References
- Ahmed, M., van de Vossenberg, B., Cornelisse, C. and Karssen, G. 2013. On the species status of the root–knot nematode Meloidogyne ulmi Palmisano and Ambrogioni, 2000 (Nematoda, Meloidogynidae). ZooKeys 362:1–27, doi: 10.3897/zookeys.362.6352.
- Álvarez-Ortega, S., Brito, J. A. and Subbotin, S. A. 2019. Multigene phylogeny of root-knot nematodes and molecular characterization of Meloidogyne nataliei Golden, Rose & Bird, 1981 (Nematoda: Tylenchida). Scientific Reports 9:11788, doi: 10.1038/s41598-019-48195-0.
- Bert, W., Leliaert, F., Vierstraete, A. R., Vanfleteren, J. R. and Borgonie, G. 2008. Molecular phylogeny of the Tylenchina and evolution of the female gonoduct (Nematoda: Rhabditida). Molecular Phylogenetics and Evolution 48:728–744, doi: 10.1016/j.ympev.2008.04.011.
- Cherry, T., Szalanski, A. L., Todd, T. C. and Powers, T. O. 1997. The internal transcribed spacer region of Belonolaimus (Nemata: Belonolaimidae). Journal of Nematology 29:23–29.
- Darriba, D., Taboada, G. L., Doallo, R. and Posada, D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9:772, doi: 10.1038/nmeth.2109.
- De Ley, P., Félix, M. A., Frisse, L. M., Nadler, S. A., Sternberg, P. W. and Thomas, W. K. 1999. Molecular and morphological characterisation of two reproductively isolated species with mirror-image anatomy (Nematoda: Cephalobidae). Nematology 1:591–612, doi: 10.1163/156854199508559.
- DeRycke, S., Remerie, T., Vierstraete, A., Backeljau, T., Vanfleteren, J. Vincx, M. and Moens, T. 2005. Mitochondrial DNA variation and cryptic speciation within the free-living marine nematode Pellioditis marina. Marine Ecology Progress Series 300:91–103, doi: 10.3354/meps300091.
- Eisenback, J. D., Graney, L. S. and Vieira, P. 2016. First report of the apple root-knot nematode (Meloidogyne mali) in North America, found parasitizing euonymus in New York. Plant Disease 101:510, doi: 10.1094/PDIS-06-16-0894-PDN.
- Georgi, L. L. and Abbott, G. A. 1998. Variation in ribosomal genes in Meloidogyne arenaria. Fundamental and Applied Nematology 21:685–694, doi: 10.1159/000021665.
- Griffiths, B. S., Donn, S., Neilson, R. and Daniell, T. J. 2006. Molecular sequencing and morphological analysis of a nematode community. Applied Soil Ecology 32:325–337, doi: 10.1016/j.apsoil.2005.07.006.
- Gu, J. and He, J. 2015. First report of the apple root-knot nematode, Meloidogyne mali, infecting crape myrtle from Japan. Plant Disease 99:893, doi: 10.1094/PDIS-11-14-1145-PDN.
- Gu, J., Wang, J., Shao, F., Gao, F. and Ge, J. 2013. Identification of Meloidogyne mali detected in Acer palmatum from japan. Plant Quarantine 27:43–49, doi: CNKI:SUN:ZWJY.0.2013-01-014.
- Hartman, K. M. and Sasser, J. N. 1985. “Identification of Meloidogyne species on the basis of differential host test and perineal-pattern morphology”, In Barker, K. R., Carter, C. C. and Sasser, J. N. (Eds), An Advanced Treatise on Meloidogyne, Vol. II methodology North Carolina University Graphics, North Carolina.
- Holterman, M., van der Wurff, A., van den Elsen, S., van Megen, H., Bongers, T., Holovachov, O., Bakker, J. and Helder, J. 2006. “Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades”, Molecular Biology and Evolution 23:1792–1800, doi: 10.1093/molbev/msl044Itoh.
- Janssen, T., Karssen, G., Topalović, O., Coyne, D. and Bert, W. 2017. Integrative taxonomy of root-knot nematodes reveals multiple independent origins of mitotic parthenogenesis. PLoS ONE 12:e0172190, doi: 10.1371/journal.pone.0172190.
- Karssen, G., van Keulen, I., van Hoenselaar, T. and van Heese, E. 2008. Meloidogyne ulmi: een nieuwe iepen parasiet in Nederland?. Boomzorg 1:62–63.
- Katoh, K. and Standley, D. M. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30:772–780, doi: 10.1093/molbev/mst010.
- Li, S. and Yu, Z. 1991. Investigation on plant root-knot nematodes and pathogen identification of Henan. Journal of Henan Agricultural University 25:169–174, doi: 10.16445/j.cnki.1000-2340.1991.02.008.
