Skip to main content
Have a personal or library account? Click to login
Integrative taxonomy of Xiphinema histriae and Xiphinema lapidosum from Spain Cover

Integrative taxonomy of Xiphinema histriae and Xiphinema lapidosum from Spain

Open Access
|Jul 2019

Figures & Tables

Table 1.

Taxa sampled for Xiphinema species and sequences from NCBI used in this study.

SpeciesSampling codeLocalityHost-plantD2 to D3ITS1CoxI
1. X. histriae QUECAZ a Arroyo Frio, Cazorla, Cazorla, Jaén province, Spain Portuguese oak MK801302 MK801298 MK796911
MK801303
NAVSAP Navas de San Pedro, Cazorla, Jaén province, Spain Black pine MK801304 MK801299 MK796912
MK801305
2. X. lapidosum JAO132 Aroche, Huelva province, Spain Cultivated olive MK801306 MK801300 MK796913
MK801307 MK796914
MK796915
3. X. andalusiense 419bAndujar, Jaén province, SpainWild oliveKX244886––
AR108Villaviciosa, Córdoba province, SpainWild olive––KY816595
4. X. abrantinum CAN223Portugal–AY601625––
5. X. aceri M13Maragheh city, IranWild rose–EU477385–
6. X. adenohystherum –b Bollullos par del Condado, Huelva province, SpainGrapevineGU725075GU725063–
AR086Prado del Rey, Cádiz province, SpainWild olive––KY816590
7. X. baetica H001Hinojos, Huelva province, SpainStone pineKC567169––
LOMASHinojos, Huelva province, SpainStone pine––KY816596
8. X. bakeri CD947Olympic Peninsula, Washington, USAUnknownKF292276––
CD852Point Reyes, Marin county, California, USAUnknown––KF292305
9. X. barense CNR1Brindisi province, ItalyWild oliveKM199691––
its1IASBrindisi province, ItalyWild olive–KM199693–
itsLUCBrindisi province, ItalyWild olive–KM199694–
10. X. basiri EU126San Jose, Cuba–AY601630––
11. X. belmontense MOUBMerza, Coruna, SpainPedunculate oakKC567172––
MOUCHMerza, Pontevedra province, SpainChestnut––KY816598
12. X. brasiliense SZX1305Shenzhen, Guangdong province, ChinaResamKP793050––
13. X. cadavalense ST77Espiel, Córdoba province, SpainCultivated oliveKX244900–KY816599
14. X. castilloi –Gilan province, IranAshKF446655––
15. X. celtiense AR83Penaflor, Sevilla province, SpainWild oliveKX244889KX244926–
AR82Adamuz, Córdoba province, SpainWild olive–KX244927KY816601
16. X. chambersi 1,602Jekyll Island, Georgia, USAOakKU680967––
3,357Jekyll Island, Georgia, USAOak––KU764419
17. X. cohni AR16Sanlucar de Barrameda, Cádiz province, SpainWild oliveKX244901KX244933–
J126-2El Puerto de Santa Maria, Cádiz, SpainStone pine–KC567159–
J0126El Puerto de Santa Maria, Cádiz, SpainGrapevine––KY816602
18. X. conurum ST45Uleila del Campo, Almería province, SpainCultivated oliveKX244902––
ST45VSorbas, Almería province, SpainCultivated olive––KY816603
