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How to Run Linear Mixed Effects Analysis for Pairwise Comparisons? A Tutorial and a Proposal for the Calculation of Standardized Effect Sizes Cover

How to Run Linear Mixed Effects Analysis for Pairwise Comparisons? A Tutorial and a Proposal for the Calculation of Standardized Effect Sizes

By: Marc Brysbaert and  Dries Debeer  
Open Access
|Jan 2025

Abstract

This tutorial provides guidelines for conducting linear mixed effects (LME) analyses for simple designs, aimed at researchers familiar with t-tests, analysis of variance (ANOVA) and linear regression. First, we compare LME analyses with traditional methods when participants are the only source of random variation. We show that LME analysis is more interesting as soon as you have more than one observation per participant per condition. The second section discusses studies where both participants and stimuli are used as sources of random variation, ensuring robust generalization beyond the specific stimuli tested. In our search for standardized effect sizes, we saw that partial eta squared is even less informative for LME than for ANOVA. We present eta squared within as an alternative, to be used in combination with the traditional measure eta squared (also in ANOVA). To facilitate implementation, we analyze toy datasets with R and jamovi. This tutorial gives researchers a good foundation for LME analyses of simple 2 × 2 designs and paves the way for tackling more complicated designs.

DOI: https://doi.org/10.5334/joc.409 | Journal eISSN: 2514-4820
Language: English
Submitted on: Sep 11, 2023
Accepted on: Oct 7, 2024
Published on: Jan 6, 2025
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2025 Marc Brysbaert, Dries Debeer, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.