References
- Kliebe C, Nies B, Meyer J, Tolxdorf-Neutzling R, Wiedemann B. Evolution of plasmid encoded resistance to broad-spectrum cephalosporins. Antimicrob Agents Chemother 1985;8:302–7. doi: 10.1128/aac.28.2.302
- Bradford PA. Extended-spectrum β-lactamases in the 21st Century: Characterization, epidemiology, and detection of this important resistance threat. Clin Microbiol Rev 2001;14:933–51. doi: 10.1128/CMR.14.4.933-951.2001
- Bonnin RA, Nordmann P, Potron A, Lecuyer H, Zahar JR, Poirel L. Carbapenem-hydrolyzing GES-type extended-spectrum β-lactamase in Acinetobacter baumannii. Antimicrob Agents Chemother 2011;55:349–54. doi: 10.1128/AAC.00773-10
- Nordmann P, Guibert M. Extended-spectrum β-lactamases in Pseudomonas aeruginosa. J Antimicrob Chemother 1998;42:128–31. doi: 10.1093/jac/42.2.128
- Rossolini GM, D’Andrea MM, Mugnaioli C. The spread of CTX-M-type extended-spectrum β-lactamases. Clin Microbiol Infect 2008;14:33–41. doi: 10.1111/j.1469-0691.2007.01867.x
- Bonnet R. Growing group of extended-spectrum β-lactamases: the CTX-M enzymes. Antimicrob Agents Chemother 2004;48:1–14. doi: 10.1128/AAC.48.1.1-14.2004
- Livermore DM, Canton R, Gniadkowski M, Nordmann P, Rossolini GM, Arlet G, Ayala J, Coque TM, Kern-Zdanowicz I, Luzzaro F, Poirel L, Woodford N. CTX-M: changing the face of ESBLs in Europe. J Antimicrob Chemother 2007;59:165–74. doi: 10.1093/jac/dkl483
- Pitout JD, Nordmann P, Laupland KB, Poirel L. Emergence of Enterobacteriaceae producing extended-spectrum beta-lactamases (ESBLs) in the community. J Antimicrob Chemother 2005;56:52–9. doi: 10.1093/jac/dki166
- Poirel L, Madec JY, Lupo A, Schink AK, Kieffer N, Nordmann P, Schwarz S. Antimicrobial Resistance in Escherichia coli. Microbiol Spectr 2018;6(4). doi: 10.1128/microbiolspec. ARBA-0026-2017
- Jacoby GA. AmpC β-lactamases. J Clin Microbiol 2009;22:161–82. doi: 10.1128/CMR.00036-08
- Liu JH, Wei SY, Ma JY, Zeng ZL, Lü DH, Yang GX, Chen ZL. Detection and characterisation of CTX-M and CMY-2 beta-lactamases among Escherichia coli isolates from farm animals in Guangdong Province of China. Int J Antimicrob Agents 2007;29:576–81. doi: 10.1016/j.ijantimicag.2006.12.015
- Cortés P, Blanc V, Mora A, Dahbi G, Blanco JE, Blanco M, López C, Andreu A, Navarro F, Alonso MP, Bou G, Blanco J, Llagostera M. Isolation and characterization of potentially pathogenic antimicrobial-resistant Escherichia coli strains from chicken and pig farms in Spain. Appl Environ Microbiol 2010;76:2799–805. doi: 10.1128/AEM.02421-09
- Ewers C, Bethe A, Semmler T, Guenther S, Wieler LH. Extended-spectrum β-lactamase-producing and AmpC-producing Escherichia coli from livestock and companion animals, and their putative impact on public health: a global perspective. Clin Microbiol Infect 2012;18:646–55. doi: 10.1111/j.1469-0691.2012.03850