19. X. costaricense ACC61La Suiza de Turrialba, Cartago province, Costa RicaSugarcaneKX931059––
ACC46Santa Rosa, Limon province, Costa RicaCocoa––KY816605
20. X. coxi GG10Glynn County, Georgia, USA–AY601631––
21. X. coxi europaeum AR92Alcolea, Córdoba province, SpainWild oliveKX244903––
AR020Hinojos, Huelva province, SpainWild olive––KY816606
22. X. cretense OLI40Hersonisos province, GreeceOliveKJ802879KJ802895–
AR039Hersonisos province, GreeceWild olive––KY816608
23. X. dentatum –Silnicna, Czech RepublicHornbeam, Norway mapleEU781538–EU781537
24. X. diversicaudatum KOSKlucovec, SlovakiaUnknownJQ780367––
AUSMarchegg, AustriaUnknown––GU222423
25. X. elongatum CD426Brisbane, AustraliaGrassesMF510431–MF510426
26. X. gersoni H0059Almonte, Huelva province, SpainEucalyptusKC567180–KY816610
27. X. globosum –Alcalá de los Gazules, Cádiz Province, southern SpainUnknownGU549474––
28. X. granatum Xmar1Markazi province, IranPomegranateJQ240273––
29. X. hangzhouense –Hangzhou, Zhejiang province, ChinaBull BayMF538772–MF706262
30. X. herakliense OLE18Agiofarago, Crete Island, GreeceWild oliveKM586349–KY816613
OLE17Agiofarago, Crete Island, GreeceWild olive–KM586355–
OLE16Agiofarago, Crete Island, GreeceWild olive–KM586354–
31. X. hispanum –Andújar, Jaén province, SpainEstepa blancaGU725074GU725061–
00419Andújar, Jaén province, SpainWild olive––KY816614
32. X. hispidum AR004Medina Sidonia, Cádiz province, SpainWild oliveKX244906––
Xhi426Bollullos par del Condado, Huelva province, SpainGrapevine–HM921367–
H026bRociana par del Condado, Huelva province, SpainGrapevine––KY816616
33. X. hunaniense CD2465Thailand–MF510432–MF510427
34. X. ifacolum AE90Kalutara province, Sri LankaGrassesMH012181–MH013396
35. X. index XinTreTrexenta, Cagliari province, ItalyGrapevineHM921406–HM921388
36. X. ingens PsKermanshah province, IranUnknownKJ956388––
37. X. insigne CD1238Fresno County, California, USAGrassesMF510430–MF510425
38. X. iranicum M46Maragheh city, Iranwild rose–EU477386–
39. X. israeliae OLI34Voutes province, GreeceOliveKJ802886––
OLI13Roufas province, GreeceOlive–KJ802896–
AR013Roufas province, GreeceWild olive––KY816618
40. X. italiae AR91Puerto Real, Cádiz province, SpainWild oliveKX244912KX244937–
XIP12Sbiba, Kasserine province, TunisiaCultivated olive–KX062698–
APULBari, Bari province, ItalyGrapevine––KY816623
41. X. iznajarense JAO25Iznajar, Córdoba province, SpainCultivated oliveKX244892KX244928KY816624
KX244929
42. X. japonicum JH-2017JapanArhat pine––KY628214
43. X. krugi CD1827Matapalo, Puntaneras province, Costa RicaRubber PlantKX931063––
ACC13Santa Gertrudis, Alajuela province, Costa RicaSugarcane––KY816626
44. X. lupini H050Hinojos, Huelva, SpainGrapevineKC567183––
