Skip to main content
Have a personal or library account? Click to login
Integrative taxonomy of Xiphinema histriae and Xiphinema lapidosum from Spain Cover

Integrative taxonomy of Xiphinema histriae and Xiphinema lapidosum from Spain

Open Access
|Jul 2019

Figures & Tables

Table 1.

Taxa sampled for Xiphinema species and sequences from NCBI used in this study.

SpeciesSampling codeLocalityHost-plantD2 to D3ITS1CoxI
1. X. histriae QUECAZ a Arroyo Frio, Cazorla, Cazorla, Jaén province, Spain Portuguese oak MK801302 MK801298 MK796911
MK801303
NAVSAP Navas de San Pedro, Cazorla, Jaén province, Spain Black pine MK801304 MK801299 MK796912
MK801305
2. X. lapidosum JAO132 Aroche, Huelva province, Spain Cultivated olive MK801306 MK801300 MK796913
MK801307 MK796914
MK796915
3. X. andalusiense 419bAndujar, Jaén province, SpainWild oliveKX244886
AR108Villaviciosa, Córdoba province, SpainWild oliveKY816595
4. X. abrantinum CAN223PortugalAY601625
5. X. aceri M13Maragheh city, IranWild roseEU477385
6. X. adenohystherum b Bollullos par del Condado, Huelva province, SpainGrapevineGU725075GU725063
AR086Prado del Rey, Cádiz province, SpainWild oliveKY816590
7. X. baetica H001Hinojos, Huelva province, SpainStone pineKC567169
LOMASHinojos, Huelva province, SpainStone pineKY816596
8. X. bakeri CD947Olympic Peninsula, Washington, USAUnknownKF292276
CD852Point Reyes, Marin county, California, USAUnknownKF292305
9. X. barense CNR1Brindisi province, ItalyWild oliveKM199691
its1IASBrindisi province, ItalyWild oliveKM199693
itsLUCBrindisi province, ItalyWild oliveKM199694
10. X. basiri EU126San Jose, CubaAY601630
11. X. belmontense MOUBMerza, Coruna, SpainPedunculate oakKC567172
MOUCHMerza, Pontevedra province, SpainChestnutKY816598
12. X. brasiliense SZX1305Shenzhen, Guangdong province, ChinaResamKP793050
13. X. cadavalense ST77Espiel, Córdoba province, SpainCultivated oliveKX244900KY816599
14. X. castilloi Gilan province, IranAshKF446655
15. X. celtiense AR83Penaflor, Sevilla province, SpainWild oliveKX244889KX244926
AR82Adamuz, Córdoba province, SpainWild oliveKX244927KY816601
16. X. chambersi 1,602Jekyll Island, Georgia, USAOakKU680967
3,357Jekyll Island, Georgia, USAOakKU764419
17. X. cohni AR16Sanlucar de Barrameda, Cádiz province, SpainWild oliveKX244901KX244933
J126-2El Puerto de Santa Maria, Cádiz, SpainStone pineKC567159
J0126El Puerto de Santa Maria, Cádiz, SpainGrapevineKY816602
18. X. conurum ST45Uleila del Campo, Almería province, SpainCultivated oliveKX244902
ST45VSorbas, Almería province, SpainCultivated oliveKY816603
19. X. costaricense ACC61La Suiza de Turrialba, Cartago province, Costa RicaSugarcaneKX931059
ACC46Santa Rosa, Limon province, Costa RicaCocoaKY816605
20. X. coxi GG10Glynn County, Georgia, USAAY601631
21. X. coxi europaeum AR92Alcolea, Córdoba province, SpainWild oliveKX244903
AR020Hinojos, Huelva province, SpainWild oliveKY816606
22. X. cretense OLI40Hersonisos province, GreeceOliveKJ802879KJ802895
AR039Hersonisos province, GreeceWild oliveKY816608
23. X. dentatum Silnicna, Czech RepublicHornbeam, Norway mapleEU781538EU781537
24. X. diversicaudatum KOSKlucovec, SlovakiaUnknownJQ780367
AUSMarchegg, AustriaUnknownGU222423
25. X. elongatum CD426Brisbane, AustraliaGrassesMF510431MF510426
26. X. gersoni H0059Almonte, Huelva province, SpainEucalyptusKC567180KY816610
27. X. globosum Alcalá de los Gazules, Cádiz Province, southern SpainUnknownGU549474
28. X. granatum Xmar1Markazi province, IranPomegranateJQ240273
29. X. hangzhouense Hangzhou, Zhejiang province, ChinaBull BayMF538772MF706262
30. X. herakliense OLE18Agiofarago, Crete Island, GreeceWild oliveKM586349KY816613
OLE17Agiofarago, Crete Island, GreeceWild oliveKM586355
OLE16Agiofarago, Crete Island, GreeceWild oliveKM586354
31. X. hispanum Andújar, Jaén province, SpainEstepa blancaGU725074GU725061
00419Andújar, Jaén province, SpainWild oliveKY816614