- Ilyas S, Rasool MH, Arshed MJ, Qamar MU, Aslam B, Almatroudi A, Khurshid M. The Escherichia coli sequence type 131 harboring extended-spectrum beta-lactamases and carbapenemases genes from poultry birds. Infect Drug Resist 2021;14:805–13. doi: 10.2147/IDR.S296219
- Schink AK, Kadlec K, Kaspar H, Mankertz J, Schwarz S. Analysis of extended-spectrum-β-lactamase-producing Escherichia coli isolates collected in the GERM-Vet monitoring programme. J Antimicrob Chemother 2013;68:1741–9. doi: 10.1093/jac/dkt123
- Briñas L, Zarazaga M, Sáenz Y, Ruiz-Larrea F, Torres C. Beta-lactamases in ampicillin-resistant Escherichia coli isolates from foods, humans, and healthy animals. Antimicrob Agents Chemother 2002;46:3156–63. doi: 10.1128/aac.46.10.3156-3163.2002
- Vinueza-Burgos C, Ortega-Paredes D, Narváez C, De Zutter L, Zurita J. Characterization of cefotaxime resistant Escherichia coli isolated from broiler farms in Ecuador. PLoS One 2019;14:e0207567. doi: 10.1371/journal.pone.0207567
- Tonu MS, Sufian S, Sarker, Kamal MM, Rahman MH, Hossain MM. Pathological study on Colibacillosis in chickens and detection of Escherichia coli by PCR. Bangl J Vet Med 2011;9:17–25. doi: 10.3329/bjvm.v9i1.11205
- The Clinical and Laboratory Standard Institute (CLSI). Performance Standards for Antimicrobial Susceptibility Testing. 22nd Informational Supplement. Approved standard M100-S22. Wayne (PA): CLSI; 2016.
- Jarlier V, Nicolas MH, Fournier G, Philippon A. Extended broad-spectrum β-lactamases conferring transferable resistance to newer β-lactam agents in Enterobacteriaceae: hospital prevalence and susceptibility patterns. Rev Infect Dis 1988;10:867–78. doi: 10.1093/clinids/10.4.867
- Van der Zwaluw K, de Haan A, Pluister GN, Bootsma HJ, de Neeling AJ, Schouls LM. The carbapenem-inacitvation method (CIM) a simple and low-cost alternative for the Carba NP test to assess phenotypic carbapenemase activity in Gram-negative rods. PloS One 2015;10(3):e0123690. doi: 10.1371/journal. pone.0123690
- Coudron PE. Inhibitor-based methods for detection of plasmid-mediated AmpC β-lactamases in Klebsiella spp., Escherichia coli and Proteus mirabilis. J Clin Microbiol 2005;43:4163–7. doi: 10.1128/JCM.43.8.4163-4167.2005
- Elwell LP, Falkow S. The characterization of R plasmids and the detection of plasmid-specified genes. U: Lorian V, editor. Antibiotics in laboratory medicine. 2nd ed. Baltimore (MD): Williams and Wilkins; 1986. p. 683–721.
- Dashti AA, Jadaon MM, Abdulsamad AM, Dashti HM. Heat treatment of bacteria: A simple method of DNA extraction for molecular techniques. Kuwait Med J 2009;41:117–22.
