References
- AHKAMI, A.H. – WHITE, R.A. – HANDAKUMBURA, P.P. – JANSSON, C. 2017. Rhizosphere engineering: Enhancing sustainable plant ecosystem productivity. In Rhizosphere, vol. 3, no. 2, pp. 233 – 243. DOI: 10.1016/j.rhi-sph.2017.04.01210.1016/j.rhi-sph.2017.04.012
- ALLARD, S.M. – WALSH, C.S. – WALLIS, A.E. – OT-TESEN, A.R. – BROWN, E.W. – MICALLEF, S.A. 2016. Solanum lycopersicum (tomato) hosts robust phyllosphere and rhizosphere bacterial communities when grown in soil amended with various organic and synthetic fertilizers. In Science of the Total Environment, vol. 573, pp. 555 – 563. DOI: 10.1016/j.scitotenv.2016.08.15710.1016/j.scitotenv.2016.08.157
- BERENDSEN, R.L. – PIETERSE, C.M.J. – BAKKER, P.A.H.M. 2012. The rhizosphere microbiome and plant health. In Trends in Plant Science, vol. 17, no. 8, pp. 478 – 486. DOI: 10.1016/j.tplants.2012.04.00110.1016/j.tplants.2012.04.001
- CAI, F. – PANG, G. – MIAO, Y. – LI, R. – LI, R. – SHEN, Q. – CHEN, W. 2017. The nutrient preference of plants influences their rhizosphere microbiome. In Applied Soil Ecology, vol. 110, pp. 146 – 150. DOI: 10.1016/j.apsoil.2016.11.00610.1016/j.apsoil.2016.11.006
- CORDERO-RAMÍREZ, J.D. – LÓPEZ-RIVERA, R. – CALDERÓN-VÁZQUEZ, C.L. – FIGUEROA-LÓPEZ, A.MI. – MARTÍNEZ-ÁLVAREZ, J.C. – LEYVA-MADRIGAL, K.Y. – CERVANTES-GÁMEZ, R.G. – MALDONA-DO-MENDOZA, I.E. 2012. Microorganismos asociados a la rizosfera de jitomate en un agroecosistema del valle de Guasave, Sinaloa, México. In Revista Mexicana de Biodiversidad, vol. 83, no. 3, pp. 712 – 730. DOI: 10.7550/rmb.1789710.7550/rmb.17897
- EDGAR, R.C. 2013. UPARSE: highly accurate OTU sequences from microbial amplicon reads. In Nature Methods, vol. 10, pp. 996 – 998. DOI: 10.1038/nmeth.2604
- EDGAR, R.C. 2016. SINTAX, a Simple Non-Bayesian Taxonomy Classifier for 16S and ITS Sequences. bioRxiv., DOI: 10.1101/07416110.1101/074161
- FADROSH, D.W. – MA, B. – GAJER, P. – GAJER, P. – SENGAMALAY, N. – OTT, S. – BROTMAN, R.M. – RAVEL, J. 2014. An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform. In Microbiome, vol. 2, no. 1, pp. 6. DOI: 10.1186/2049-2618-2-610.1186/2049-2618-2-6
- FAUTH, E. – BERNARDO, J. – CAMARA, M. – RESETARITS, W.J. – VAN BUSKIRK, J. – MCCOLLUM, S.A. 1996. Simplifying the Jargon of community ecology: A conceptual approach. In The American Naturalist, vol. 147, pp. 282 – 286.
- HAMMER, Ø. – HARPER, D.A.T. – RYAN, P.D. 2001. PAST: Paleontological statistics software package for education and data analysis. In Palaeontologia Electronica, vol. 4, pp. 1 – 9.
