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Diversity of Endophytic Fungal Community in Leaves of Artemisia argyi Based on High-throughput Amplicon Sequencing Cover

Diversity of Endophytic Fungal Community in Leaves of Artemisia argyi Based on High-throughput Amplicon Sequencing

Polish Journal of Microbiology
Volume 70 (2021): Issue 2 (June 2021)
By: ,  ,  ,  ,   and    
Open Access
|Dec 2021
Figures & tables

Figures & Tables

Table I

Richness and diversity of endophytic fungi in A. argyi leaves.

TreatmentsNo. of readsShannon indexChao1 indexACE indexSimpson index
WA53504.02.09 ± 0.01a180.53 ± 15.03a193.54 ± 8.34a0.25 ± 0.000a
AQA69364.02.19 ± 0.01a223.91 ± 9.32a226.58 ± 11.53a0.24 ± 0.000a
HA71661.02.57 ± 0.02a239.38 ± 10.02a242.84 ± 10.02a0.14 ± 0.000a
BA81561.02.62 ± 0.04a255.54 ± 8.39a253.33 ± 9.14a0.08 ± 0.000a
QA89829.02.99 ± 0.03a291.73 ± 15.12a297.24 ± 12.02a0.12 ± 0.001a

1 Note: Same lowercase letters indicate no significant difference among the samples (p > 0.05).

Fig. 1.

Venn graph of OTUs distribution in the samples.

Fig. 2.

Rarefaction curve of the samples.

Fig. 3.

Fungal community composition in the samples at the phylum level.

Fig. 4.

Fungal community composition in the samples at the genus level.

Fig. 5.

Heatmap of genetic distance between the samples.

Fig. 6.

PCA of the samples.

Table II

FUNGuild Functional analysis.

GenericTypeGenericType
Aspergillus_intermediusbiocontrol fungi-saprotrophPhanerochaetepathotroph
Aspergillus_sydowiibiocontrol fungi-saprotrophPhlebiapathotroph-saprotroph-symbiotroph
Penicillium_catenatumbiocontrol fungi-saprotrophPhomasaprotroph-symbiotroph
Penicillium_oxalicumbiocontrol fungi-saprotrophPodosphaerapathotroph-saprotroph-symbiotroph
Botryosphaeriapathotroph-saprotroph-symbiotrophRamichloridiumpathotroph-saprotroph
Botrytispathotroph-saprotrophRhodotorulasaprotroph
Cladosporiumpathotroph-saprotroph-symbiotrophSarocladiumpathotroph-saprotroph
Clonostachyspathotroph-saprotrophSchizophyllumpathotroph-symbiotroph
CurvulariasaprotrophSphaerulinasaprotroph
Cyphellophorapathotroph-saprotroph-symbiotrophSporisoriumsaprotroph
CystobasidiumsaprotrophSporobolomycespathotroph-symbiotroph
Diaporthepathotroph-saprotroph-symbiotrophStagonosporasaprotroph
DothideasaprotrophStemphyliumsaprotroph
EdeniapathotrophTilletiopsissaprotroph
EntocybepathotrophTrametespathotroph-saprotroph
EntodesmiumpathotrophTricharinapathotroph-saprotroph-symbiotroph
ErythrobasidiumpathotrophTrichomeriaceaepathotroph
Filobasidiumpathotroph-saprotroph-symbiotrophTrichosporonpathotroph-saprotroph-symbiotroph
Fusariumpathotroph-saprotrophVerticilliumpathotroph
Gibellulopsispathotroph-saprotrophAlternariapathotroph-saprotroph
Herpotrichiellaceaepathotroph-saprotroph-symbiotrophAmphisphaeriaceaepathotroph-saprotroph-symbiotroph
KnufiapathotrophAmphobotryspathotroph-saprotroph-symbiotroph
LeptosphaeriapathotrophAnthracocystispathotroph
LimonomycessaprotrophApiotrichumpathotroph
Microdochiumpathotroph-saprotroph-symbiotrophArticulosporapathotroph
Mycosphaerellapathotroph-symbiotrophAscochytapathotroph
MyrmecridiumsaprotrophAurantiporuspathotroph
MyrotheciumsymbiotrophAureobasidiumpathotroph
Neosetophomapathotroph-saprotroph-symbiotrophunclassifiedother
Occultifursaprotrophunclassified_Ascomycotaother
Paraconiothyriumpathotroph-saprotrophunclassified_Fungiother
Paraphomapathotroph-saprotrophunclassified_Phaeosphaeriaceaeother
Phaeosphaeriapathotroph-saprotrophOthersother
DOI: https://doi.org/10.33073/pjm-2021-025 | Journal eISSN: 2544-4646 | Journal ISSN: 1733-1331
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Language: English
Page range: 273 - 281
Submitted on: Mar 15, 2021
Accepted on: May 24, 2021
Published on: Dec 6, 2021
Published by: Polish Society of Microbiologists
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year
Keywords:
Artemisia argyi,
endophytic fungus,
leaf,
Illumina,
next-generation sequencing
Related subjects:
Life sciences,
Microbiology and virology

© 2021 QIU-FANG WU, LING-MIN HE, XIN-QIANG GAO, MEI-LING ZHANG, JING-SHUN WANG, LI-JIANG HOU, published by Polish Society of Microbiologists
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

Volume 70 (2021): Issue 2 (June 2021)
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