Adl, S. M., Simpson, A. G. B., Lane, C. E., Lukeš, J., Bass, D., Bowser, S. S., Brown, M. W., Burki, F., Dunthorn, M., Hampl, V., Heiss, A., Hoppenrath, M., Lara, E., Gall, L. L., Lynn, D. H., Mcmanus, H., Mitchell, E. A. D., Mozley-Stanridge, S. E., Parfrey, L. W, Pawlowski, J., Rueckert, S., Shadwick, L., Schoch, C. L., Smirnov, A. and Spiegel, F. W. 2012. The revised classification of eukaryotes. Journal of Eukaryotic Microbiology 59:429–514. DOI: 10.1111/j.1550-7408.2012.00644.x.
Arpin, P. and Kilbertus, G. 1981. Ultrastructure du contenu digestif et de l’épithelium intestinal chez quelques nématodes prédateurs (Mononchida) et bactériophages. Revue Nematology 4:131–143.
Berg, M., Stenuit, B., Ho, J., Wang, A., Parke, C., Knight, M., Alvarez-Cohen, L. and Shapira, M. 2016. Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environments. ISME Journal 10:1998–2009. DOI: 10.1038/ismej.2015.253.
Bilgrami, A. L. 2008. Biological control potentials of predatory nematodes. Integrated Management and Biocontrol of Vegetable and Grain Crops Nematodes 3:28. DOI: 10.1007/978-1-4020-6063-2_1.
Cabos, R. Y. M., Wang, K. H., Sipes, B. S., Heller, W. P. and Matsumoto, T. K. 2013. Detection of plant-parasitic nematode DNA in the gut of predatory and omnivorous nematodes. Nematropica 43:44–48.
Callahan, B. J., McMurdie, P. J., Rosen, M. J., Han, A. W., Johnson, A. J. A. and Holmes, S. P. 2016. DADA2: High-resolution sample inference from Illumina amplicon data. Nature Methods 13:581–583. DOI: 10.1038/nmeth.3869.
Casper, R. M., Jarman, S. N., Gales, N. J. and Hindell, M. A. 2007. Combining DNA and morphological analyses of fecal samples improves insight into trophic interactions: A case study using a generalist predator. Marine Biology 152:815–825. DOI: 10.1007/s00227-007-0732-y.
Chen, S., Zhou, Y., Chen, Y. and Gu, J. 2018. Fastp: An ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 34:i884–i890. DOI: 10.1093/bioinformatics/bty560.
Deagle, B. E., Kirkwood, R. and Jarman, S. N. 2009. Analysis of Australian fur seal diet by pyrosequencing prey DNA in feces. Molecular Ecology 18:2022–2038. DOI: 10.1111/j.1365-294X.2009.04158.x.
Derycke, S., De Meester, N., Rigaux, A., Creer, S., Bik, H., Thomas, W. K. and Moens, T. 2016. Coexisting cryptic species of the Litoditis marina complex (Nematoda) show differential resource use and have distinct microbiomes with high intraspecific variability. Molecular Ecology 25:2093–2110. DOI: 10.1111/mec.13597.
Engelbrektson, A., Kunin, V., Wrighton, K. C., Zvenigorodsky, N., Chen, F., Ochman, H. and Hugenholtz, P. 2010. Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME Journal 4:642–647. DOI: 10.1038/ismej.2009.153.
Euringer, K. and Lueders, T. 2008. An optimized PCR/T-RFLP fingerprinting approach for the investigation of protistan communities in groundwater environments. Journal of Microbiological Methods 75:262–268. DOI: 10.1016/j.mimet.2008.06.012.
Ferris, H., Bongers, T. and de Goede, R. G. M. 2001. A framework for soil food web diagnostics: extension of the nematode faunal analysis concept. Applied Soil Ecology 18:13–29. DOI: 10.1016/s0929-1393(01)00152-4.