- HUGHES, J.B. – HELLMANN, J.J. 2005. The application of rarefaction techniques to molecular inventories of microbial diversity. In Methods in Enzymology, vol. 397, pp. 292 – 308. https://doi.org/10.1016/S0076-6879(05)97017-110.1016/S0076-6879(05)97017-1
- IGOLKINA, А.А. – GREKHOV, G.A. – PERSHINA, E.V. – SAMOSOROVA, G.G. – LEUNOVA, V.M. – SEMENOVA, A.N. – BATURINA, O.A. – KABILOV, M.R. – ANDRONOV, E.E. 2018. Identifying components of mixed and contaminated soil samples by detecting specific signatures of control 16S rRNA libraries. In Ecoogical Indicators, vol. 94, no.1, pp. 446 – 453. DOI: 10.1016/j.ecolind.2018.06.06010.1016/j.ecolind.2018.06.060
- IUSS WORKING GROUP. 2014. WRB, World Reference Base for Soil Resources. International soil classification system for naming soils and creating legends for soil maps. Rome: FAO.
- KHAN, W. – BAKHT, J. – NAIR, M.G. – UDDIN, M.N. – SHAFI, M. 2018. Extraction and isolation of important bioactive compounds from the fruit of Physalis ixocarpa. In Pakistan Journal of Pharmaceutical Sciences, vol. 31, no. 6, pp. 2463 – 2469.
- KHAN, W. – BAKHT, J. – SHAFI, M. 2016. Antimicrobial potentials of different solvent extracted samples from Physalis ixocarpa. In Pakistan Journal of Pharmaceutical Sciences, vol. 29, no. 2, pp. 467 – 475.
- LEE, S.A. – PARK, J. – CHU, B. – KIM, J.M. – JOA, J.H. – SANG, M.K. – SONG, J. – WEON, H.Y. 2016. Comparative analysis of bacterial diversity in the rhizosphere of tomato by culture-dependent and -independent approaches. In Journal of Microbioogy, vol. 54, no. 12, pp. 823 – 831. DOI: 10.1007/s12275-016-6410-310.1007/s12275-016-6410-3
- LI, B. – CAO, Y. – GUAN, X. – LI, Y. – HAO, ZH. – HU, W. – CHEN, L. 2019. Microbial assessments of soil with a 40-year history of reclaimed wastewater irrigation. In Science of the Total Environment, vol. 651, no. 1, pp. 696 – 705. DOI: 10.1016/j.scitotenv.2018.09.19310.1016/j.scitotenv.2018.09.193
- MARQUEZ-SANTACRUZ, H.A. – HERNANDEZ-LEON, R. – OROZCO-MOSQUEDA, M.C. – VELAZQUEZ-SEPULVEDA, I. – SANTOYO, G. 2010. Diversity of bacterial endophytes in roots of Mexican husk tomato plants (Physalis ixocarpa) and their detection in the rhizosphere. In Genetic and Molecular Research, vol. 9, no. 4, pp. 2372 – 2380. DOI: 10.4238/vol9-4gmr92110.4238/vol9-4gmr921
- MARTINES, M. – VARGAS-PONCE, O. – RODRIGUEZ, A. – CHIANG, F. – OCEGUEDA, S. 2017. Solanaceae family in Mexico. In Botanical Sciences, vol. 95, no. 1, pp. 1–15. DOI: 10.17129/botsci.658
- MORALES-CONTRERAS, B.E. – CONTRERAS-ESQUIVEL, J.C. – WICKER, L. – OCHOA-MARTÍNEZ, L.A. – MORALES-CASTRO, J. 2017. Husk Tomato (Physalis ixocarpa Brot.) Waste as a Promising Source of Pectin: Extraction and Physicochemical Characterization. In Journal of Food Science, vol. 82, no. 7, pp. 1594 – 1601. DOI: 10.1111/1750-3841.1376810.1111/1750-3841.13768
- NAUMOVA, N.B. – SAVENKOV, O.A. – NECHAEVA, T.V. – FOTEV, Y.V. 2019. Yield and fruit properties of husk tomato (Physalis phyladelphica) cultivars grown in the open field in the South of West Siberia. In Horticulturae, vol. 5, no. 1, pp. 19. DOI: 10.3390/horticulturae501001910.3390/horticulturae5010019
- RAMÍREZ-GODINA, F. – ROBLEDO-TORRES, V. – FOROUGHBAKHCH-POURNABAV, R. – BENAVIDES-MENDOZA, A. – HERNÁNDEZ-PIÑERO, J.L. – REYES-VALDES, M.H. – ALVARADO-VÁZQUEZ, M.A. 2013. Yield and fruit quality evaluation in husk tomato autotetraploids (Physalis ixocarpa) and diploids. In Australian Journal of Crop Science, vol. 933, pp. 933 – 940.