388GDBollullos par del Condado, Huelva, SpainGrapevine––KY816630
45. X. macroacanthum individual 70Adriatic Sea coast, ItalyOliveHF546081––
ITALBridisi province, ItalyCultivated olive––KY816631
46. X. macrodora JAO6La Granjuela, Córdoba province, SpainCultivated oliveKU171041––
AR097Santa Mª de Trassierra, Córdoba province, SpainWild olive––KY816632
47. X. meridianum XMP11Sbitla, Kasserine province, TunisiaCultivated oliveKX062679––
11R16Sbitla, Kasserine province, TunisiaCommon buckthorn––KY816635
48. X. mengibarense OC3C4Mengibar, Jaén province, SpainCultivated oliveKX244895––
O3V05Mengibar, Jaén province, SpainCultivated olive––KY816634
49. X. naturale N1Fort Pierce, Florida, USAOakDQ299515––
50. X. nuragicum JAO36Casarabonela, Malaga province, SpainWild oliveKX244913––
RONDARonda, Malaga province, SpainAbete di Spagna–GU725059–
AR113Alcolea, Córdoba province, SpainWild olive––KY816640
51. X. oleae AR35Tarifa, Cádiz province, SpainWild oliveKU171038––
52. X. parachambersi –JapanCape jasmine, SpindleMG786445––
53. X. paradentatum 17-82Tara Mountain, SerbiaMeadowLT883658––
54. X. poasense AJ74San Carlos, Alajuela province, Costa RicaEucalyptus, Cypress and Fountain grassMF461347––
AP99San Carlos, Alajuela province, Costa Rica––MF461335
55. X. pseudocoxi AR95Alcaracejos, Córdoba province, SpainWild oliveKX244915–KY816643
56. X. pyrenaicum PYRDJCahors, Midi-Pyrenees, FranceGrapevineGU725073GU725060–
57. X. radicicola V1273Chu’momray, Viet Nam–AY601622––
58. X. robbinsi TopotypeTypPopGoshayesh village, East Azarbaijan, IranCommon buckthornMH744579––
59. X. robbinsi Tunisia12R28Sbitla, Kasserine province, TunisiaCultivated oliveKX062683–KY816647
60. X. savanicola CAN72Dakar, Senegal–AY601620––
61. X. setariae AC009Pueblo Nuevo de Duacarí, Limón, Costa RicaBananaKX931066–KY816648
62. X. sphaerocephalum AR73Castillo de Locubín, Jaén province, SpainWild oliveKX244917––
AR63Coto Ríos, Jaén province, SpainOak–GU725062–
AR063Coto Ríos, Jaén province, SpainWild olive––KY816649
63. X. tica ACC81Sabanillas, San Jose province, Costa RicaCoffeaeKY623491––
ACC32Lagunilla, Guanacaste province, Costa RicaSoursop––KY623501
64. X. turcicum ST149Prado del Rey, Cádiz province, SpainCultivated oliveKX244919––
ST149San José del Valle, Cádiz province, SpainWild olive––KY816650
65. X. turdetanense J212Sanlucar de Barrameda, Cádiz Province, SpainStone pineKC567186––
AR015Sanlucar de Barrameda, Cádiz Province, SpainWild olive––KY816651
66. X. vuittenezi –Slany, Czech RepublicAppleEF614266–EF614265
–Rhein Valley, Germany––AJ437028–
population ORomaniaGrapevine–HG329722–
67. X. zagrosense YasoojZagros Mountains, IranGrassJN153101––