32. X. hispidum AR004Medina Sidonia, Cádiz province, SpainWild oliveKX244906
Xhi426Bollullos par del Condado, Huelva province, SpainGrapevineHM921367
H026bRociana par del Condado, Huelva province, SpainGrapevineKY816616
33. X. hunaniense CD2465ThailandMF510432MF510427
34. X. ifacolum AE90Kalutara province, Sri LankaGrassesMH012181MH013396
35. X. index XinTreTrexenta, Cagliari province, ItalyGrapevineHM921406HM921388
36. X. ingens PsKermanshah province, IranUnknownKJ956388
37. X. insigne CD1238Fresno County, California, USAGrassesMF510430MF510425
38. X. iranicum M46Maragheh city, Iranwild roseEU477386
39. X. israeliae OLI34Voutes province, GreeceOliveKJ802886
OLI13Roufas province, GreeceOliveKJ802896
AR013Roufas province, GreeceWild oliveKY816618
40. X. italiae AR91Puerto Real, Cádiz province, SpainWild oliveKX244912KX244937
XIP12Sbiba, Kasserine province, TunisiaCultivated oliveKX062698
APULBari, Bari province, ItalyGrapevineKY816623
41. X. iznajarense JAO25Iznajar, Córdoba province, SpainCultivated oliveKX244892KX244928KY816624
KX244929
42. X. japonicum JH-2017JapanArhat pineKY628214
43. X. krugi CD1827Matapalo, Puntaneras province, Costa RicaRubber PlantKX931063
ACC13Santa Gertrudis, Alajuela province, Costa RicaSugarcaneKY816626
44. X. lupini H050Hinojos, Huelva, SpainGrapevineKC567183
388GDBollullos par del Condado, Huelva, SpainGrapevineKY816630
45. X. macroacanthum individual 70Adriatic Sea coast, ItalyOliveHF546081
ITALBridisi province, ItalyCultivated oliveKY816631
46. X. macrodora JAO6La Granjuela, Córdoba province, SpainCultivated oliveKU171041
AR097Santa Mª de Trassierra, Córdoba province, SpainWild oliveKY816632
47. X. meridianum XMP11Sbitla, Kasserine province, TunisiaCultivated oliveKX062679
11R16Sbitla, Kasserine province, TunisiaCommon buckthornKY816635
48. X. mengibarense OC3C4Mengibar, Jaén province, SpainCultivated oliveKX244895
O3V05Mengibar, Jaén province, SpainCultivated oliveKY816634
49. X. naturale N1Fort Pierce, Florida, USAOakDQ299515
50. X. nuragicum JAO36Casarabonela, Malaga province, SpainWild oliveKX244913
RONDARonda, Malaga province, SpainAbete di SpagnaGU725059
AR113Alcolea, Córdoba province, SpainWild oliveKY816640
51. X. oleae AR35Tarifa, Cádiz province, SpainWild oliveKU171038
52. X. parachambersi JapanCape jasmine, SpindleMG786445
53. X. paradentatum 17-82Tara Mountain, SerbiaMeadowLT883658
54. X. poasense AJ74San Carlos, Alajuela province, Costa RicaEucalyptus, Cypress and Fountain grassMF461347
AP99San Carlos, Alajuela province, Costa RicaMF461335
55. X. pseudocoxi AR95Alcaracejos, Córdoba province, SpainWild oliveKX244915KY816643
56. X. pyrenaicum PYRDJCahors, Midi-Pyrenees, FranceGrapevineGU725073GU725060
57. X. radicicola V1273Chu’momray, Viet NamAY601622
58. X. robbinsi TopotypeTypPopGoshayesh village, East Azarbaijan, IranCommon buckthornMH744579
59. X. robbinsi Tunisia12R28Sbitla, Kasserine province, TunisiaCultivated oliveKX062683KY816647
60. X. savanicola CAN72Dakar, SenegalAY601620
61. X. setariae AC009Pueblo Nuevo de Duacarí, Limón, Costa RicaBananaKX931066KY816648
62. X. sphaerocephalum AR73Castillo de Locubín, Jaén province, SpainWild oliveKX244917
AR63Coto Ríos, Jaén province, SpainOakGU725062
AR063Coto Ríos, Jaén province, SpainWild oliveKY816649
63. X. tica ACC81Sabanillas, San Jose province, Costa RicaCoffeaeKY623491
ACC32Lagunilla, Guanacaste province, Costa RicaSoursopKY623501
64. X. turcicum ST149Prado del Rey, Cádiz province, SpainCultivated oliveKX244919
ST149San José del Valle, Cádiz province, SpainWild oliveKY816650
65. X. turdetanense J212Sanlucar de Barrameda, Cádiz Province, SpainStone pineKC567186
AR015Sanlucar de Barrameda, Cádiz Province, SpainWild oliveKY816651
66. X. vuittenezi Slany, Czech RepublicAppleEF614266EF614265
Rhein Valley, GermanyAJ437028
population ORomaniaGrapevineHG329722
67. X. zagrosense YasoojZagros Mountains, IranGrassJN153101

