. Comparison of various treatments for the control of Pratylenchus coffeae in yam. Nematropica 7:20–26.
- Corbett, D. C. M. 1976. Pratylenchus brachyurus. C.I.H. Description of plant-parasitic nematodes, Set 6, No. 89. CAB International, Wallingford.
- Corbett, D. C. M. and Clark, S. A. 1983. Surface features in the taxonomy of Pratylenchus species. Revue de Nématologie 6:85–98.
- Coyne, D. L. and Affokpon, A. 2018. “Nematode parasites of tropical root and tuber crops”, In Sikora, R. A., Coyne, D. L., Hallman, J. and Timper, P. (Eds), 2018. Plant Parasitic Nematodes in Subtropical and Tropical Agriculture 3rd edition, CAB International, Wallingford, pp. 252–289.
- Coyne, D. L., Plowright, R. A. and Fofana, I. 1996. Preliminary investigations of nematodes associated with rice in Guinea, Benin and Togo. Afro-Asian Journal of Nematology 6:70–73.
- Coyne, D. L., Plowright, R. A., Twumasi, J. and Hunt, D. J. 1999. Prevalence of plant parasitic nematodes associated with rice in Ghana with a discussion of their importance. Nematology 1:399–405.
- Coyne, D. L., Talwana, H. A. L. and Maslen, N. R. 2003. Plant-parasitic nematodes associated with root and tuber crops in Uganda. African Plant Protection 9:87–98.
- Coyne, D. L., Kolombia, Y. A., Kariuki, G., Luambano, N. and Bert, W. 2016. First report of dry rot disease of yam caused by Scutellonema bradys in East Africa. Plant Disease 100:1794.
- Coyne, D. L., Tchabi, A., Baimey, H., Labuschagne, N. and Rotifa, I. 2006. Distribution and prevalence of nematodes (Scutellonema bradys and Meloidogyne spp.) on marketed yam (Dioscorea spp.) in West Africa. Field Crops Research 96:142–150.
- Coyne, D. L., Cortada, L., Dalzell, J. J., Claudius-Cole, A. O., Haukeland, S., Luambano, N. and Talwana, H. 2018. Plant-parasitic nematodes and food security in Sub-Saharan Africa. Annual Review of Phytopathology 56:381–403.
- De Grisse, A. T. 1969. Redescription ou modification de quelques techniques utilisées dans l’étude des nematodes phytoparasitaires. Landbouwwetenschappen Gent 34:351–369.
- De Guiran, G. 1965. “Nematodes associes au manioc dans le sud du Togo”, Comptes Rendues des Travaux du Congres de la Protection Culture Tropicales, Chambre de commerce et d’industrie, Marseilles, pp. 677–680.
- Duncan, L. W. and Moens, M. 2013. “Migratory endoparasitic nematodes”, In Perry, R. N. and Moens, M. (Eds), Plant nematology CAB International, Wallingford, pp. 144–178.
- Duncan, L. W., Inserra, R. N., Thomas, W. K., Dunn, D., Mustika, I., Frisse, L. M., Mendes, M. L., Morris, K. and Kaplan, D. T. 1999. Molecular and morphological analysis of isolates of Pratylenchus coffeae and closely related specie. Nematropica 29:61–80.
- Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32:1792–1797.
- Egunjobi, O. A. 1974. Nematodes and maize growth in Nigeria. I. Population dynamics of Pratylenchus brachyurus in and about the roots of maize and its effects on maize production at Ibadan. Nematologica 20:181–186.
- Egunjobi, O. A. and Larinde, M. A. 1975. Nematodes and maize growth in Nigeria. II. Effects of some amendments on populations of Pratylenchus brachyurus and on the growth and production of maize (Zea mays) in Nigeria. Nematologia Mediterranea 3:65–73.
- FAO. 2018. Food and Agriculture Organization of the United Nations, Rome, Available at http://www.fao.org/faostat/en/ (accessed August 15, 2020).
- Filipjev, I. N. and Schuurmans Stekhoven, J. H. Jr. 1941. A manual of agricultural helminthology E. J. Brill, Leiden, p. 878.