1 Note: aNewly sequences species in bold font; b(–) data not provided or sequence not used.

Table 2.

Comparative morphometrics of females and males of Xiphinema histriae (Lamberti et al., 1993a, 1993b) from different localities. All measurements are in µm and in the form: mean ± sd (range)a.

Locality/host-plantArroyo Frío, Cazorla Jaén, Spain, Portuguese oakNava de San Pedro, Cazorla Jaén, Spain, pineParatypes, (Lamberti et al., 1993a) Gorizia, Italy, Vitis sp.(Lamberti et al., 1993b) Trieste, Italy, Vitis sp.
Characters/ratiosb FemalesJ2J3J4FemalesMaleFemalesMalesFemalesMale
n205331115341
Lb 4,959.0 ± 253.7 (4,477.0–5,455.0)1,715.0 ± 83.9 (1,583.0–1,795.0)2,629.0 ± 271.4 (2,409.0–2,932.0)4,000.0 ± 300.7 (3,659.0–4,227.0)4,762.4 ± 322.4 (4,364.0–5,364.0)4,773.04.3 ± 0.19 (4.0–4.5)4.2 ± 0.21 (4.0–4.3)4.2 (4.1–4.5)4.5
a77.6 ± 5.4 (68.2–86.4)41.5 ± 4.0 (37.7–46.7)57.4 ± 2.7 (54.8–60.2)68.2 ± 1.4 (67.1–69.7)73.0 ± 3.9 (67.1–79.2)68.267.9 ± 2.2 (64.1–69.4)65.9 ± 0.8 (65.4–66.5)68.4 (61.0–78.1)78.8
b8.7 ± 0.6 (7.4–10.2)4.3 ± 0.4 (3.7–4.7)5.8 ± 0.5 (5.4–6.3)7.1 ± 0.1 (7.1–7.3)8.9 ± 0.8 (8.1–10.6)7.68.3 ± 0.5 (7.7–9.0)8.0 ± 0.4 (7.7–8.3)8.1 (7.3–9.3)9.1
c111.4 ± 8.4 (98.4–130.2)32.6 ± 1.5 (31.0–34.5)45.3 ± 4.4 (40.4–48.9)73.8 ± 3.4 (71.0–77.6)114.1 ± 7.7 (99.7–128.1)116.4103.7 ± 8.5 (96.6–117.8)82.5 ± 4.9 (79.0–86.0)100.0 (86.0–108.2)103.4
c'1.0 ± 0.1 (0.8–1.1)1.8 ± 0.1 (1.7–2.0)1.9 ± 0.2 (1.8–2.1)1.3 ± 0.1 (1.2–1.4)1.0 ± 0.05 (0.9–1.0)0.90.9 ± 0.04 (0.9–1.0)1.0 ± 0.7 (1.0–1.1)1.0 (0.9–1.2)1.0
V or T (%)53.8 ± 1.5 (51.5–57.0)–––53.7 ± 1.5 (52.0–57.5)36.744.5 ± 0.5 (44.0–45.0)–44.0 (42.0–46.0)–
Odontostyle144.1 ± 4.2 (135.5–151.5)81.6 ± 3.8 (77.5–86.5)95.5 ± 3.5 (93.0–99.5)116.7 ± 5.5 (111.0–122.0)142.3 ± 6.6 (132.5–150.5)133.5148.5 ± 4.9 (142.9–156.5)147.3 ± 1.2 (146.5–148.2)151.9 (140.0–156.5)132.3
Odontophore89.4 ± 2.7 (85.0–95.0)59.8 ± 2.0 (56.5–61.5)65.5 ± 2.6 (64.0–68.5)79.0 ± 2.6 (76.0–81.0)85.9 ± 4.5 (80.5–93.0)88.086.7 ± 2.3 (83.5–89.4)89.486.4 (69.4–92.9)74.7
Total stylet233.5 ± 6.4 (223.5–245.0)141.4 ± 4.9 (134.0–146.5)161.0 ± 6.1 (157.0–168.0)195.7 ± 7.8 (187.0–202.0)228.2 ± 8.7 (213.5–241.0)221.5––––
Replacement Odontostyle–100.7 ± 3.1 (95.5–104.0)123.0 ± 0.9 (122.0–123.5)143.0 ± 5.7 (136.5–147.0)––––––
Lip width15.4 ± 0.9 (14.0–17)10.4 ± 0.2 (10.0–10.5)11.8 ± 0.3 (11.5–12.0)13.8 ± 0.4 (13.5–14.0)15.9 ± 0.6 (14.5–16.5)15.515.0 ± 0.3 (14.7–15.3)15.014.013.5
Oa–guiding ring128.0 ± 6.8 (116.0–139.0)75.4 ± 2.4 (71.5–78.0)88.0 ± 8.9 (78.0–95.0)109.7 ± 15.5 (93.5–124.5)117.9 ± 7.4 (108.5–129.5)126.5136.4 ± 6.1 (129.4–144.7)135.0 ± 7.1 (130.0–140.0)137.0 (117.1–145.9)123.5
Tail length45.3 ± 3.1 (40.5–50.0)52.6 ± 1.8 (50.5–54.5)58.2 ± 6.0 (51.5–63.0)54.2 ± 2.5 (51.5–56.5)41.8 ± 2.0 (38.5–44.5)41.041.4 ± 2.3 (38.2–43.5)50.042.6 (38.8–51.2)43.5
J16.0 ± 1.8 (13.0–19.5)16.2 ± 2.9 (12.5–20.5)17.3 ± 2.8 (15.5–20.5)18.0 ± 1.3 (16.5–19.0)17.3 ± 2.8 (13.5–23.5)5.013.4 ± 0.8 (12.9–14.7)14.4 ± 0.4 (14.1–14.7)16.3 (14.1–18.2)9.4
Spicules–––––74.0–84.0 ± 2.1 (82.3–85.2)–82.0
Lateral accessory piece–––––21.0––––
Suppl. 1-anus–––––24.5––––