1 Note: aNewly sequences species in bold font; b(–) data not provided or sequence not used.

Table 2.

Comparative morphometrics of females and males of Xiphinema histriae (Lamberti et al., 1993a, 1993b) from different localities. All measurements are in µm and in the form: mean ± sd (range)a.

Locality/host-plantArroyo Frío, Cazorla Jaén, Spain, Portuguese oakNava de San Pedro, Cazorla Jaén, Spain, pineParatypes, (Lamberti et al., 1993a) Gorizia, Italy, Vitis sp.(Lamberti et al., 1993b) Trieste, Italy, Vitis sp.
Characters/ratiosb FemalesJ2J3J4FemalesMaleFemalesMalesFemalesMale
n205331115341
Lb 4,959.0 ± 253.7 (4,477.0–5,455.0)1,715.0 ± 83.9 (1,583.0–1,795.0)2,629.0 ± 271.4 (2,409.0–2,932.0)4,000.0 ± 300.7 (3,659.0–4,227.0)4,762.4 ± 322.4 (4,364.0–5,364.0)4,773.04.3 ± 0.19 (4.0–4.5)4.2 ± 0.21 (4.0–4.3)4.2 (4.1–4.5)4.5
a77.6 ± 5.4 (68.2–86.4)41.5 ± 4.0 (37.7–46.7)57.4 ± 2.7 (54.8–60.2)68.2 ± 1.4 (67.1–69.7)73.0 ± 3.9 (67.1–79.2)68.267.9 ± 2.2 (64.1–69.4)65.9 ± 0.8 (65.4–66.5)68.4 (61.0–78.1)78.8
b8.7 ± 0.6 (7.4–10.2)4.3 ± 0.4 (3.7–4.7)5.8 ± 0.5 (5.4–6.3)7.1 ± 0.1 (7.1–7.3)8.9 ± 0.8 (8.1–10.6)7.68.3 ± 0.5 (7.7–9.0)8.0 ± 0.4 (7.7–8.3)8.1 (7.3–9.3)9.1
c111.4 ± 8.4 (98.4–130.2)32.6 ± 1.5 (31.0–34.5)45.3 ± 4.4 (40.4–48.9)73.8 ± 3.4 (71.0–77.6)114.1 ± 7.7 (99.7–128.1)116.4103.7 ± 8.5 (96.6–117.8)82.5 ± 4.9 (79.0–86.0)100.0 (86.0–108.2)103.4
c'1.0 ± 0.1 (0.8–1.1)1.8 ± 0.1 (1.7–2.0)1.9 ± 0.2 (1.8–2.1)1.3 ± 0.1 (1.2–1.4)1.0 ± 0.05 (0.9–1.0)0.90.9 ± 0.04 (0.9–1.0)1.0 ± 0.7 (1.0–1.1)1.0 (0.9–1.2)1.0
V or T (%)53.8 ± 1.5 (51.5–57.0)53.7 ± 1.5 (52.0–57.5)36.744.5 ± 0.5 (44.0–45.0)44.0 (42.0–46.0)
Odontostyle144.1 ± 4.2 (135.5–151.5)81.6 ± 3.8 (77.5–86.5)95.5 ± 3.5 (93.0–99.5)116.7 ± 5.5 (111.0–122.0)142.3 ± 6.6 (132.5–150.5)133.5148.5 ± 4.9 (142.9–156.5)147.3 ± 1.2 (146.5–148.2)151.9 (140.0–156.5)132.3
Odontophore89.4 ± 2.7 (85.0–95.0)59.8 ± 2.0 (56.5–61.5)65.5 ± 2.6 (64.0–68.5)79.0 ± 2.6 (76.0–81.0)85.9 ± 4.5 (80.5–93.0)88.086.7 ± 2.3 (83.5–89.4)89.486.4 (69.4–92.9)74.7
Total stylet233.5 ± 6.4 (223.5–245.0)141.4 ± 4.9 (134.0–146.5)161.0 ± 6.1 (157.0–168.0)195.7 ± 7.8 (187.0–202.0)228.2 ± 8.7 (213.5–241.0)221.5
Replacement Odontostyle100.7 ± 3.1 (95.5–104.0)123.0 ± 0.9 (122.0–123.5)143.0 ± 5.7 (136.5–147.0)
Lip width15.4 ± 0.9 (14.0–17)10.4 ± 0.2 (10.0–10.5)11.8 ± 0.3 (11.5–12.0)13.8 ± 0.4 (13.5–14.0)15.9 ± 0.6 (14.5–16.5)15.515.0 ± 0.3 (14.7–15.3)15.014.013.5
Oa–guiding ring128.0 ± 6.8 (116.0–139.0)75.4 ± 2.4 (71.5–78.0)88.0 ± 8.9 (78.0–95.0)109.7 ± 15.5 (93.5–124.5)117.9 ± 7.4 (108.5–129.5)126.5136.4 ± 6.1 (129.4–144.7)135.0 ± 7.1 (130.0–140.0)137.0 (117.1–145.9)123.5
Tail length45.3 ± 3.1 (40.5–50.0)52.6 ± 1.8 (50.5–54.5)58.2 ± 6.0 (51.5–63.0)54.2 ± 2.5 (51.5–56.5)41.8 ± 2.0 (38.5–44.5)41.041.4 ± 2.3 (38.2–43.5)50.042.6 (38.8–51.2)43.5
J16.0 ± 1.8 (13.0–19.5)16.2 ± 2.9 (12.5–20.5)17.3 ± 2.8 (15.5–20.5)18.0 ± 1.3 (16.5–19.0)17.3 ± 2.8 (13.5–23.5)5.013.4 ± 0.8 (12.9–14.7)14.4 ± 0.4 (14.1–14.7)16.3 (14.1–18.2)9.4
Spicules74.084.0 ± 2.1 (82.3–85.2)82.0
Lateral accessory piece21.0
Suppl. 1-anus24.5