Hall, M. and Beiko, R. G. 2018. 16S rRNA Gene Analysis with QIIME2. in: R. Beiko, W. Hsiao, J. Parkinson, eds. Microbiome Analysis. Methods in Molecular Biology. V. 1849. New York: Humana Press. DOI: 10.1007/978-1-4939-8728-3_8.
Harper, G. L., King, R. A., Dodd, C. S., Harwood, J. D., Glen, D. M., Bruford, M. W. and Symondson, W. O. C. 2005. Rapid screening of invertebrate predators for multiple prey DNA targets. Molecular Ecology 14:819–827. DOI: 10.1111/j.1365-294x.2005.02442.x.
Khan, Z. and Kim, Y. H. 2005. The predatory nematode, Mononchoides fortidens (Nematoda: Diplogasterida), suppresses the root-knot nematode, Meloidogyne arenaria, in potted field soil. Biological Control 35:78–82. DOI: 10.1016/j.biocontrol.2005.05.015.
King, R. A., Vaughan, I. P., Bell, J. R., Bohan, D. A. and Symondson, W. O. C. 2010. Prey choice by carabid beetles feeding on an earthworm community analyzed using species- and lineage-specific PCR primers. Molecular Ecology 19:1721–1732. DOI: 10.1111/j.1365-294X.2010.04602.x.
McQueen, J. P., Gattoni, K., Gendron, E. M. S., Schmidt, S. K., Sommers, P. and Porazinska, D. L. 2022. Host identity is the dominant factor in the assembly of nematode and tardigrade gut microbiomes in Antarctic Dry Valley streams. Scientific Reports 12. DOI: 10.1038/s41598-022-24206-5.
McQueen, J. P., Gattoni, K., Gendron, E. M. S., Schmidt, S. K., Sommers, P. and Porazinska, D. L. 2023. External and internal microbiomes of Antarctic nematodes are distinct, but more similar to each other than the surrounding environment. Journal of Nematology 55. DOI: 10.2478/jofnem-2023-0004.
Mikaeili, F., Kia, E.B., Sharbatkhori, M., Sharifdini, M., Jalalizand, N., Heidari, Z., Zarei, Z., Stensvold, C.R., et al. (2013). Comparison of six simple methods for extracting ribosomal and mitochondrial DNA from Toxocara and Toxascaris nematodes. Experimental Parasitology 134:155–159. DOI: 10.1016/j.exppara.2013.02.008.
Pompanon, F., Deagle, B. E., Symondson, W. O. C., Brown, D. S., Jarman, S. N. and Taberlet, P. 2012. Who is eating what: Diet assessment using next-generation sequencing. Molecular Ecology 21:1931–1950. DOI: 10.1111/j.1365-294X.2011.05403.x.
Pons, J. 2006. DNA-based identification of preys from non-destructive, total DNA extractions of predators using arthropod universal primers. Molecular Ecology Notes 6:623–626. DOI: 10.1111/j.1471-8286.2006.01353.x.
Porazinska, D. L., Giblin-Davis, R. M., Faller, L., Farmerie, W., Kanzaki, N., Morris, K., Powers, T. O., Tucker, A. E., Sung, W. and Thomas, K. 2009. Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity. Molecular Ecology Resources 9:1439–1450. DOI: 10.1111/j.1755-0998.2009.02611.x.
Ruess, L., Häggblom, M. M., Garcia Zapata, J. and Dighton, J. 2002. Fatty acids of fungi and nematodes-possible biomarkers in the soil food chain? Soil Biology and Biochemistry 34:745–756. DOI: 10.1016/s0038-0717(01)00231-0.
Salinas, K. A. and Kotcon, J. 2005. In vitro culturing of the predatory soil nematode Clarkus papillatus. Nematology 7:5–9. DOI: 10.1163/1568541054192162.
Schuelke, T., Pereira, T. J., Hardy, S. M. and Bik, H. M. 2018. Nematode-associated microbial taxa do not correlate with host phylogeny, geographic region or feeding morphology in marine sediment habitats. Molecular Ecology 27:1930–1951. DOI: 10.1111/mec.14539.