1 Note: aMeasurements are in µm and in the form: mean  ±  standard deviation (range); ba = body length/maximum body width; b = body length/pharyngeal length; c = body length/tail length; c’ = tail length/body width at anus; V = (distance from anterior end to vulva/body length)×100; T = (distance from cloacal aperture to anterior end of testis/body length)×100; J = hyaline tail region length.

Figure 1.

Light micrographs of Xiphinema histriae (Lamberti et al., 1993a, 1993b). Females: A, Pharynx; B to D, Lip regions; E to G, I, J, Tail region; H, Gonad; K, L, Details of pseudo-Z-organ; Juveniles: M to O, Tail region of 2nd, 3rd and 4th stage juveniles; Males: P, Tail region of male. Abbreviations: a, anus; cb, crystalloid bodies; gr, guiding ring; psZ, pseudo-Z-organ; sp, spicule; spl, supplements; v, vulva. (Scale bars: A = 40 μm; B-D = 15 μm; E–G, I, J = 20 μm; H = 65 μm; K = 10 μm; L = 20 μm; M–O = 10 μm; P = 20 μm.)

Figure 2:

Relationship of body length to length of functional and replacement odontostyle (▴=Odontostyle and •=Replacement odontostyle); length in three developmental stages and mature females of Xiphinema histriae.

Figure 3.

Light micrographs of Xiphinema histriae paratypes (Lamberti et al., 1993a, 1993b). Female: A, Lip region; B, C, Details of pseudo-Z-organ; D, Tail region. Abbreviations: a, anus; cb, crystalloid bodies; psZ, pseudo-Z-organ. (Scale bars: A = 15 μm; B, C = 10 μm; D = 20 μm.)

Table 3.

Morphometrics of Xiphinema lapidosum (Roca and Bravo, 1993) from cultivated olive at Aroche (Huelva, Spain). All measurements are in µm and in the form: mean  ±  s.d. (range)a.