1 Note: aMeasurements are in µm and in the form: mean  ±  standard deviation (range); ba = body length/maximum body width; b = body length/pharyngeal length; c = body length/tail length; c’ = tail length/body width at anus; V = (distance from anterior end to vulva/body length)×100; T = (distance from cloacal aperture to anterior end of testis/body length)×100; J = hyaline tail region length.

Figure 1.

Light micrographs of Xiphinema histriae (Lamberti et al., 1993a, 1993b). Females: A, Pharynx; B to D, Lip regions; E to G, I, J, Tail region; H, Gonad; K, L, Details of pseudo-Z-organ; Juveniles: M to O, Tail region of 2nd, 3rd and 4th stage juveniles; Males: P, Tail region of male. Abbreviations: a, anus; cb, crystalloid bodies; gr, guiding ring; psZ, pseudo-Z-organ; sp, spicule; spl, supplements; v, vulva. (Scale bars: A = 40 μm; B-D = 15 μm; E–G, I, J = 20 μm; H = 65 μm; K = 10 μm; L = 20 μm; M–O = 10 μm; P = 20 μm.)

Figure 2:

Relationship of body length to length of functional and replacement odontostyle (▴=Odontostyle and •=Replacement odontostyle); length in three developmental stages and mature females of Xiphinema histriae.

Figure 3.

Light micrographs of Xiphinema histriae paratypes (Lamberti et al., 1993a, 1993b). Female: A, Lip region; B, C, Details of pseudo-Z-organ; D, Tail region. Abbreviations: a, anus; cb, crystalloid bodies; psZ, pseudo-Z-organ. (Scale bars: A = 15 μm; B, C = 10 μm; D = 20 μm.)

Table 3.

Morphometrics of Xiphinema lapidosum (Roca and Bravo, 1993) from cultivated olive at Aroche (Huelva, Spain). All measurements are in µm and in the form: mean  ±  s.d. (range)a.