- SALEEM, M. – LAW, A.D. – SAHIB, M.R. – PERVAIZ, Z.H. – ZHANG, Q. 2018. Impact of root system architecture on rhizosphere and root microbiome. In Rhizosphere, vol. 6, no. 1, pp. 47 – 51. DOI: 10.1016/j.rhisph.2018.02.00310.1016/j.rhisph.2018.02.003
- SMITH, R. – JIMENEZ, M.– CANTWELL, M. 1999. Tomatillo production in California. Available at http://anrcatalog.ucanr.edu/pdf/7246.pdf (accessed July 23, 2019)
- VALDIVIA-MARES, L.E. – RODRÍGUEZ ZARAGOZA, F.A. – SÁNCHEZ GONZÁLEZ, J.J. – VARGAS-PONCE, O. 2016. Phenology, agronomic and nutritional potential of three wild husk tomato species (Physalis, Solanaceae) from Mexico. In Scientia Horticulturae, vol. 200, pp. 83 – 94. DOI: 10.1016/j.scienta.2016.01.00510.1016/j.scienta.2016.01.005
- WALLENSTEIN, M.D. 2017. Managing and manipulating the rhizosphere microbiome for plant health: A systems approach. In Rhizosphere, vol. 3, no. 2, pp. 230 – 232. DOI: 10.1016/j.rhisph.2017.04.00410.1016/j.rhisph.2017.04.004
- WANG, Q. – GARRITY, G.M. – TIEDJE, J.M. – COLE, J.R. 2007. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. In Applied and Environmental Microbiology, vol. 73, pp. 5261 – 5267. DOI: 10.1128/AEM.00062-0710.1128/AEM.00062-07
- WANG, M. – CHEN, L. – LI, Y. – CHEN, L. – LIU, ZH. – WANG, X. – YAN, P. – QIN, S. 2018. Responses of soil microbial communities to a short-term application of seaweed fertilizer revealed by deep amplicon sequencing. In Applied Soil Ecology, vol. 125, pp. 288 – 296. DOI: 10.1016/j.ap-soil.2018.02.01310.1016/j.ap-soil.2018.02.013
- XUE, D. – CHRISTENSON, R. – GENGER, R. – GEVENS, A. – LANKAU, R.A. 2018. Soil microbial communities reflect both inherent soil properties and management practices in Wisconsin potato fields. In American Journal of Potato Research, vol. 95, pp. 696. DOI: 10.1007/s12230-018-9677-610.1007/s12230-018-9677-6
- ZAMORA-TAVARES, P. – VARGAS-PONCE, O. – SANCHEZ-MARTINEZ, J. – CABRERA-TOLEDO, D. 2015. Diversity and genetic structure of the husk tomato (Physalis philadelphica Lam.) in Western Mexico. In Genetic Resources and Crop Evolution, vol. 62, pp. 141 – 153. DOI: 10.1007/s10722-014-0163-910.1007/s10722-014-0163-9
- ZHAO, Q. – ZENG, D.H. – FAN, Z.-P. 2010. Nitrogen and phosphorus transformations in the rhizospheres of three tree species in a nutrient-poor sandy soil. In Applied Soil Ecology, vol. 46, pp. 341 – 346. DOI: 10.1016/j.apsoil.2010.10.00710.1016/j.apsoil.2010.10.007
- ZHENG, M. – GUO, J. – XU, J. – YANG, K. – TANG, R. – GU, X. – LI, H. – CHEN, L. 2019. Ixocarpalactone A from dietary tomatillo inhibits pancreatic cancer growth by targeting PHGDH. In Food & Function, vol. 10, no. 6, pp. 3386 – 3395. DOI: 10.1039/c9fo00394k