References
- Abouheif, E., Zardoya, R., and Meyer, A. 1998. Limitations of metazoan 18S rRNA sequence data: Implications for reconstructing a phylogeny of the animal kingdom and inferring the reality of the Cambrian explosion. Journal of Molecular Evolution 47:394–405. doi/10.1007/PL00006397.
- Adams, S. M., Shepard, K. L., Greeley, Jr. M. S., Jimenez, B. D., Ryon, M. G., Shugart, L. R., McCarthy, J. F., and Hinton, D. E. 1989. The use of bioindicators for assessing the effects of pollutant stress on fish. Marine Environmental Research 28(1–4):459–464.
- Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990. Basic local alignment search tool. Journal of Molecular Biology 215(3):403–410.
- Anderson, R. M., and Gordon, D. M. 1982. Processes influencing the distribution of parasite numbers within host populations with special emphasis on parasite-induced host mortalities. Parasitology 85(Pt 2):373–398. doi/10.1017/S0031182000055347.
- Arthur, J. R., and Lumanlan-Mayo, S. 1997. Checklist of the parasites of fishes of the Philippines. FAO Fisheries Technical Paper No. 369. Rome: FAO. 102p
- Azimi, S., and Rocher, V. 2016. Influence of the water quality improvement on fish population in the Seine River (Paris, France) over the 1990-2013 period. The Science of the Total Environment 542(Pt A):955– 964. doi/10.1016/j.scitotenv.2015.10.094.
- Borges, J. N., Cunha, L. F. G., Santos, H. L. C., Monteiro-Neto, C., and Santos, C. P. 2012. Morphological and molecular diagnosis of anisakid nematode larvae from Cutlassfish (Trichiurus lepturus) off the Coast of Rio de Janeiro, Brazil. PLoS ONE 7(7):e40447. doi/10.1371/journal.pone.0040447.
- Calabrese, J. M., Brunner, J. L., and Ostfeld, R. S. 2011. Partitioning the aggregation of parasites on hosts into intrinsic and extrinsic components via an extended Poisson-gamma mixture model. PLoS ONE 6(12):e29215. doi/10.1371/journal.pone.0029215.
- Cavallero, S., Costa, A., Caracappa, S., Gambetta, B., and D’Amelio, S. 2014. Putative hybrids between two Anisakis cryptic species: Molecular genotyping using high resolution melting. Experimental Parasitology 146:87–93. doi/10.1016/j.exppara.2014.08.017.
- Costa, G., MacKenzie, K., and Oliva, M. E. 2017. A review of the parasites infecting fishes of the genus Trachurus (Pisces: Carangidae). Reviews in Fisheries Science and Aquaculture 25(4):297– 315. Available at : https://www.researchgate.net/deref/http%3A%2F%2Fdx.doi.org%2F10.1080%2F23308249.2017.1293607
- Cudmore, A. A. 2009. Shifting baselines in the fishing Industry of the Lummi nation: A study of declining expectations. WWU Honors Program Senior Projects 319. Available at: https://cedar.wwu.edu/wwu_honors/319
- Dauda, J., Lawal, J. R., Bello, A. M., Majama, Y. B., Lekko, Y. M., Mshelia, E. S., and Bui, A. A. 2016. Prevalence of gastrointestinal helminths of Tilapia zilli (Gervias) in Gombe, Northeastern Nigeria. Journal of Animal Science and Veterinary Medicine 1(3):74–80.
- Darriba, D., Taboada, G. L., Doallo, R., and Posada, D. 2012. jModelTest 2: More models, new heuristics and parallel computing. Nature Methods 9(8):772. doi/10.1038/nmeth.2109.
- Department of Agriculture-Bureau of Fisheries and Aquatic Resources (DA-BFAR). 2018. Statistics: Commercial fisheries production, 2016. Available at: http://www.bfar.da.gov.ph/profile [accessed on 15 May 2018].
- Dzikowski, R., Paperna, I., and Diamant, A. 2003. Use of fish parasite species richness indices in analyzing anthropogenically impacted coastal marine ecosystems. Helgoland Marine Research 57:220–227. doi/10.1007/s10152-003-0138-2.
