References
-
Katz
D S
Allen
G
Chue Hong
N
Parashar
M
Proctor
D
First Workshop on on Sustainable Software for Science: Practice and Experiences (WSSSPE): Submission and Peer-Review Process, and Results
2013
arXiv, 1311.3523. Available at
http://arxiv.org/abs/1311.3523 - Katz D S Choi S C T Lapp H Maheshwari K Löffler F Turk M Summary of the First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE1) Journal of Open Research Software 2014 2 1 10.5334/jors.an
-
Katz
D S
Allen
G
Chue Hong
N
Cranston
K
Parashar
M
Proctor
D
Second Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE2): Submission, Peer-Review and Sorting Process, and Results
2014
arXiv, 1411.3464. Available at
http://arxiv.org/abs/1411.3464 -
WSSSPE2 attendees
WSSSPE2 Collaborative Notes
Available at
https://docs.google.com/document/d/1-BxkYWDQ6nNNBXBStUL0xcKF9qCTlEALwf928J MemI/ (Accessed on 2015-02-15) -
Thaney
K
Designing for Truth, Scale, and Sustainability [slides]
2014
Retrieved from
http://www.slideshare.net/kaythaney/designing-for-truth-scale-and-sustainability-wssspe2-keynote -
The Dataverse Project
Available at
http://dataverse.org (Accessed on 2015-12-29) - Chue Hong N We are the 92% [slides] 2014 10.6084/m9.figshare.1243288
-
Venters
C
The Nebuchadnezzar Effect: Dreaming of Sustainable Software through Sustainable Software Architectures [poster]
2014
Retrieved from
http://figshare.com/articles/The_Nebuchadnezzar_Effect_Dreaming_of_Sustainable_Software_through_Sustainable_Software_Architectures/1243322 -
Pierce
M
Patching It Up, Pulling It Forward [poster]
2014
Retrieved from
http://wssspe.researchcomputing.org.uk/wp-content/uploads/2014/11/Pierce.pdf -
Peterson
J
Continuous Integration for Concurrent MOOSE Framework and Application Development on GitHub [poster]
2014
Retrieved from
https://drive.google.com/file/d/0B9BK7pg8se_iWkdBYkhkM1d4bkN3QVNoekFGWE9WODVnaUxB/view?pli=1 -
Patra
A
Execute it [poster]
2014
Retrieved from
http://wssspe.researchcomputing.org.uk/wp-content/uploads/2014/11/Patra.pdf -
Katz
D S
Smith
A
Implementing Transitive Credit with JSON-LD [poster]
2014
Retrieved from
http://dx.doi.org/10.6084/m9.figshare.1234063 -
Downs
R
Lenhardt
W C
Robinson
E
Davis
E
Weber
N
Community Recommendations for Improving Sustainable Scientific Software Practices [poster]
2014
Retrieved from
http://wssspe.researchcomputing.org.uk/wp-content/uploads/2014/11/Downs.pdf -
Boettiger
C
rOpenSci: Building Sustainable Software by Fostering a Diverse Community [poster]
2014
Retrieved from
http://wssspe.researchcomputing.org.uk/wp-content/uploads/2014/11/Boettiger1.pdf -
Blomer
J
The Need for a Versioned Data Analysis Environment [poster]
2014
Retrieved from
http://wssspe.researchcomputing.org.uk/wp-content/uploads/2014/11/Blomer.pdf - Rosado de Souza M Haines R Jay C Defining Sustainability through Developers’ Eyes: Recommendations from an Interview Study 2014 10.6084/m9.figshare.1111925 figshare, 1111925
- Downs R Lenhardt W C Robinson E Davis E Weber N Community Recommendations for Sustainable Scientific Software. ESIP Commons 2014 10.7269/P3VX0DFX P3VX0DFX
- Patra A Jones M Gallo S Marcus K Kosar T Role of Online Platforms, Communications and Workows in Developing Sustainable Software for Science Communities 2014 10.6084/m9.figshare.1112569 figshare, 1112569