Roca and Bravo (1993) Quinta do Rogelo, Silves, Faro, Portugal/broad-beans and peas
Characters/ratiosFemalesMalesJ2J3J4FemalesMales
n105257147
Lb 4,600 ± 271.5 (4,250–5,023)4,618 ± 415.4 (4,091–4,977)(1,689–1,773)2,292 ± 270.7 (2,068–2,704)3,101 ± 178.9 (2,864–3,318)4,300 ± 344 (3,700–4,600)4,300 ± 310 (3,900–4,800)
a71.5 ± 4.9 (64.9–75.5)70.9 ± 6.7 (63.4–79.6)(57.3–59.1)63.4 ± 3.5 (59.6–68.5)67.0 ± 6.3 (59.3–77.6)80.0 ± 5.3 (70.4–88.2)85.0 ± 6.5 (75.5–95.5)
b9.8 ± 0.6 (8.8–10.9)10.9 ± 1.5 (9.1–12.3)4.56.9 ± 0.9 (6.1–7.8)7.4 ± 0.6 (6.4–8.1)9.5 ± 0.8 (7.8–10.7)9.0 ± 0.85 (7.5–10.0)
c113.2 ± 8.2 (98.8–123.6)118.4 ± 9 (109–129.8)(23.2–24.0)40.5 ± 5.5 (35.3–49.2)67.7 ± 4.3 (62.9–74.5)110.0 ± 12.16 (92.0–132.0)113.2 ± 9.73 (101.5–130.0)
c'0.9 ± 0.07 (0.8–1.0)0.9 ± 0.08 (0.8–1.0)(3.1–3.4)2.2 ± 0.2 (2.0–2.5)1.3 ± 0.1 (1.2–1.5)1.04 ± 0.07 (0.92–1.13)0.99 ± 0.07 (0.92–1.09)
V or T (%)46.0 ± 2.8 (40.6–51.0)50.3 ± 5.6 (45.2–56.3)–––43.4 ± 1.28 (41.0–46.0)–
Odontostyle133.0 ± 2.5 (128.5–136.5)133.3 ± 5.5 (127.0–139.0)(75.5–87.0)94.6 ± 3.8 (90.5–100.0)115.6 ± 2.8 (111.5–120.0)134.5 ± 3.71 (124.5–139.5)136.0 ± 3.88 (130.5–142.5)
Replacement odontostyle––100.0116.1 ± 5.5 (109.5–124.0)136.6 ± 4.7 (129.0–142.0)––
Odontophore82.4 ± 4.6 (72.0–88.5)78.0 ± 3.9 (73.0–83.5)(53.0–55.5)58.2 ± 3.5 (54.0–63.0)70.9 ± 3.1 (66.5–76.0)71.5 ± 1.39 (69.0–73.5)71.5 ± 2.67 (67.5–74.5)
Lip region width14.6 ± 0.5 (14.0–15.5)14.7 ± 0.8 (13.5–15.5)10.011.5 ± 0.6 (10.5–12.0)12.6 ± 1.3 (10.5–14.0)15.0 ± 0.60 (14.0–16.0)15.0 ± 0.31 (14.5–15.5)
Oral aperture-guiding ring122.5 ± 6.9 (111.5–135.0)117.9 ± 3.0 (113.0–120.5)(65.0–73.0)81.5 ± 4.2 (76.5–86.0)98.2 ± 7.3 (84.0–106.0)116.5 ± 7.03 (97.5–127.5)121.5 ± 5.94 (115.5–130.5)
Tail length40.8 ± 2.8 (36.5–44.0)39.0 ± 2.0 (36.5–42.0)(70.5–76.5)57.0 ± 3.5 (51.5–59.5)46.5 ± 3.1 (43.0–52.0)39.0 ± 2.04 (34.0–41.0)38.5 ± 2.77 (35.4–43.0)
Hyaline tail11.2 ± 1.5 (9.5–14.0)9.3 ± 1.4 (7.5–10.5)14.513.7 ± 3.4 (9.0–18.5)13.3 ± 0.8 (12.0–14.0)11.5 ± 1.8 (9.0–15.5)11.0 ± 1.59 (8.5–13.0)
Spicules–66.2 ± 3.1 (63.0–71.0)––––64.5 ± 3.02 (60.0–68.0)
Lateral accessory piece–18.0 ± 1.5 (16.5–19.5)––––15.5 ± 1.55 (13.5–18.0)

1 Note: aMeasurements are in µm and in the form: mean ± standard deviation (range); ba = body length/maximum body width; b = body length/pharyngeal length; c = body length/tail length; c’ = tail length/body width at anus; V = (distance from anterior end to vulva/body length)×100; T = (distance from cloacal aperture to anterior end of testis/body length)×100; J = hyaline tail region length.

Figure 4:

Light micrographs of Xiphinema lapidosum (Roca and Bravo, 1993). Females: A, Pharynx; B to C, Lip regions; D, Gonad; E, F, Details of pseudo-Z-organ; G, H, Tail regions; Males: I, Tail region of male; Juveniles: J to L, Tail region of 2nd, 3rd and 4th stage juveniles. Abbreviations: a, anus; gr, guiding ring; psZ, pseudo-Z-organ; sb, sclerotized bodies; sp, spicule; spl, supplements; v, vulva. (Scale bars: A = 40 μm; B, C  = 15 μm; D = 65 μm; E–I = 20 μm; J–L = 10 μm.)

