A Draft Genome Sequence of the Burrowing Nematode Radopholus similis
By:
References
-
Cantarel B. L.
,
Korf I.
,
Robb S. M.
,
Parra G.
,
Ross E.
,
Moore B.
,
Holt C.
,
Alvarado A. S.
and
Yandell M.
. 2008. MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Research 18:188–196.
-
Cotton J. A.
,
Lilley C. J.
,
Jones L. M.
,
Kikuchi T.
,
Reid A. J.
,
Thorpe P.
,
Tsai I. J.
,
Beasley H.
,
Blok V.
and
Cock P. J.
. 2014. The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biology 15:R43.
-
Coyne D. L.
,
Cortada L.
,
Dalzell J. J.
,
Claudius-Cole A. O.
,
Haukeland S.
,
Luambano N.
and
Talwana H.
. 2018. Plant-Parasitic Nematodes and Food Security in Sub-Saharan Africa. Annual Review of Phytopathology 56:381–403.
-
Jacob J.
,
Mitreva M.
,
Vanholme B.
and
Gheysen G.
. 2008. Exploring the transcriptome of the burrowing nematode Radopholus similis. Molecular Genetics and Genomics 280:1–17.
-
Kikuchi T.
,
Cotton J. A.
,
Dalzell J. J.
,
Hasegawa K.
,
Kanzaki N.
,
McVeigh P.
,
Takanashi T.
,
Tsai I. J.
,
Assefa S. A.
and
Cock P. J.
. 2011. Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. PLoS Pathogens 7
(9): e1002219.
-
Opperman C. H.
,
Bird D. M.
,
Williamson V. M.
,
Rokhsar D. S.
,
Burke M.
,
Cohn J.
,
Cromer J.
,
Diener S.
,
Gajan J.
and
Graham S.
. 2008. Sequence and genetic map of Meloidogyne hapla: a compact nematode genome for plant parasitism. Proceedings of the National Academy of Sciences. 105:14802–14807.
-
Parra G.
,
Bradnam K.
and
Korf I.
. 2007. CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23:1061–1067.
-
Simão F. A.
,
Waterhouse R. M.
,
Ioannidis P.
,
Kriventseva E. V.
and
Zdobnov E. M.
. 2015. BUSCO: Assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31: 3210–3212.
-
Somvanshi V. S.
,
Tathode M.
,
Shukla R. N.
. and Rao, U. 2018. Nematode genome announcement: a draft genome for rice root-knot Nematode, Meloidogyne graminicola. Journal of Nematology
50 :111–113. -
Zheng J.
,
Peng D.
,
Chen L.
,
Liu H.
,
Chen F.
,
Xu M.
,
Ju S.
,
Ruan L.
and
Sun M.
. 2016. The Ditylenchus destructor genome provides new insights into the evolution of plant parasitic nematodes. Proceedings of the Royal Society B 283:20160942.
Language: English
Page range: 1 - 2
Published on: Sep 17, 2019
Published by: Society of Nematologists, Inc.
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
Keywords:
Related subjects:
© 2019 Reny Mathew, Mark Burke, Charles H. Opperman, published by Society of Nematologists, Inc.
This work is licensed under the Creative Commons Attribution 4.0 License.