Shehzad, W., Riaz, T., Nawaz, M. A., Miquel, C., Poillot, C., Shah, S. A., Pompanon, F., Coissac, E. and Taberlet, P. 2012. Carnivore diet analysis based on next-generation sequencing: Application to the leopard cat (Prionailurus bengalensis) in Pakistan. Molecular Ecology 21:1951–1965. DOI: 10.1111/j.1365-294X.2011.05424.x.
Small, R. W. 1979. The effects of predatory nematodes on populations of plant-parasitic nematodes in pots. Nematologica 25:94–103. DOI: 10.1163/187529279x00424.
Small, R. W. and Grootaert, P. 1983. Observations on the predation abilities of some soil-dwelling predatory nematodes. Nematologica 29:109–118. DOI: 10.1163/187529283x00230.
Soininen, E. M., Zinger, L., Gielly, L., Bellemain, E., Bråthen, K. A., Brochmann, C., Epp, L. S., Gussarova, G., Hassel, K., Henden, J., Killengreen, S. T., Rama, T., Stenoien, H. K., Yoccoz, N. G. and Ims, R. A. 2013. Shedding new light on the diet of Norwegian lemmings: DNA metabarcoding of stomach content. Polar Biology 36:1069–1076. DOI: 10.1007/s00300-013-1328-2.
Stoeck, T., Bass, D., Nebel, M., Christen, R., Jones, M. D. M., Breiner, H. W. and Richards, T. A. 2010. Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Molecular Ecology 19:21–31. DOI: 10.1111/j.1365-294X.2009.04480.x.
Tahseen, Q., Mohammad, A., Mustaqim, M., Ahlawat, S. and Bert, W. 2013. Descriptions of ten known species of the superfamily Mononchoidea (Mononchida: Nematoda) from North India with a detailed account on their variations. Zootaxa 3646:301–335. DOI: 10.11646/zootaxa.3646.4.1.
Valentini, A., Miquel, C., Nawaz, M.A., Bellemain, E., Coissac, E., Pompanon, F., Gielly, L., Cruaud, C., Nascetti, G., Wincker, P., Swenson, J. E. and Taberlet, P. 2009. New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: The trnL approach. Molecular Ecology Resources 9:51–60. DOI: 10.1111/j.1755-0998.2008.02352.x.
Vestheim, H. and Jarman, S. N. 2008. Blocking primers to enhance PCR amplification of rare sequences in mixed samples - A case study on prey DNA in Antarctic krill stomachs. Frontiers in Zoology 5. DOI: 10.1186/1742-9994-5-12.
Waeyenberge, L., de Sutter, N., Viaene, N. and Haegeman, A. 2019. New insights into nematode DNA metabarcoding as revealed by the characterization of artificial and spiked nematode communities. Diversity 11. DOI: 10.3390/d11040052.
Whitehead, A. G. and Hemming, J. R. 1965. A comparison of some quantitative methods of extracting small vermiform nematodes from soil. Annals of Applied Biology 55:25–38. DOI: 10.1111/j.1744-7348.1965.tb07864.x.
Wood, F. H. 1973. Nematode feeding relationships feeding relationships of soil-dwelling nematodes. Soil Biology and Biochemistry 5:593–601. DOI: 10.1016/0038-0717(73)90049-7.
Yeates, G. W. 1969. Predation by Mononchoides potohikus (Nematoda: Diplogasteridae) in laboratory culture. Nematologica 15:3–9. DOI: 10.1163/187529269x00029.
Yeates, G. W., Bongers, T., De Goede, R. G. M., Freckman, D. W. and Georgieva, S. S. 1993. Feeding habits in soil nematode families and genera-An outline for soil ecologists. Journal of Nematology 25:315–331.
Yilmaz, P., Parfrey, L. W., Yarza, P., Gerken, J., Pruesse, E., Quast, C., Schweer, T., Peplies, J., Ludwig, W. and Glockner, F. O. 2014. The SILVA and “all-species living tree project (LTP)” taxonomic frameworks. Nucleic acids research 42:D643–D648