Roca and Bravo (1993) Quinta do Rogelo, Silves, Faro, Portugal/broad-beans and peas
Characters/ratiosFemalesMalesJ2J3J4FemalesMales
n105257147
Lb 4,600 ± 271.5 (4,250–5,023)4,618 ± 415.4 (4,091–4,977)(1,689–1,773)2,292 ± 270.7 (2,068–2,704)3,101 ± 178.9 (2,864–3,318)4,300 ± 344 (3,700–4,600)4,300 ± 310 (3,900–4,800)
a71.5 ± 4.9 (64.9–75.5)70.9 ± 6.7 (63.4–79.6)(57.3–59.1)63.4 ± 3.5 (59.6–68.5)67.0 ± 6.3 (59.3–77.6)80.0 ± 5.3 (70.4–88.2)85.0 ± 6.5 (75.5–95.5)
b9.8 ± 0.6 (8.8–10.9)10.9 ± 1.5 (9.1–12.3)4.56.9 ± 0.9 (6.1–7.8)7.4 ± 0.6 (6.4–8.1)9.5 ± 0.8 (7.8–10.7)9.0 ± 0.85 (7.5–10.0)
c113.2 ± 8.2 (98.8–123.6)118.4 ± 9 (109–129.8)(23.2–24.0)40.5 ± 5.5 (35.3–49.2)67.7 ± 4.3 (62.9–74.5)110.0 ± 12.16 (92.0–132.0)113.2 ± 9.73 (101.5–130.0)
c'0.9 ± 0.07 (0.8–1.0)0.9 ± 0.08 (0.8–1.0)(3.1–3.4)2.2 ± 0.2 (2.0–2.5)1.3 ± 0.1 (1.2–1.5)1.04 ± 0.07 (0.92–1.13)0.99 ± 0.07 (0.92–1.09)
V or T (%)46.0 ± 2.8 (40.6–51.0)50.3 ± 5.6 (45.2–56.3)43.4 ± 1.28 (41.0–46.0)
Odontostyle133.0 ± 2.5 (128.5–136.5)133.3 ± 5.5 (127.0–139.0)(75.5–87.0)94.6 ± 3.8 (90.5–100.0)115.6 ± 2.8 (111.5–120.0)134.5 ± 3.71 (124.5–139.5)136.0 ± 3.88 (130.5–142.5)
Replacement odontostyle100.0116.1 ± 5.5 (109.5–124.0)136.6 ± 4.7 (129.0–142.0)
Odontophore82.4 ± 4.6 (72.0–88.5)78.0 ± 3.9 (73.0–83.5)(53.0–55.5)58.2 ± 3.5 (54.0–63.0)70.9 ± 3.1 (66.5–76.0)71.5 ± 1.39 (69.0–73.5)71.5 ± 2.67 (67.5–74.5)
Lip region width14.6 ± 0.5 (14.0–15.5)14.7 ± 0.8 (13.5–15.5)10.011.5 ± 0.6 (10.5–12.0)12.6 ± 1.3 (10.5–14.0)15.0 ± 0.60 (14.0–16.0)15.0 ± 0.31 (14.5–15.5)
Oral aperture-guiding ring122.5 ± 6.9 (111.5–135.0)117.9 ± 3.0 (113.0–120.5)(65.0–73.0)81.5 ± 4.2 (76.5–86.0)98.2 ± 7.3 (84.0–106.0)116.5 ± 7.03 (97.5–127.5)121.5 ± 5.94 (115.5–130.5)
Tail length40.8 ± 2.8 (36.5–44.0)39.0 ± 2.0 (36.5–42.0)(70.5–76.5)57.0 ± 3.5 (51.5–59.5)46.5 ± 3.1 (43.0–52.0)39.0 ± 2.04 (34.0–41.0)38.5 ± 2.77 (35.4–43.0)
Hyaline tail11.2 ± 1.5 (9.5–14.0)9.3 ± 1.4 (7.5–10.5)14.513.7 ± 3.4 (9.0–18.5)13.3 ± 0.8 (12.0–14.0)11.5 ± 1.8 (9.0–15.5)11.0 ± 1.59 (8.5–13.0)
Spicules66.2 ± 3.1 (63.0–71.0)64.5 ± 3.02 (60.0–68.0)
Lateral accessory piece18.0 ± 1.5 (16.5–19.5)15.5 ± 1.55 (13.5–18.0)

1 Note: aMeasurements are in µm and in the form: mean ± standard deviation (range); ba = body length/maximum body width; b = body length/pharyngeal length; c = body length/tail length; c’ = tail length/body width at anus; V = (distance from anterior end to vulva/body length)×100; T = (distance from cloacal aperture to anterior end of testis/body length)×100; J = hyaline tail region length.