- Pierce M Marru S Mattmann C WSSSPE2: Patching It Up, Pulling It Forward 2014 10.6084/m9.figshare.1112540 Figshare, 1112540
-
Shi
J
Seeking the Principles of Sustainable Software Engineering
2014
arXiv, 1405.4464. Available at
http://arxiv.org/abs/1405.4464 - Venters C C Griffiths M K Holmes V Ward R R Cooke D J The Nebuchadnezzar Effect: Dreaming of Sustainable Software through Sustainable Software Architectures 2014 10.6084/m9.figshare.1112484 Figshare, 1112484
-
ISO/IEC
ISO/IEC 25010: 2011 Systems and software engineering: Systems and Software Quality Requirements and Evaluation (SQuaRE)
System and software quality models
Available at
http://www.iso.org/iso/catalogue_detail.htm?csnumber=35733 -
Bourque
P
Fairley
R E
SWEBOK v3.0: Guide to the Software Engineering Body of Knowledge 2014 IEEE Press -
Bourne
P E
Ten Simple Rules Collection
PLOS Computational Biology
2005–2015
Retrieved from
http://www.ploscollections.org/article/browse/issue/info%3Adoi%2F10.1371%2Fissue.pcol.v03.i01 -
Spolsky
J
The Joel Test: 12 Steps to Better Code
Joel on Software
2000
joelonsftware.com [blog]. Available athttp://www.joelonsoftware.com/articles/fog0000000043.html - Crusoe M R Brown C T Channeling community contributions to scientific software: A hackathon experience 2014 10.6084/m9.figshare.1112541 figshare, 1112541
- Hanwell M O’Leary P O’Bara B Sustainable Software Ecosystems: Software Engineers, Domain Scientists, and Engineers Collaborating for Science 2014 10.6084/m9.figshare.1112482 figshare, 1112482
- Lenhardt W C Ahalt S Jones M Aukema J Hampton S Hespanh S R ISEES-WSSI Lessons for Sustainable Science Software from an Early Career Training Institute on Open Science Synthesis 2014 10.6084/m9.figshare.1112560 figshare, 1112560
-
Schossau
J
Wilson
G
Which Sustainable Software Practices Do Scientists Find Most Useful?
arXiv, 1407.6220. Available at
http://arxiv.org/abs/1407.6220 - Adams J Nudurupati S Gasparini N Hobley D Hutton E Tucker G Landlab: Sustainable Software Development in Practice 2014 10.6084/m9.figshare.1097629 figshare, 1097629
-
Allen
A
Schmidt
J
Looking before leaping: Creating a software registry
2014
arXiv, 1407.5378. Available at
http://arxiv.org/abs/1407.5378 - Boettiger C Hart T Chamberlain S Ram K Building software, building community: lessons from the ROpenSciproject 2014 10.6084/m9.figshare.1112581 figshare, 1112581
- Gil Y Moon E Howison J No Science Software is an Island: Collaborative Software Development Needs in Geosciences 2014 10.6084/m9.figshare.1112561 figshare, 1112561
- Habermann T Collette A Vincena S Benger W Billings J J Gerring M The Hierarchical Data Format (HDF): A Foundation for Sustainable Data and Software 2014 10.6084/m9.figshare.1112485 figshare, 1112485
-
Hutton
E
Piper
M
Overeem
I
Kettner
A
Syvitski
J
Building Sustainable Software – The CSDMS Approach
2014
arXiv, 1407.4106. Available at
http://arxiv.org/abs/1407.4106 -
Spencer
J S
Blunt
N S
Vigor
W A
Malone
F D
Foulkes
W M C
Shepherd
J J
The Highly Accurate NDEterminant (HANDE) quantum Monte Carlo project: Open-source stochastic diagonalisation for quantum chemistry
2014
arXiv; 1407.5407. Available at
http://arxiv.org/abs/1407.5407 -
Stalzer
M
Mentzel
C
A Preliminary Review of Influential Works in Data-Driven Discovery
2015
arXiv, 1503.08776. Available at