- Estaño, L. A., Bordado, A. M. D., and Paller, V. G. V. 2021. Angiostrongylus cantonensis infection of non-native rats in Mount Makiling Forest Reserve, the Philippines. Parasitology 148(2):143–148. doi/10.1017/S0031182020001511.
- Felsenstein, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. Journal of Molecular Evolution 17:368–376.
- Food and Agriculture Organization of the United Nations (FAO). 2018. The State of World Fisheries and Aquaculture 2018 – Meeting the Sustainable Development Goals. Rome. Licence: CC BY-NC-SA 3.0 IGO.
- Food and Agriculture Organization of the United Nations (FAO). 2020. The State of World Fisheries and Aquaculture 2020. Sustainability in action. Rome. https://doi.org/10.4060/ca9229en
- Froese, R., and Pauly, D. Editors. 2019. FishBase. World Wide Web electronic publication. www.fishbase.org
- Gibson, D. I., Bray, R. A., Hunt, D., Georgiev, B. B., Scholz, T., Harris, P. D., and de Jong, Y. 2014. Fauna Europaea: Helminths (Animal Parasitic). Biodiversity Data Journal 2:e1060. doi/10.3897/BDJ.2.e1060.
- Gosselle, O. N., Shir, G. I., Udeh, E. O., Abelau, M., and Imandeh, G. N. 2008. Helminth parasites of Clarias gariepinus and Tilapia zilli at Lamingo Dam, Jos, Nigeria. Science World Journal 3(4):23–27.
- Guindon, S., and Gascuel, O. 2003. PhyML: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 43:174–193.
- Hall, T. A. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symposium Series 41:95–98.
- Hasegawa, M., Kishino, H., and Yano, T. 1985. Dating the human-ape split by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22:160–174.
- Hien, H. V., Dung, B. T., Ngo, H. D., and Doanh, P. N. 2021. First morphological and molecular identification of third-stage larvae of Anisakis typica (Nematoda: Anisakidae) from marine fishes in Vietnamese water. Journal of Nematology 53:e2021–10. doi/10.21307/jofnem-2021-010.
- Kalay, M., Dönmez, A. E., Koyuncu, C. E., Genç, E., and Şahin, G. 2009. Seasonal variation of Hysterothylacium aduncum (Nematoda: Raphidascarididae) infestation in sparid fishes in the Northeast Mediterranean Sea. Turkish Journal of Veterinary and Animal Sciences 33(6):517–523.
- Malek, M., Haseli, M., Mobed, I., Ganjali, M. R., and Mackenzie, K. 2007. Parasites as heavy metal bioindicators in the shark Carcharhinus dussumieri from the Persian Gulf. Parasitology 134(7):1053–1056. doi/10.1017/S0031182007002508.
- Malta, L. S., Paiva, F., Elisei, C., Tavares, L. E. R., and Pereira, F. B. 2018. A new species of Raphidascaris (Nematoda:Raphidascarididae) infecting the fish Gymnogeophagus balzanii (Cichlidae) from the Pantanal wetlands, Brazil and a taxonomic update of the subgenera of Raphidascaris based on molecular phylogeny and morphology. Journal of Helminthology 94:e24. doi/10.1017/S0022149X18001153.
- Mattiucci, S., Farina, V., Campbell, N., MacKenzie, K., Ramos, P., Pinto, A. L., Abaunza, P., and Nascetti, G. 2008. Anisakis spp. larvae (Nematoda: Anisakidae) from Atlantic horse mackerel: Their genetic identification and use as biological tags for host stock characterization. Fisheries Research 89(2):146–151. doi/10.1016/j.fishres.2007.09.032.
- Mattiucci, S., and Nascetti, G. 2006. Molecular systematics, phylogeny and ecology of anisakid nematodes of the genus Anisakis Dujardin, 1845: An update. Parasite 13(2):99–113.
- Mattiucci, S., Nascetti, G., Dailey, M., Webb, S. C., Barros, N. B., Cianchi, R., and Bullini, L. 2005. Evidence for a new species of Anisakis Dujardin, 1845: Morphological description and genetic relationships between congeners (Nematoda: Anisakidae). Systematic Parasitology 61(3):157–171. doi/10.1007/s11230-005-3158-2.
