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Whole Genome Sequence Analysis of Lactiplantibacillus plantarum Bacteriophage P2 Cover

Whole Genome Sequence Analysis of Lactiplantibacillus plantarum Bacteriophage P2

Open Access
|Sep 2022

Figures & Tables

Fig. 1

Circular representation of the Lactiplantibacillus plantarum phage P2 genome. The innermost circle indicates the GC skew on the positive and negative strand (green and purple). The second circle indicates the GC content (black). The outer circle indicates predicted CDS located on the positive and negative DNA strand (lavender). Red indicates tRNA coding genes.
Circular representation of the Lactiplantibacillus plantarum phage P2 genome. The innermost circle indicates the GC skew on the positive and negative strand (green and purple). The second circle indicates the GC content (black). The outer circle indicates predicted CDS located on the positive and negative DNA strand (lavender). Red indicates tRNA coding genes.

Fig. 2

Comparative phylogenetic analysis. Comparative phylogenetic analysis of nucleotide sequences was aligned by ClustalW and performed using the neighbor-joining method in MEGA5.2. Numbers associated with each branch represent bootstrap values.
Comparative phylogenetic analysis. Comparative phylogenetic analysis of nucleotide sequences was aligned by ClustalW and performed using the neighbor-joining method in MEGA5.2. Numbers associated with each branch represent bootstrap values.

The adsorption rate of phage P2 on cell wall after chemical and enzyme treatment_

TreatmentPhage P2 adsorption (%) (mean ± S.D.)
none (control)97.26 ± 1.21a
1% SDS (30 min, 37°C)98.26 ± 4.08a
50 U/ml lysozyme (30 min, 37°C)75.78 ± 3.01b
0.1 mg/ml proteinase K (30 min, 37°C)97.80 ± 1.81a
5% TCA (15 min, 100°C)57.14 ± 6.25c

Predicted function genes of L_ plantarum P2_

CDSStrandPredicted functionFunction
CDS12+terminase small subunitpackaging
CDS14+terminase large subunit
CDS15+portal protein
CDS16+prohead proteasestructure
CDS17+major capsid protein
CDS18+putative tail protein
CDS20+head-tail joining protein
CDS21+head-tail adaptor
CDS22+tail protein
CDS23+major tail protein
CDS25+tape measure protein
CDS26+distal tail protein
CDS27+baseplate protein tail-like protein
CDS28+tail fiber protein
CDS57membrane protein
CDS35+integrasehost interaction
CDS59ATP/GTP- binding proteinregulation
CDS48PemK family transcriptional regulator
CDS83+putative DNA binding protein
CDS37DNA polymeraseDNA replication
CDS58DNA polymerase
CDS72+DNA helicase
CDS73+DNA primase
CDS74+single-stranded-DNA-specific exonuclease
CDS1HNH endonuclease
CDS3HNH endonuclease
CDS11+HNH endonuclease
CDS38HNH endonuclease
CDS41HNH endonuclease
CDS45HNH endonuclease
CDS56HNH endonuclease
CDS65HNH homing endonuclease
tRNA+tRNA-Pro
tRNA+tRNA-Gly
CDS44extracellular transglycosylaseadditional function
CDS69+deoxynucleoside kinase
CDS96 thymidine kinase
DOI: https://doi.org/10.33073/pjm-2022-037 | Journal eISSN: 2544-4646 | Journal ISSN: 1733-1331
Language: English
Page range: 421 - 428
Submitted on: May 25, 2022
Accepted on: Jul 22, 2022
Published on: Sep 24, 2022
Published by: Polish Society of Microbiologists
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year

© 2022 Hanfang Zhu, She Guo, Jie Zhao, Hafiz Arbab Sakandar, Ruirui Lv, Qiannan Wen, Xia Chen, published by Polish Society of Microbiologists
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.