http://arxiv.org/abs/1503.08776 -
CASRAI
Project Credit
Accessed: 2015-03-31. Available at
http://credit.casrai.org -
Open Researcher Contributor ID (ORCID)
Available at
http://http://orcid.org/ (Accessed on 2015-03-31) - Howison J Bullard J Software in the scientific literature: Problems with seeing, finding, and using software mentioned in the biology literature. Journal of the Association for Information Science and Technology (JASIST) 2015 May 13 10.1002/asi.23538 Article first published online
- Dubey A Antypas K Ganapathy M K Reid L B Riley K Sheeler D Extensible Component Based Architecture for FLASH, A Massively Parallel, Multiphysics Simulation Code Parallel Computing 2009 35 10–11 512 522
- Howison J Retract bit-rotten publications: Aligning incentives for sustaining scientific software 2014 10.6084/m9.figshare.1111632 figshare, 1111632
-
Katz
D S
Smith
A M
Implementing Transitive Credit with JSON-LD
2014
arXiv, 1407.5117. Available at
http://arxiv.org/abs/1407.5117 - Kelley I Publish or perish: the credit deficit to making software and generating data 2014 10.6084/m9.figshare.1112579 figshare, 1112579
-
Blomer
J
Berzano
D
Buncic
P
Charalampidis
I
Ganis
G
Lestaris
G
The Need for a Versioned Data Analysis Software Environment
2014
arXiv, 1407.3063. Available at
http://arxiv.org/abs/1407.3063 - Chamberlain R Schommer J Using Docker to Support Reproducible Research 2014 10.6084/m9.figshare.1101910 figshare, 1101910
- Chue Hong N Minimal information for reusable scientific software 2014 10.6084/m9.figshare.1112528 figshare, 1112528
-
Crick
T
Hall
B A
Ishtiaq
S
“Can I Implement Your Algorithm?”: A Model for Reproducible Research Software
2014
arXiv, 1407.5981. Available at
http://arxiv.org/abs/1407.5981 - Marker B Batory D Zee F G V van de Geijn R Making Scientific Computing Libraries Forward Compatible 2014 10.6084/m9.figshare.1101873 figshare, 1101873
- Piccolo S Building Portable Analytical Environments to improve sustainability of computational-analysis pipelines in the sciences 2014 10.6084/m9.figshare.1112571 figshare, 1112571
-
Brown
A
Wilson
G
The Architecture of Open Source Applications
2012
lulu.com. Available at
http://aosabook.org -
Wilson
G
Why We Don’t Teach Testing (Even Though We’d Like To) [blog]
2014
Available at
http://software-carpentry.org/blog/2014/10/why-we-dont-teach-testing.html - Hook D Kelly D Mutation Sensitivity Testing Computing in Science Engineering 2009 Nov 11 6 40 47
- Hook D Kelly D Testing for trustworthiness in scientific software Software Engineering for Computational Science and Engineering, SECSE ‘09 2009 59 64 ICSE Workshop
- Dubey A Weide K Lee D Bachan J Daley C Olofin S Ongoing verification of a multiphysics community code: FLASH Software: Practice and Experience 2015 45 2 233 244 10.1002/spe.2220
- Clune T Rilee M Rouson D Testing as an Essential Process for Developing and Maintaining Scientific Software 2014 10.6084/m9.figshare.1112520 figshare, 1112520
-
Petre
M
Wilson
G
Code Review For and By Scientists
2014
arXiv, 1407.5648. Available at
http://arxiv.org/abs/1407.5648 - Slaughter A E Gaston D R Peterson J Permann C J Andrs D Miller J M Continuous Integration for Concurrent MOOSE Framework and Application Development on GitHub 2014 10.6084/m9.figshare.1112585 figshare, 1112585