Transcriptomic analysis of Bursaphelenchus xylophilus treated by a potential phytonematicide, punicalagin
References
- Conesa, A. and Götz, S. 2008. Blast2GO: a comprehensive suite for functional analysis in plant genomics. International Journal of Plant Genomics. DOI: 10.1155/2008/619832.
- Funabara, D., Hamamoto, C., Yamamoto, K., Inoue, A., Ueda, M., Osawa, R., Kanoh, S., Hartshorne, D.J., Suzuki, S. and Watabe, S. 2007. Unphosphorylated twitchin forms a complex with actin and myosin that may contribute to tension maintenance in catch. Journal of Experimental Biology 210:4399–4410.
- Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D. A., Adiconis, Amit, I. X., Fan, L., Raychowdhury, R. and Zeng, Q. D. 2011. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology 29:644–652.
- Gray, H.B. and Winkler, J. R. 1996. Electron transfer in proteins. Annual Review of Biochemistry 65:537–561.
- Guo, Q. Q., Du, G. C., He, H. W., Xu, H. K., Guo, D. S. and Li, R. G. 2016. Two nematocidal furocoumarins from Ficus carica L. leaves and their physiological effects on pine wood nematode (Bursaphelenchus xylophilus). Natural Product Research 30:1969–1973.
- Guo, Q. Q., Du, G. C., Li, Y. X., Liang, C. Y., Wang, C., Zhang, Y. N. and Li, R. G. 2018. Nematotoxic coumarins from Angelica pubescens Maxim. f. biserrata Shan et Yuan roots and their physiological effects on Bursaphelenchus xylophilus. Journal of Nematology 50:1–10
- Guo, Q. Q., Du, G. C., Qi, H. T., Zhang, Y. N., Yue, T. Q., Wang, J. C. and Li, R. G. 2017. A nematicidal tannin from Punica granatum L. rind and its physiological effect on pine wood nematode (Bursaphelenchus xylophilus). Pesticide Biochemistry and Physiology 135:64–68.
- Haas, B. J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P. D., Bowden, J., Couger, M. B., Eccles, D., Li, B. and Lieber, M. 2013. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nature Protocols 8:1494–512.
- Han, Y., Gao, S., Muegge, K., Zhang, W. and Zhou, B. 2015. Advanced applications of RNA sequencing and challenges. Bioinformatics and Biology Insights 9(S1):29–46.
- Hatefi, Y. 1985. The mitochondrial electron transport and oxidative phosphorylation system. Annual Review of Biochemistry 54:1015–1069.
- Huang, T., Lin, Q., Qian, X., Zheng, Y., Yao, J., Wu, H., Li, M., Jin, X., Pan, X., Zhang, L. and Guan, X. 2017. Nematicidal activity of Cry1Ea11 from bacillus thuringiensis brc-xq12 against the pine wood nematode (Bursaphelenchus xylophilus). Phytopathology 108:44–51.
- Kim, E., Kim, J. and Park, I. K. 2011. Nematicidal activity of Korean domestic plant extracts against the pine wood nematode, Bursaphelenchus xylophilus. Nematology 13:377–380.
- Lee, H. R., Lee, S. C., Lee, J. E., Seo, S. M., Jeong, Y. C., Jung, C. S., Moloney, M. G. and Park, I. K. 2017. Nematicidal activity of 3-acyltetramic acid analogues against pine wood nematode, Bursaphelenchus xylophilus. Molecules 22:1568–1575.
- Li, B. and Dewey, C. N. 2011. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12:323–338.
- Livak, K. J. and Schmittgen, T. D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods 25:402–408.
- Mamiya, Y. 1983. Pathology of the pine wilt disease caused by Bursaphelenchus xylophilus. Annual Review of Phytopathology 21:201–220.
- Mota, M. M., Braasch, H. M., Bravo, A. A., Penas, C., Burgemeister, W., Metge, K. and Sousa, E. 1999. First report of Bursaphelenchus xylophilus in Portugal and in Europe. Nematology 1:727–734.
- Park, I. K., Kim, J., Lee, S. G. and Shin, S. C. 2007. Nematicidal activity of plant essential oils and components from Ajowan (Trachyspermum ammi), all spice (Pimenta dioica) and Litsea (Litsea cubeba) essential oils against pine wood nematode (Bursaphelenchus xylophilus). Journal of Nematology 39:275–279.
- Rabinovitch, M. 1995. Professional and non-professional phagocytes: an introduction. Trends in Cell Biology 5:85–87.
- Revel, A. T., Talaat, A. M. and Norgard, M. V. 2002. DNA microarray analysis of differential gene expression in Borrelia burgdorferi, the Lyme disease spirochete. Proceedings of the National Academy of Sciences of the United States of America 99:1562–1567.
- Seo, S. M., Kim, J. S., Koh, H., Ahn, Y. J. and Park, I. K. 2014. Nematicidal activity of natural ester compounds and their analogues against pine wood nematode, Bursaphelenchus xylophilus. Journal of Agricultural and Food Chemistry 62:9103–9108.
- Viglierchio, D. R. and Schmit, R. V. 1983. On the methodology of nematode extraction from field samples: Baermann funnel modifications. Journal of Nematology 15:438–444.
- Wang, J., Pan, X., Han, Y., Guo, D., Guo, Q. and Li, R. 2012. Rosmarinic acid from eelgrass shows nematicidal and antibacterial activities against pine wood nematode and its carrying bacteria. Marine Drugs 10:2729–2740.
- Wang, Z., Gerstein, M. and Snyder, M. 2009. RNA-Seq: a revolutionary tool for transcriptomics. Nature Reviews Genetics 10:57–63.
- Xie, C., Mao, X. Z., Huang, J. J., Ding, Y., Wu, J. M., Dong, S., Kong, L., Gao, G., Li, C. Y. and Wei, L. P. 2011. KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. Nucleic Acids Research 39:W316–W322.
- Yu, J., Du, G., Li, R., Li, L., Li, Z., Zhou, C., Chen, C. and Guo, D. 2015. Nematicidal activities of bacterial volatiles and components from two marine bacteria, Pseudoalteromonas marinastrain H-42 and Vibrio atlanticusstrain S-16, against the pine wood nematode, Bursaphelenchus xylophilus. Nematology 17:1011–1025.
Language: English
Page range: 1 - 14
Published on: Mar 18, 2020
Published by: Society of Nematologists, Inc.
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
Keywords:
Related subjects:
© 2020 Qun-Qun Guo, Gui-Cai Du, Ting-Ting Zhang, Mei-Juan Wang, Chao Wang, Hong-Tao Qi, Rong-Gui Li, published by Society of Nematologists, Inc.
This work is licensed under the Creative Commons Attribution 4.0 License.