Figure 5:

Relationship of body length to length of functional and replacement odontostyle (▴= Odontostyle and •=  Replacement odontostyle); length in three developmental stages and mature females of Xiphinema lapidosum.

Figure 6:

Light micrographs of Xiphinema lapidosum paratypes (Roca and Bravo, 1993). Female: A, Pharynx; B, Lip region; C, D, Details of pseudo-Z-organ; E, F, Tail regions; Males: G, Tail region of male. Abbreviations: a, anus; gr, guiding ring; psZ, pseudo-Z-organ; sp, spicule; spl, supplements. (Scale bars: A = 40 μm; B = 15 μm; C-G = 20 μm.)

Figure 7:

Phylogenetic relationships within the Xiphinema non-americanum group complex. Bayesian 50% majority rule consensus tree as inferred from D2 to D3 expansion segments of 28S rRNA sequence alignment under the general time-reversible model of sequence evolution with correction for invariable sites and a gamma-shaped distribution (GTR + I + G) (lnL = 11,543.7822; AIC = 23,383.5644; freq A = 0.2502; freq C = 0.2298; freq G = 0.2995; freq T = 0.2205; R(a) = 0.9908; R(b) = 2.7656; R(c) = 2.4778; R(d) = 0.4894; R(e) = 4.2554; R(f) = 1.0000). Posterior probabilities greater than 0.70 are given for appropriate clades. Newly obtained sequences in this study are shown in bold. Scale bar = expected changes per site.

Figure 8:

Phylogenetic relationships within the Xiphinema non-americanum group complex. Bayesian 50% majority rule consensus tree as inferred from ITS1 rRNA gene sequence alignment under the general time-reversible model of sequence evolution with correction for invariable sites and a gamma-shaped distribution (GTR + I + G) (lnL = 6,024.1284; AIC = 12,068.2568; freq A = 0.2316; freq C = 0.2224; freq G = 0.3009; freq T = 0.2451; R(a) = 0.7019; R(b) = 4.6043; R(c) = 2.0272; R(d) = 0.6248; R(e) = 7.4428; R(f) = 1.0000). Posterior probabilities greater than 0.70 are given for appropriate clades. Newly obtained sequences in this study are shown in bold. Scale bar = expected changes per site.

Figure 9:

Phylogenetic relationships within the Xiphinema non-americanum group complex. Bayesian 50% majority rule consensus tree as inferred from partial cytochrome c oxidase subunit I (CoxI) gene sequence alignment under the general time-reversible model of sequence evolution with correction for invariable sites and a gamma-shaped distribution (GTR + I + G), (lnL = 8,561.5874; AIC = 17,347.1747; freq A = 0.3687; freq C = 0.1301; freq G = 0.1382; freq T = 0.3630; R(a) = 3.3231; R(b) = 22.8405; R(c) = 2.0144; R(d) = 10.5400; R(e) = 75.4228; R(f) = 1.0000). Posterior probabilities greater than 0.70 are given for appropriate clades. Newly obtained sequences in this study are shown in bold. Scale bar = expected changes per site.

DOI: https://doi.org/10.21307/jofnem-2019-037 | Journal eISSN: 2640-396X | Journal ISSN: 0022-300X
Language: English
Page range: 1 - 21
Submitted on: Apr 23, 2019
Published online: Jul 29, 2019
Published in print: Jan 1, 2019
Published by: Society of Nematologists, Inc.
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2019 Ruihang Cai, Antonio Archidona-Yuste, Carolina Cantalapiedra-Navarrete, Juan E. Palomares-Rius, Jingwu Zheng, Pablo Castillo, published by Society of Nematologists, Inc.
This work is licensed under the Creative Commons Attribution 4.0 License.