Figure 1:
Summary of the genome assembly of strain NW in comparison to strain SN_
| Strain NW | Strain SN | |
|---|---|---|
| Assembly | ||
| Total bases (bp) | 121,603,260 | 82,627,153 |
| No. of scaffolds | na | 5,839 |
| Scaffold N50 | na | 47,851 |
| No. of contigs | 4,678 | 59,024 |
| Contig N50 | 60,433 | 3,650 |
| No. of gaps (bp) | 0 | 2,769,616 |
| Longest scaffolds (bp) | 1,315,981 | 1,446,875 |
| No. of predicted genes | 32,304 | 36,434 |
| Total no. of amino acids | 12,632,601 | 12,195,137 |
| BUSCO assessment | ||
| Complete BUSCOs | 87.27% | 84.32% |
| Complete single copy | 76.68% | 80.55% |
| Complete duplicated copy | 10.59% | 3.77% |
| Fragmented | 7.33% | 8.15% |
| Missing | 5.40% | 7.54% |
| Alignment | ||
| Aligned Seqs | 4,279 (91.47%) | 5,418 (92.79%) |
| Aligned Bases | 92,999,444 (76.48%) | 74,444,081 (90.10%) |
| 1-to-1 | 49,949 | 49,949 |
| Total length (1-to-1) | 72,468,269 | 72,538,432 |
| Avg. identity (1-to-1) | 97.07 | 97.07 |
| M-to-M | 133,667 | 133,667 |
| Total length (M-to-M) | 106,859,791 | 106,997,101 |
| Avg. identity (M-to-M) | 95.69 | 95.69 |
| Genomic variation | ||
| Breakpoints | 261,902 | 252,282 |
| Relocations | 8,456 | 5,231 |
| Translocations | 13,595 | 16,494 |
| Inversions | 1,411 | 1,952 |
| Insertions | 105,325 | 74,670 |
| Total SNPs | 907,706 | 907,706 |