- Arlet G, Brami G, Décrè D, Flippo A, Gaillot O, Lagrange PH, Philippon A. Molecular characterization by PCR restriction fragment polymorphism of TEM β-lactamases. FEMS Microbiol Lett 1995;134:203–8. doi: 10.1111/j.1574-6968.1995.tb07938.x
- Nüesch-Inderbinen MT, Hächler H, Kayser FH. Detection of genes coding for extended-spectrum SHV β-lactamases in clinical isolates by a molecular genetic method, and comparison with the E test. Eur J Clin Microbiol Infect Dis 1996;15:398–402. doi: 10.1007/BF01690097
- Woodford N, Ward ME, Kaufmann ME, Turton J, Fagan EJ, James D, Johnson AP, Pike R, Warner M, Cheasty T, Pearson A, Harry S, Leach JB, Loughrey A, Lowes JA, Warren RE, Livermore DM. Community and hospital spread of Escherichia coli producing CTX-M extended-spectrum β-lactamases in the UK. J Antimicrob Chemother 2004;54:735–43. doi: 10.1093/jac/dkh424
- Pagani L, Mantengoli E, Migliavacca R, Nucleo E, Pollini S, Spalla M, Daturi R, Romero E, Rossolini GM. Multifocal detection of multidrug-resistant Pseudomonas aeruginosa producing PER-1 extended-spectrum β-lactamase in Northern Italy. J Clin Microbiol 2004;42:2523–9. doi: 10.1128/JCM.42.6.2523-2529.2004
- Robicsek A, Strahilevitz J, Sahm DF, Jacoby GA, Hooper DC. The world wide emergence of plasmid-mediated quinolone resistance. Lancet Infect Dis 2006;6:629–40. doi: 10.1016/S1473-3099(06)70599-0
- Woodford N, Fagan EJ, Ellington MJ. Multiplex PCR for rapid detection of genes encoding CTX-M extended-spectrum β-lactamases. J Antimicrob Chemother 2006;57:154–5. doi: 10.1093/jac/dki412
- Qiagen. QIAquick® Spin Handbook [displayed 26 October 2021]. Available at
https://www.qiagen.com/us/resources/resourcedetail?id=95f10677-aa29-453d-a222-0e19f01ebe17&lang=en - Saladin M, Cao VT, Lambert T, Donay JL, Herrmann JL, Ould-Hocine Z, Verdet C, Delisle F, Philippon A, Arlet G. Diversity of CTX-M β-lactamases and their promoter regions from Enterobacteriaceae isolated in three Parisian hospitals. FEMS Microbiol Lett 2002;209:161–8. doi: 10.1111/j.1574-6968.2002.tb11126.x
- Qiagen. QIAGEN® Plasmid Purification Handbook (February 2021) [displayed 26 October 2021]. Available at
https://www.qiagen.com/us/resources/download.aspx?id=0bd0c5fb-c271-43e7-af43-32d539374fa9&lang=en - Carattoli A, Bertini A, Villa L, Falbo V, Hopkins KL, Threlfall EJ. Identification of plasmids by PCR-based replicon typing. J Microbiol Methods 2005;63:219–28. doi: 10.1016/j. mimet.2005.03.018
- Carattoli A, Sieffert S, Schwendener S, Perreten V, Endimiani A. Differentiation of IncL and IncM plasmids associated with the spread of clinically relevant antimicrobial resistance. PloS One 2015;10(5):e0123063. doi: 10.1371/journal.pone.0123063
- Wirth T, Falush D, Lan R, Colles F, Mensa P, Wieler LH, Karch H, Reeves PR, Maiden MC, Ochman H, Achtman M. Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol 2006;60:5:1136–51. doi: 10.1111/j.1365-2958.2006.05172.x
- Seo KW, Lee YJ. The occurrence of CTX-M-producing E. coli in the broiler parent stock in Korea. Poult Sci 2021;100:1008–15. doi: 10.1016/j.psj.2020.09.005
- Ibrahimagić A, Bedenić B, Kamberović F, Uzunović S. High prevalence of CTX-M-15 and first report of CTX-M-3, CTX-M-22, CTX-M-28 and plasmid-mediated AmpC beta-lactamase producing Enterobacteriaceae causing urinary tract infections in Bosnia and Herzegovina in hospital and community settings. J Jnfect Chemot 2015;21:363–9. doi: 10.1016/j.jiac.2015.01.003
