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Introduction to Nematode Genome and Transcriptome Announcements in the Journal of Nematology Cover

Introduction to Nematode Genome and Transcriptome Announcements in the Journal of Nematology

Open Access
|Jul 2017

References

  1. Abad, P., Gouzy, J., Aury, J. M., Castagnone-Sereno, P., Danchin, E. G., Deleury, E., Perfus-Barbeoch, L., Anthouard, V., Artiguenave, F., Blok, V. C., Caillaud, M. C., Coutinho, P. M., Dasilva, C., De Luca, F., Deau, F., Esquibet, M., Flutre, T., Goldstone, J. V., Hamamouch, N., Hewezi, T., Jaillon, O., Jubin, C., Leonetti, P., Magliano, M., Maier, T. R., Markov, G. V., McVeigh, P., Pesole, G., Poulain, J., Robinson-Rechavi, M., Sallet, E., S’egurens, B., Steinbach, D., Tytgat, T., Ugarte, E., van Ghelder, C., Veronico, P., Baum, T. J., Blaxter, M., Bleve-Zacheo, T., Davis, E. L., Ewbank, J. J., Favery, B., Grenier, E., Henrissat, B., Jones, J. T., Laudet, V., Maule, A. G., Quesneville, H., Rosso, M. N., Schiex, T., Smant, G., Weissenbach, J., and Wincker, P. 2008. Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology 26:909–915.10.1038/nbt.148218660804
  2. Bai, X., Adams, B. J., Ciche, T. A., Clifton, S., Gaugler, R., Kim, K., Spieth, J., Sternberg, P. W., Wilson, R. K., and Grewal, P. S. 2013. A lover and a fighter: The genome sequence of an entomopathogenic nematode Heterorhabditis bacteriophora. PLoS One 8:e69618.10.1371/journal.pone.0069618371549423874975
  3. C. elegans Sequencing Consortium. 1998. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282:2012–2018.
  4. Cotton, J. A., Lilley, C. J., Jones, L. M., Kikuchi, T., Reid, A. J., Thorpe, P., Tsai, I. J., Beasley, H., Blok, V., Cock, P. J. A., Eves-van den Akker, S., Holroyd, N., Hunt, M., Mantelin, S., Naghra, H., Pain, A., Palomeres-Rius, J. E., Zarowiecki, M., Berriman, M., Jones, J. T., and Urwin, P. E. 2014. The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biology 15:R43.10.1186/gb-2014-15-3-r43405485724580726
  5. Dieterich, C., Clifton, S. W., Schuster, L. N., Chinwalla, A., Delehaunty, K., Dinkelacker, I., Fulton, L., Fulton, R., Godfrey, J., Minx, P., Mitreva, M., Roeseler, W., Tian, H., Witte, H., Yang, S. P., Wilson, R. K., and Sommer, R. J. 2008. The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism. Nature Genetics 40:1193–1198.10.1038/ng.227381684418806794
  6. Dillman, A. R., Macchietto, M., Porter, C. F., Rogers, A., Williams, B., Antonshechkin, I., Lee, M.-M., Goodwin, Z., Lu, X., Lewis, E. E., Goodrich-Blair, H., Stock, P., Adams, B., Sternberg, P. W., and Mortazavi, A. 2015. Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks. Genome Biology 16:200.10.1186/s13059-015-0746-6457876226392177
  7. Ghedin, E., Wang, S., Spiro, D., Caler, E., Zhao, Q., Crabtree, J., Allen, J. E., Delcher, A. L., Guiliano, D. B., Miranda-Saavedra, D., Angiuoli, S. V., Creasy, T., Amedeo, P., Haas, B., El-Sayed, N. M., Wortman, J. R., Feldblyum, T., Tallon, L., Schatz, M., Shumway, M., Koo, H., Salzberg, S. L., Schobel, S., Pertea, M., Pop, M., White, O., Barton, G. J., Carlow, C. K., Crawford, M. J., Daub, J., Dimmic, M. W., Estes, C. F., Foster, J. M., Ganatra, M., Gregory, W. F., Johnson, N. M., Jin, J., Komuniecki, R., Korf, I., Kumar, S., Laney, S., Li, B. W., Li, W., Lindblom, T. H., Lustigman, S., Ma, D., Maina, C. V., Martin, D. M., McCarter, J. P., McReynolds, L., Mitreva, M., Nutman, T. B., Parkinson, J., Peregr’ın-Alvarez, J. M., Poole, C., Ren, Q., Saunders, L., Sluder, A. E., Smith, K., Stanke, M., Unnasch, T. R., Ware, J., Wei, A. D., Weil, G., Williams, D. J., Zhang, Y., Williams, S. A., Fraser-Liggett, C., Slatko, B., Blaxter, M. L., and Scott, A. L. 2007. Draft genome of the filarial nematode parasite Brugia malayi. Science 317:1756–1760.10.1126/science.1145406261379617885136
  8. Hunt, V. L., Tsai, I. J., Coghlan, A., Reid, A. J., Holroyd, N., Foth, B. J., Tracey, A., Cotton, J. A., Stanley, E. J., Beasley, H., Bennett, H. M., Brooks, K., Harsha, B., Kajitani, R., Kulkarni, A., Harbecke, D., Nagayasu, E., Nichol, S., Ogura, Y., Quail, M. A., Randle, N., Xia, D., Brattig, N. W., Soblik, H., Ribeiro, D. M., Sanchez-Flores, A., Hayashi, T., Itoh, T., Denver, D. R., Grant, W., Stoltzfus, J. D., Lok, J. B., Murayama, H., Wastling, J., Streit, A., Kikuchi, T., Viney, M., and Berriman, M. 2016. The genomic basis of parasitism in the Strongyloides clade of nematodes. Nature Genetics 48:299–307.10.1038/ng.3495494805926829753
  9. Smith, D. R. 2016. Goodbye genome paper, hello genome report: the increasing popularity of ‘genome announcements’ and their impact on science. Briefings in Functional Genomics 16:156–162.10.1093/bfgp/elw026543928627339634
  10. Stein, L. D., Bao, Z., Blasiar, D., Blumenthal, T., Brent, M. R., Chen, N., Chinwalla, A., Clarke, L., Clee, C., Coghlan, A., Coulson, A., D’Eustachio, P., Fitch, D. H., Fulton, L. A., Fulton, R. E., Griffiths-Jones, S., Harris, T. W., Hillier, L. W., Kamath, R., Kuwabara, P. E., Mardis, E. R., Marra, M. A., Miner, T. L., Minx, P., Mullikin, J. C., Plumb, R. W., Rogers, J., Schein, J. E., Sohrmann, M., Spieth, J., Stajich, J. E., Wei, C., Willey, D., Wilson, R. K., Durbin, R., and Waterston, R. H. 2003. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biology 1:E45.10.1371/journal.pbio.000004526189914624247
DOI: https://doi.org/10.21307/jofnem-2017-053 | Journal eISSN: 2640-396X | Journal ISSN: 0022-300X
Language: English
Page range: 125 - 126
Submitted on: Feb 1, 2017
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Published on: Jul 24, 2017
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2017 Dee R. Denver, Erik J. Ragsdale, W. Kelley Thomas, Inga A. Zasada, published by Society of Nematologists, Inc.
This work is licensed under the Creative Commons Attribution 4.0 License.