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Longitudinal Phenotypic and Antimicrobial Resistance Evolution of Mycobacterium Abscessus Subsp. Abscessus During Chronic Pulmonary Infection in a Patient with Cystic fibrosis Cover

Longitudinal Phenotypic and Antimicrobial Resistance Evolution of Mycobacterium Abscessus Subsp. Abscessus During Chronic Pulmonary Infection in a Patient with Cystic fibrosis

Open Access
|Oct 2026

Figures & Tables

Figure 1.

M. abscessus subs. abscessus visualized by Ziehl–Neelsen staining (A) and auramine fluorescence staining (B). Magnification ×400.

Table 1.

Molecular characterization of M. abscessus subsp. abscessus isolates using the GenoType NTM-DR assay.

IsolateSpecies identificationerm(41) T28rrl mutationrrs mutationMacrolide resistanceAminoglycoside resistance
128/2017M. abscessus subsp. abscessusPresentNot detectedNot detectedYesNo
126/2018M. abscessus subsp. abscessusPresentNot detectedNot detectedYesNo
184/2024M. abscessus subsp. abscessusPresentA2058C*A1408G**YesYes
199/2025M. abscessus subsp. abscessusPresentA2058C*A1408G**YesYes

* A2058C, adenine-to-cytosine substitution at position 2058 of the rrl gene (23S rRNA).

** A1408G, adenine-to-guanine substitution at position 1408 of the rrs gene (16S rRNA).

Table 2.

Minimum inhibitory concentrations (MICs) and susceptibility categories of sequential M. abscessus subsp. abscessus isolates.

Antibiotic/Tested strainsMIC [µg/mL]
128/2017126/2018184/2024199/2025
LZD4 (S)4 (S)4 (S)4 (S)
AMK4 (S)4 (S)≥64 (R)≥64 (R)
CLR1 (S)≥16 (R)≥16 (R)≥16 (R)
SXT8/152 (R)≥8/152 (R)≥8/152 (R)≥8/152 (R)
CIP≥4 (R)≥4 (R)≥4 (R)≥4 (R)
MXF≥8 (R)≥8 (R)≥8 (R)≥8 (R)
IPM≥64 (R)≥64 (R)≥64 (R)≥64 (R)
FOX≥128 (R)≥128 (R)≥128 (R)≥128 (R)
TOB≥16 (R)≥16 (R)≥16 (R)≥16 (R)
DOX≥16 (R)≥16 (R)≥16 (R)≥16 (R)
TGC0.50.50.50.5
BDQ0.50.50.50.5
DLM≥16≥16≥16≥16

[i] AMK - amikacin; BDQ - bedaquiline; CIP - ciprofloxacin; CLR - clarithromycin; DLM - delamanid; DOX - doxycycline, FOX - cefoxitin; IPM - imipenem; LZD - linezolid; MXF - moxifloxacin; SXT - trimethoprim/sulfamethoxazole; TGC - tigecycline; TOB – tobramycin, S – susceptible, R – resistance.

Figure 2.

Representative rough and smooth colony morphotypes of Mycobacterium abscessus subsp.abscessus on Middlebrook 7H10 agar. Rough colonies (A) show a dry, irregular, and wrinkled appearance, whereas smooth colonies (B) are moist, shiny, and have regular margins.

Table 3.

Morphotype characterization and biofilm-forming ability of M. abscessus isolates assessed using Middlebrook 7H10 agar, and Crystal Violet staining methods.

Strains No.SpeciesMorphotype7H10 agarBiofilm forming
Crystal violet staining method
OD595OD595/OD595 NC Ratio *Characterization
128/2017M. abscessus subsp. abscessusRough4.893.74moderate biofilm former
126/2018M. abscessus subsp. abscessusRough3.783.15moderate biofilm former
184/2024M. abscessus subsp. abscessusMixed5.984.63strong biofilm former
199/2025M. abscessus subsp. abscessusMixed5.984.96strong biofilm former

[i] OD595/OD595NC ratio – isolates were classified as non-biofilm producers (OD ≤ ODc), weak biofilm producers (ODc < OD ≤ 2×ODc), moderate biofilm producers (2×ODc < OD ≤ 4×ODc), or strong biofilm producers (OD > 4×ODc). 7H10 – Middlebrook 7H10 agar.

Figure 3.

Two-dimensional and three-dimensional FT-IR spectral profiles of the analyzed isolates.

Figure 4.

Dendrogram showing the degree of phenotypic similarity among M. abscessus isolates collected between 2017 and 2025, generated based on FT-IR spectra using the IR Biotyper system.

DOI: https://doi.org/10.2478/am-2026-0014 | Journal eISSN: 2545-3149 | Journal ISSN: 0079-4252
Language: English, Polish
Page range: 161 - 173
Submitted on: Jul 2, 2026
Accepted on: Sep 14, 2026
Published on: Oct 13, 2026
Published by: Polish Society of Microbiologists
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year

© 2026 Katarzyna Kania, Katarzyna Wójcik, Magdalena Grzesiak, Adrian Szczepański, Iwona Gross-Sondej, Krzysztof Sładek, Karolina Klesiewicz, published by Polish Society of Microbiologists
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.