- Huijbers PMC, Graat EAM, Haenen APJ, van Santen MG, van Essen-Zandbergen A, Mevius DJ, van Duijkeren E, van Hoek AHAM. Extended-spectrum and AmpC β-lactamase-producing Escherichia coli in broilers and people living and/or working on broiler farms: prevalence, risk factors and molecular characteristics. J Antimicrob Chemother 2014;69:2669–75. doi: 10.1093/jac/dku178
- Aworh MK, Kwaga J, Okolocha E, Harden L, Hull D, Hendriksen RS, Thakur S. Extended-spectrum ß-lactamase-producing Escherichia coli among humans, chickens and poultry environments in Abuja, Nigeria. One Health Outlook 2020;2:8. doi: 10.1186/s42522-020-00014-7
- Cardozo MV, Liakopoulos A, Brouwer M, Kant A, Pizauro LJL, Borzi MM, Mevius D, de Ávila FA. Occurrence and molecular characteristics of extended-spectrum beta-lactamase-producing Enterobacterales recovered from chicken, chicken meat, and human infections in Sao Paulo State, Brazil. Front Microbiol 2021;12:628738. doi: 10.3389/fmicb.2021.628738
- Huijbers PMC, Graat EAM, van Hoek AHAM, Veenman C, de Jong MCM, van Duijkeren E. Transmission dynamics of extended-spectrum β-lactamase and AmpC β-lactamase-producing Escherichia coli in a broiler flock without antibiotic use. Prev Vet Med 2016;131:12–9. doi: 10.1016/j. prevetmed.2016.07.001
- Huijbers PM, van Hoek AH, Graat EA, Haenen AP, Florijn A, Hengeveld PD, van Duijkeren E. Methicillin-resistant Staphylococcus aureus and extended-spectrum and AmpC β-lactamase-producing Escherichia coli in broilers and in people living and/or working on organic broiler farms. Vet Microbiol 2015;176:120–5. doi: 10.1016/j.vetmic.2014.12.010
- Balázs B, Nagy JB, Tóth Z, Nagy F, Károlyi S, Turcsányi I, Bistyák A, Kálmán A, Sárközi R, Kardos G. Occurrence of Escherichia coli producing extended spectrum β-lactamases in food-producing animals. Acta Vet Hung 2021;69:211–5. doi: 10.1556/004.2021.00036
- Damjanova I, Tóth A, Pászti J, Hajbel-Vékony G, Jakab M, Berta J, Milch H, Füzi M. Expansion and countrywide dissemination of ST11, ST15 and ST147 ciprofloxacin-resistant CTX-M-15-type beta-lactamase-producing Klebsiella pneumoniae epidemic clones in Hungary in 2005-the new ‘MRSAs’? J Antimicrob Chemother 2008;62:978–85. doi: 10.1093/jac/dkn287
- Edelstein M, Pimkin M, Palagin I, Edelstein I, Stratchounski L. Prevalence and molecular epidemiology of CTX-M extended-spectrum beta-lactamase-producing Escherichia coli and Klebsiella pneumoniae in Russian hospitals. Antimicrob Agents Chemother 2003;47:3724–32. doi: 10.1128/AAC.47.12.3724-3732.2003
- Cloeckaert A, Praud K, Doublet B, Bertini A, Carattoli A, Butaye P, Imberechts H, Bertrand S, Collard JM, Arlet G, Weill FX. Dissemination of an extended-spectrum-beta-lactamase blaTEM-52 gene-carrying IncI1 plasmid in various Salmonella enterica serovars isolated from poultry and humans in Belgium and France between 2001 and 2005. Antimicrob Agents Chemother 2007;51:1872–5. doi: 10.1128/AAC.01514-06
- Literacka E, Bedenić B, Baraniak A, Fiett J, Tonkić M, Jajić-Benčić I, Gniadkowski M. blaCTX-M genes in Escherichia coli from Croatian hospitals are located in new (blaCTX-M-3) and widely spread (blaCTX-M-3a, blaCTX-M-15) genetic structures. Antimicrob Agents Chemother 2009;53:1630–5. doi: 10.1128/AAC.01431-08