- Mattiucci, S., Paggi, L., Nascetti, G., Portes Santos, C., Costa, G., Di Beneditto, A. P., Ramos, R., Argyrou, M., Cianchi, R., and Bullini, L. 2002. Genetic markers in the study of Anisakis typica (Diesing, 1860): Larval identification and genetic relationships with other species of Anisakis Dujardin, 1845 (Nematoda: Anisakidae). Systematic Parasitology 51:159–170.
- Mishra, T. N., and Chubb, J. C. 2009. The parasite fauna of the fish of the Shropshire Union Canal, Cheshire. Journal of Zoology 157(2):213–224. doi/10.1111/j.1469-7998.1969.tb01698.x.
- Moiseenko, T. I., Megorskii, V. V., Gashkina, N. A., and Kudryavtseva, L. P. 2010. Water pollution effect on population health in an industrial northern region. Water Resources 37:194–203. doi/10.1134/S0097807810020077.
- Narido, C. I., Palla, H. P., Argente, F. A. T., and Geraldino, P. J. L. 2016. Population dynamics and fishery of Roughear Scad Decapterus tabl Berry 1968 (Perciformes: Carangidae) in Camotes Sea, Central Philippines. Asian Fisheries Science 29:14–27.
- Ohshimo, S., Shiraishi, T., Tanaka, H., Yasuda, T., Yoda, M., Ishida, H., and Tomiyasu, S. 2014. Growth and reproductive characteristics of the Roughear Scad Decapterus tabl in the East China Sea. Japan Agricultural Research Quarterly 48(2):245–252.
- Onyedineke, N. E., Obi, U., Ofoegbu, P. U., and Ukogo, I. 2010. Helminth parasites of some freshwater fish from River Niger at Illushi, Edo State, Nigeria. Journal of American Science 6(3):16–21.
- Pampiglione, S., Rivasi, F., Criscuolo, M., De Benedittis, A., Gentile, A., Russo, S., Testini, M., and Villan, M. 2002. Human anisakiasis in Italy: A report of eleven new cases. Pathology – Research and Practice 198(6):429–434. doi/10.1078/0344-0338-00277.
- Petersen, F., Palm, H., Moler, H., and Cuzi, M. A. 1993. Flesh parasites of fish from central Philippine Waters. Diseases of Aquatic Organisms 15:81–86.
- Philippine Statistics Authority (PSA). 2021. Fisheries Situation Report for January to December 2020. Available at: www.psa.gov.ph/sites/default/files[accessed on 15 March 2021].
- Poulin, R., and Morand, S. 2004. Parasite Biodiversity. Pp.216. Washington D.C: Smithsonian Institution Books. ISBN 1 58834 170 4. US$50.00. doi/10.1017/S003118200521908X.
- Quiazon, K. M. A., Santos, M. D., Blatchley, D. D., Aguila, R. D., and Yoshinaga, T. 2021. Molecular and morphological identifications of Anisakis Dujardin, 1845 (Nematoda: Anisakidae) from a rare Deraniyagala’s beaked whale (Mesoplodon hotaula Deraniyagala, 1963) and Blainville’s beaked whale (Mesoplodon densirostris Blainville, 1817) stranded off Southern Philippines. Philippine Journal of Science 150(3):823–835.
- Quiazon, K. M. A., Santos, M. D., and Yoshinaga, T. 2013. Anisakis species (Nematoda: Anisakidae) of Dwarf Sperm Whale Kogia sima (Owen, 1866) stranded off the Pacific coast of southern Philippine Archipelago. Veterinary Parasitology 197(1–2):221–230. doi/10.1016/j.vetpar.2013.05.019.
- Quiazon, K. M. A., Yoshinaga, T., Ogawa, K., and Yukami, R. 2008. Morphological differences between larvae and in vitro-cultured adults of Anisakis simplex (sensu stricto) and Anisakis pegreffii (Nematoda: Anisakidae). Parasitology International 57(4):483–489. doi/10.1016/j.parint.2008.06.003.
- Quiazon, K. M. A. 2016. Anisakis Dujardin, 1845 infection (Nematoda: Anisakidae) in Pygmy Sperm Whale Kogia breviceps Blainville, 1838 from west Pacific region off the coast of Philippine archipelago. Parasitology Research 115:3663–3668. doi/10.1007/s00436-016-5169-0.