Figure 4:

Light micrographs of Xiphinema lapidosum (Roca and Bravo, 1993). Females: A, Pharynx; B to C, Lip regions; D, Gonad; E, F, Details of pseudo-Z-organ; G, H, Tail regions; Males: I, Tail region of male; Juveniles: J to L, Tail region of 2nd, 3rd and 4th stage juveniles. Abbreviations: a, anus; gr, guiding ring; psZ, pseudo-Z-organ; sb, sclerotized bodies; sp, spicule; spl, supplements; v, vulva. (Scale bars: A = 40 μm; B, C  = 15 μm; D = 65 μm; E–I = 20 μm; J–L = 10 μm.)

Figure 5:

Relationship of body length to length of functional and replacement odontostyle (▴= Odontostyle and •=  Replacement odontostyle); length in three developmental stages and mature females of Xiphinema lapidosum.

Figure 6:

Light micrographs of Xiphinema lapidosum paratypes (Roca and Bravo, 1993). Female: A, Pharynx; B, Lip region; C, D, Details of pseudo-Z-organ; E, F, Tail regions; Males: G, Tail region of male. Abbreviations: a, anus; gr, guiding ring; psZ, pseudo-Z-organ; sp, spicule; spl, supplements. (Scale bars: A = 40 μm; B = 15 μm; C-G = 20 μm.)

Figure 7:

Phylogenetic relationships within the Xiphinema non-americanum group complex. Bayesian 50% majority rule consensus tree as inferred from D2 to D3 expansion segments of 28S rRNA sequence alignment under the general time-reversible model of sequence evolution with correction for invariable sites and a gamma-shaped distribution (GTR + I + G) (lnL = 11,543.7822; AIC = 23,383.5644; freq A = 0.2502; freq C = 0.2298; freq G = 0.2995; freq T = 0.2205; R(a) = 0.9908; R(b) = 2.7656; R(c) = 2.4778; R(d) = 0.4894; R(e) = 4.2554; R(f) = 1.0000). Posterior probabilities greater than 0.70 are given for appropriate clades. Newly obtained sequences in this study are shown in bold. Scale bar = expected changes per site.

Figure 8:

Phylogenetic relationships within the Xiphinema non-americanum group complex. Bayesian 50% majority rule consensus tree as inferred from ITS1 rRNA gene sequence alignment under the general time-reversible model of sequence evolution with correction for invariable sites and a gamma-shaped distribution (GTR + I + G) (lnL = 6,024.1284; AIC = 12,068.2568; freq A = 0.2316; freq C = 0.2224; freq G = 0.3009; freq T = 0.2451; R(a) = 0.7019; R(b) = 4.6043; R(c) = 2.0272; R(d) = 0.6248; R(e) = 7.4428; R(f) = 1.0000). Posterior probabilities greater than 0.70 are given for appropriate clades. Newly obtained sequences in this study are shown in bold. Scale bar = expected changes per site.

Figure 9:

Phylogenetic relationships within the Xiphinema non-americanum group complex. Bayesian 50% majority rule consensus tree as inferred from partial cytochrome c oxidase subunit I (CoxI) gene sequence alignment under the general time-reversible model of sequence evolution with correction for invariable sites and a gamma-shaped distribution (GTR + I + G), (lnL = 8,561.5874; AIC = 17,347.1747; freq A = 0.3687; freq C = 0.1301; freq G = 0.1382; freq T = 0.3630; R(a) = 3.3231; R(b) = 22.8405; R(c) = 2.0144; R(d) = 10.5400; R(e) = 75.4228; R(f) = 1.0000). Posterior probabilities greater than 0.70 are given for appropriate clades. Newly obtained sequences in this study are shown in bold. Scale bar = expected changes per site.

DOI: https://doi.org/10.21307/jofnem-2019-037 | Journal eISSN: 2640-396X | Journal ISSN: 0022-300X
Language: English
Page range: 1 - 21
Submitted on: Apr 23, 2019
Published on: Jul 29, 2019
Published by: Society of Nematologists, Inc.
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2019 Ruihang Cai, Antonio Archidona-Yuste, Carolina Cantalapiedra-Navarrete, Juan E. Palomares-Rius, Jingwu Zheng, Pablo Castillo, published by Society of Nematologists, Inc.
This work is licensed under the Creative Commons Attribution 4.0 License.