- Fortuner, R. 1976. Pratylenchus zeae. C. I. H. Description of plant-parasitic nematodes, Set 6, No. 77.
- Frederick, J. J. and Tarjan, A. C. 1989. A compendium of the genus Pratylenchus Filipjev, 1936 (Nemata: Pratylenchidae). Revue de nématologie 12:243–256.
- Godfrey, G. H. 1929. A destructive root disease of pineapple and other plants due to Tylenchus brachyurus. Phytopathology 19:611–629.
- Graham, T. W. 1951. Nematode root rot of tobacco and other plants. Bulletin 390. South Carolina Agricultural Experiment Station, Clemson Agricultural College.
- Guerout, R. 1975. Nematodes of pineapple: a review. Pest Management 21:123–140.
- Hernández, M. A., Jordana, R., Goldaracena, A. and Pinochet, J. 2000. SEM observations on nine species of the genus Pratylenchus Filipjev, 1936 (Nematoda: Pratylenchidae). Journal of Nematode Morphology and Systematics 3:165–174.
- Hooper, D. J., Hallmann, J. and Subbotin, S. A. 2005. “Methods for extraction, processing and detection of plant and soil nematodes”, In Luc, M., Sikora, R. A. and Bridge, J. (Eds), Plant parasitic nematodes in subtropical and tropical agriculture CAB International, Wallingford, pp. 53–86.
- Huelsenbeck, J. P. and Ronquist, F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754–755.
- Inserra, R. N., Troccoli, A., Gozel, U., Bernard, E. C., Dunn, D. and Duncan, L. W. 2007. Pratylenchus hippeastri n. sp. (Nematoda: Pratylenchidae) from amaryllis in Florida with notes on P. scribneri and P. hexincisus. Nematology 9:25–42.
- Janssen, T., Karssen, G., Verhaeven, M., Coyne, D. and Bert, W. 2016. Mitochondrial coding genome analysis of tropical root-knot nematodes (Meloidogyne) supports haplotype based diagnostics and reveals evidence of recent reticulate evolution. Scientific Reports 6:22591.
- Kolombia, Y. A. 2017. Diversity and characterization of plant-parasitic nematodes associated with yam (Dioscorea spp.) in West Africa and a novel approach for rapid resistance screening. PhD Thesis, University of Ghent, Ghent.
- Kolombia, Y. A., Kumar, L. P., Viaene, N., Bert, W. and Coyne, D. L. 2016a. “Nematodes on yam in Nigeria: situation on the ground”, 32nd Symposium of European Society of Nematologists, Braga, Brada, 271.
- Kolombia, Y. A., Kumar, P. L., Claudius-Cole, A. O., Karssen, G., Viaene, N., Coyne, D. and Bert, W. 2016b. First report of Meloidogyne enterolobii causing tuber galling damage on white yam (Dioscorea rotundata) in Nigeria. Plant Disease 100:10.
- Kolombia, Y. A., Kumar, P. L., Adewuyi, O., Korie, S., Viaene, N., Bert, W. and Coyne, D. L. 2020. Distribution, prevalence and severity of damages caused by nematodes on yam (Dioscorea rotundata) in Nigeria. Nematropica 50:1–18.
- Kwoseh, C. K., Plowright, R. A., Bridge, J. and Asiedu, R. 2005. Yam-based farm practices and nematode problems in stored yams (Dioscorea spp.) in Ghana. Journal of Science and Technology 25:35–43.
- Liu, X., Wang, H., Lin, B., Tao, Y., Zhuo, K. and Liao, J. 2016. Loop-mediated isothermal amplification based on the mitochondrial COI region to detect Pratylenchus zeae. European Journal of Plant Pathology 48:435–446.
- Loof, P. A. A. 1985. Pratylenchus scribneri. C. I. H. Description of plant-parasitic nematodes, Set 6, No. 89.