- Li, H., Trinh, P. Q., Waeyenberge, L. and Moens, M. 2008. Bursaphelenchus chengi sp. n. (Nematoda: Parasitaphelenchidae) isolated at Nanjing, China, in packaging wood from Taiwan. Nematology 10:335–346, doi: 10.1163/156854108783900294.
- Lunt, D. H. 2008. Genetic tests of ancient asexuality in root knot nematodes reveal recent hybrid origins. BMC Evolutionary Biology 8:194–, doi: 10.1186/1471-2148-8-194.
- Miller, M., Pfeiffer, W. and Schwartz, T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. 2010 Gateway Computing Environments Workshop (GCE), doi: 10.1109/GCE.2010.5676129.
- Nadler, S. A., Carreno, R. A., Adams, B. J., Kinde, H., Baldwin, J. G. and Mundo-Ocampo, M. 2003. Molecular phylogenetics and diagnosis of soil and clinical isolates of Halicephalobus gingivalis (Nematoda: Cephalobina: Panagrolaimoidea), an opportunistic pathogen of horses. International Journal for Parasitology 33:1115–1125, doi: 10.1016/S0020-7519(03)00134-6.
- Ohshima, Y. and Ichinohe, M. 1969. A root-knot nematode, Meloidogyne mali n. sp. on apple-tree from Japan (Tylenchida: Heteroderidae). Applied Entomology and Zoology 4:194–202, doi: 10.1303/aez.4.194.
- Palmisano, A. and Ambrogioni, L. 2000. Meloidogyne ulmi sp. n., a root-knot nematode from elm. Nematologia Mediterranea 28:279–293.
- Pereira, T. J. and Baldwin, J. G. 2016. Contrasting evolutionary patterns of 28S and ITS rRNA genes reveal high intragenomic variation in Cephalenchus (Nematoda): implications for species delimitation. Molecular Phylogenetics Evolution 98:244–260, doi: 10.1016/j.ympev.2016.02.016.
- Prior, T., Tozer, H., Yale, R., Jones, E., Lawson, R., Jutson, L., Correia, M., Stubbs, J., Hockland, S. and Karssen, G. 2019. First report of Meloidogyne mali causing root galling to elm trees in the UK. New Disease Reports 39:10, doi: 10.5197/j.2044-0588.2019.039.010.
- Qing, X., Wang, M., Karssen, G., Bucki, P., Bert, W. and Braun-Miyara, S. 2020a. PPNID: a reference database and molecular identification pipeline for plant-parasitic nematodes. Bioinformatics 36:1052–1056, doi: 10.1093/bioinformatics/btz707.
- Qing, X., Bik, H., Yergaliyev, T. M., Gu, J., Fonderie, P., Brown-Miyara, S., Szitenberg, A. and Bert, W. 2020b. Widespread prevalence but contrasting patterns of intragenomic rRNA polymorphisms in nematodes: Implications for phylogeny, species delimitation and life history inference. Molecular Ecology Resources 20:318–332, doi: 10.1111/1755-0998.13118.
- Ronquist, F. and Huelsenbeck, J. P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574, doi: 10.1093/bioinformatics/btg180.
- Seinhorst, J. W. 1959. A rapid method for the transfer of nematodes from fixative to anhydrous glycerin. Nematologica 4:67–69, doi: 10.1163/187529259X00381.
- Stamatakis, A., Hoover, P. and Rougemont, J. 2008. A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 57:758–771, doi: 10.1080/10635150802429642.
- Van Den Berg, E., Palomares-Rius, J. E., Vovlas, N., Tiedt, L. R., Castillo, P. and Subbotin, S. A. 2016. Morphological and molecular characterisation of one new and several known species of the reniform nematode, Rotylenchulus Linford & Oliveira, 1940 (Hoplolaimidae: Rotylenchulinae), and a phylogeny of the genus. Nematology 18:67–107, doi: 10.1163/15685411-00002945.
- Vrain, T. C. 1993. Restriction fragment length polymorphism separates species of the Xiphinema americanum group. Journal of Nematology 25:361–364, doi: 10.1006/jipa.1993.1100.
- Ye, W., Giblin-Davis, R. M., Braasch, H., Morris, K. and Thomas, W. K. 2007. Phylogenetic relationships among Bursaphelenchus species (Nematoda: Parasitaphelenchidae) inferred from nuclear ribosomal and mitochondrial DNA sequence data. Molecular Phylogenetics and Evolution 43:1185–1197, doi: 10.1016/j.ympev.2007.02.006.
- Zhang, S. and Weng, Z. 1991. Identification of root-knot nematode species in Fujian. Journal of Fujian Agricultural University 20:159–164.