- Reiczigel, J., Marozzi, M., Fábián, I., and Rózsa, L. 2019. Biostatistics for parasitologists – A primer to quantitative parasitology. Trends in Parasitology 35(4):277–281. doi/10.1016/j.pt.2019.01.003.
- Safonova, A. E., Voronova, A. N., and Vainutis, K. S. 2021. First report on molecular identification of Anisakis simplex in Oncorhynchus nerka from the fish market, with taxonomical issues within Anisakidae. Journal of Nematology 53:e2021–e2023. doi/10.21307/jofnem-2021-023.
- Saitou, N., and Nei, M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406–425.
- Shamsi, S., and Suthar, J. 2016. A revised method of examining fish for infection with zoonotic nematode larvae. International Journal of Food Microbiology 227:13–16. doi/10.1016/j.ijfoodmicro.2016.03.023.
- Staden, R., Beal, K. F., and Bonfield, J. K. 2000. The Staden Package, 1998. Methods in Molecular Biology. 132:115–130. doi: 10.1385/1-59259-192-2:115.
- Soewarlan, L. C., Suprayitno, E., Hardoko, and Nurysam, H. 2015. A model of rat’s stomach orally infected by live Anisakis typica larvae: A histopathological study. International Journal of PharmTech Research 8(2):221–229.
- Sures, B. 2004. Environmental parasitology: Relevancy of parasites in monitoring environmental pollution. Trends in Parasitology 20(4):170–177. doi/10.1016/j.pt.2004.01.014.
- Swofford, D. L. 2002. PAUP* 4.0b10. Sunderland, MA: Sianuer Associates.
- Tamura, K., and Nei, M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10:512–526.
- Tunya R., Wongsawad, C., Wongsawad, P., and Chai, J.-Y. 2020. Morphological and Molecular Characteristics of Anisakis typica Larvae in Two Species of Threadfin Bream, Nemipterus hexodon and N. japonicus, from the Gulf of Thailand. Korean Journal of Parasitology 58(1):15–25. doi:10.3347/kjp.2020.58.1.15.
- Umehara, A., Kawakami, Y., Ooi H.-K., Uchida, A., Ohmae, H., and Sugiyama, H. 2010. Molecular identification of Anisakis type I larvae isolated from hairtail fish off the coasts of Taiwan and Japan. 143(3):161–165. doi:10.1016/j.ijfoodmicro.2010.08.011.
- Velasquez, C. C. 1972. Fish parasitology and aquaculture management in the Philippines. Available at: https://www.nast.ph
- Williams, H. H., and Mackenzie, K. 2003. Marine parasites as pollution indicators: An update. Parasitology 126Suppl(7):S27–S41.
- Williams, H. H., MacKenzie, K., and McCarthy, A. M. 1992. Parasites as biological indicators of the population biology, migrations, diet, and phylogenetics of fish. Reviews in Fish Biology and Fisheries 2(2): 144–176.
- WoRMS Editorial Board. 2021. World register of marine species. Available at: http://www.marinespecies.org at VLIZ [accessed on 25 March 2021]. doi/10.14284/170.
- Xia, X. 2013. DAMBE5: A comprehensive software package for data analysis in molecular biology and evolution. Molecular Biology and Evolution 30(7): 1720–1728.
- Yao, H., Song, J., Liu, C., Luo, K., Han, J., Li, Y., Pang, X., Xu, H., Zhu, Y., Xiao, P., and Chen, S. 2010. Use of ITS2 region as the universal DNA barcode for plants and animals. PLoS ONE 5(10):e13102. doi/10.1371/journal.pone.0013102.
- Ye, J., Coulouris, G., Zaretskaya, I., Cutcutache, I., Rozen, S., and Madden, T. 2012. Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics 13(134). doi/10.1186/1471-2105-13-134
- Yu, N., Wei, Y. L., Zhang, X., Zhu, N., Wang, Y. L., Zhu, Y., Zhang, Hp., Li, Fm., Yang, L., Sun, J. Q., and Sun, A. D. 2017. Barcode ITS2: A useful tool for identifying Trachelospermum jasminoides and a good monitor for medicine market. Scientific Reports 7:5037. doi/10.1038/s41598-017-04674-w.