- Loof, P. A. A. and Yassin, A. M. 1971. Three new plant-parasitic nematodes from the Sudan, with notes on Xiphinema basiri Siddiqi, 1959. Nematologica 16: 537–546.
- Luc, M. 1987. A reappraisal of Tylenchida (Nemata). 7. The family Pratylenchidae Thorne, 1949. Revue de Nématologie 10:203–218.
- Luc, M. and de Guiran, G. 1960. Les nématodes associés aux plantes de l’Ouest africain: liste préliminaire. L’Agronomie Tropicale 15:434–449.
- Miège, J. 1957. Influence de quelques caractères des tubercules semences sur la levée et le rendement des ignames cultivées. Journal d’ Agriculture Tropicale et de Botanique Appliquée 4:314–342.
- Moura, R. M. and Monteiro, A. R. 1995. Pratylenchus coffeae on yams in Brazil. Fitopatologia Brasileira 20:256.
- Mudiope, J., Speijer, P. R., Coyne, D. L., Maslen, R. N. and Adipala, E. 2007. Nematode distribution and damage to yam in Central and Eastern Uganda. African Crop Science Journal 15:93–99.
- Muniz, M. F. S., Silva, E. J., Castro, J. M. C., Rocha, F. S., Alencar, L. M. C. and Gonzaga, V. 2012. Intensity of dry rot disease of yam in the state of Alagoas, Brazil. Nematropica 42:198–200.
- Nweke, F. I. 2016. Yam in West Africa: food, money, and more Michigan State University Press.
- Nweke, F. I., Ugwu, B. O., Asadu, C. L. A. and Ay, P. 1991. Production costs in the yam-based cropping systems of south-western Nigeria. Resource and Crop Management Division. Research Monograph 6. IITA, Ibadan.
- Onwueme, I. C. and Charles, W. B. 1994. Tropical root and tuber crops: production, perspectives and future prospects. (FAO Plant Product. Protect. Paper 126). FAO, Rome.
- Orkwor, G. C. 1998. “The importance of yams”, In Orkwor, G. C., Asiedu, R. and Ekanayake, I. J. (Eds), Food Yams: Advances in Research IITA/NRCRI, Nigeria, pp. 1–12.
- Osei, K., Danso, Y., Otoo, E., Adomako, J., Sackey-Asante, J. and Abugri, B. 2015. Evaluation of yam varieties for reaction to plant parasitic nematodes infestation in three agro - ecologies of Ghana. Academic Research Journal of Agricultural Science and Research 3:201–206.
- Ozbayrak, M., Todd, T., Harris, T., Higgins, R., Powers, K., Mullin, P., Sutton, L. and Powers, T. 2019. A COI DNA barcoding survey of Pratylenchus species in the Great Plains Region of North America. Journal of Nematology 51:1–21.
- Palomares-Rius, J. E., Guesmi, I., Horrigue-Raouani, N., Cantalapiedra-Navarrete, C., Liébanas, G. and Castillo, P. 2014. Morphological and molecular characterisation of Pratylenchus oleae n. sp.(Nematoda: Pratylenchidae) parasitizing wild and cultivated olives in Spain and Tunisia. European Journal of Plant Pathology 140:53–67.
- Payan, L. A. 1989. The intraspecific variation of Pratylenchus brachyurus University of Florida.
- Plowright, R. A. and Hunt, D. J. 1994. Plant parasitic nematodes of upland, hydromorphic and inland swamp rice ecosystems in Côte d’Ivoire. Afro-Asian Journal of Nematology 4:61–67.
- Posada, D. 2008. jModelTest: phylogenetic model averaging. Molecular Biology and Evolution 25:1253–1256.
- Pourjam, E., Waeyenberge, L., Moens, M. and Geraert, E. 1999. Morphological, morphometrical and molecular study of Pratylenchus coffeae and P. loosi (Nematoda: Pratylenchidae). Mededelingen Faculteit Landbouwkundige En Toegepaste Biologische Wetenschappen, Universiteit Gent 64:391–401.
- Rensch, D. 1924. Aphelenchus neglectus sp. n. eine neue parasitäre Nematodenart. Sonderabdruck aus dem Zoologischen Anzeiger. 59:277–280.
- Roman, J. and Hirschmann, H. 1969. Morphology and morphometrics of six species of Pratylenchus. Journal of Nematology 1:363–386.
- Seinhorst, J. W. 1959. A rapid method for the transfer of nematodes from fixative to anhydrous glycerin. Nematologica 4:67–69.
- Seinhorst, J. W. 1968. Three new Pratylenchus species with a discussion of the structure of the cephalic framework and of the spermatheca in this genus. Nematologica 14:497–510.
- Sherbakoff, C. D. and Stanley, W. W. 1943. The more important diseases and insect pests of crops in Tennessee. Tennessee Agriculture Experiment Station Bulletin 186:1–142.
- Speijer, P. R., De Waele, D. and Rotimi, M. O. 2001. Plant parasitic nematodes associated with plantain (Musa spp., AAB-group) in southern Nigeria and their relative importance compared to other biotic constraints. Nematology 3:423–436.
- Steiner, G. R. and LeHew, R. R. 1933. Hoplolaimus bradys n. sp. (Tylenchidae, Nematoda), the cause of a disease of yam (Dioscorea sp.). Zoologischer Anzeiger 101:260–264.
- Subbotin, S. A., Sturhan, D., Chizhov, V. N., Vovlas, N. and Baldwin, J. G. 2006. Phylogenetic analysis of Tylenchida Thorne, 1949 as inferred from D2 and D3 expansion fragments of the 28S rRNA gene sequences. Nematology 8:455–474.
- Subbotin, S. A., Ragsdale, E. J., Mullens, T., Roberts, P. A., Mundo-Ocampo, M. and Baldwin, J. G. 2008. A phylogenetic framework for root lesion nematodes of the genus Pratylenchus (Nematoda): evidence from 18S and D2-D3 expansion segments of 28S ribosomal RNA genes and morphological characters. Molecular Phylogenetics and Evolution 48:491–505.
- Tarjan, A. C. and Frederick, J. J. 1978. Intraspecific morphological variation among populations of Pratylenchus brachyurus and P. coffeae. Journal of Nematology 10:152–160.
- Taylor, D. and Jenkins, W. 1957. Variation within the nematode genus Pratylenchus, with the descriptions of P. hexincisus, n. sp. and P. subpenetrans, n. sp. Nematologica 2:159–174.
- Thorne, G. and Malek, R. B. 1968. Nematodes of the Northern Great Plains. I. Tylenchida. South Dakota Agricultural Experimental Station. Technical Bulletin 31:111.
- Unny, K. L. and Jerath, M. L. 1965. Parasitic nematodes. Plant Disease Reporter 49:875–876.
- Varghese, R. and Mohandas, C. 2004. Pratylenchus loosi, a new record on Dioscorea rotundata. Indian Journal of Nematology 34:221–222.
- Waeyenberge, L., Ryss, A., Moens, M., Pinochet, J. and Vrain, T. C. 2000. Molecular characterisation of 18 Pratylenchus species using rDNA restriction fragment length polymorphism. Nematology 2:135–142.
- Yoder, M., De Ley, I. T., King, I. W., Mundo-Ocampo, M., Mann, J., Blaxter, M., Poiras, L. and De Ley, P. 2006. DESS: a versatile solution for preserving morphology and extractable DNA of nematodes. Nematology 8:367–376.
- Zimmermann, A. W. P. 1898. De nematoden der koffiewortels. Deel I. Mededelingen uit’s Lands Plantentuin 27:1–64.
- Zhao, L., Cui, R., Wang, J., Hu, X., Zhong, G. and Zhang, Z. 2011. Pratylenchus brachyurus was intercepted in Colocasia sp. from Nigeria. Plant Quarantine 25:35–38.
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© 2021 Yao A. Kolombia, Oluwadamilola Ogundero, Emmanuel Olajide, Nicole Viaene, P. Lava Kumar, Danny L. Coyne, Wim Bert, published by Society of Nematologists, Inc.
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