References
- Jacquez, J A 1996 Compartmental analysis in biology and medicine. 3rd edn. Ann Arbor, Michigan: BioMedware.
- Shotwell, M S, Zhou, M and Fissell, W H 2016 ‘Optimal design of perturbations for individual two-compartment pharmacokinetic analysis’. Journal of Biopharmaceutical Statistics, 26(5): 803–815. DOI: 10.1080/10543406.2015.1074918
- Eksborg, S 2013 ‘Individual and population pharmacokinetic compartment analysis: A graphic procedure for quantification of predictive performance’. Journal of Drug Assessment, 2(1): 135–140. DOI: 10.3109/21556660.2013.838569
- Olsen, M J, Young, A P and Ashford, S A 2012 ‘TopCAT-Topographical Compartment Analysis Tool to analyze seacliff and beach change in GIS’. Computers and Geosciences, 45: 284–292. DOI: 10.1016/j.cageo.2011.11.007
- Bjerregaard, P, Bjørn, L, Nørum, U and Pedersen, K L 2005 ‘Cadmium in the shore crab Carcinus maenas: Seasonal variation in cadmium content and uptake and elimination of cadmium after administration via food’. Aquatic Toxicology, 72: 5–15. DOI: 10.1016/j.aquatox.2004.11.018
- Kang, Y and Castillo-Chavez, C 2012 ‘Multiscale analysis of compartment models with dispersal’. Journal of Biological Dynamics, 6(sup2): 50–79. DOI: 10.1080/17513758.2012.713125
- Hirabayashim, Y, Yoon, B-I, Tsuboi, I, Huo, Y, Kodama, Y, Kanno, J, Ott, T, Trosko, J E and Inoue, T 2007 ‘Membrane Channel Connexin 32 Maintains Lin–/c-kit+ Hematopoietic Progenitor Cell Compartment: Analysis of the Cell Cycle’. Journal of Membrane Biology, 217: 105–113. DOI: 10.1007/s00232-007-9042-z
- Røe, K, Aleksandersen, T B, Kristian, A, Nilsen, L B, Seierstad, T, Qu, H, Ree, A H, Olsen, D R and Malinen, E 2010 ‘Preclinical dynamic 18F-FDG PET – tumor characterization and radiotherapy response assessment by kinetic compartment analysis’. Acta Oncologica, 49(7): 914–21. DOI: 10.3109/0284186X.2010.498831
- Schulze, L M, Britto, D T, Li, M and Kronzucker, H J 2012 ‘A pharmacological analysis of high-affinity sodium transport in barley (Hordeum vulgare L.): A 24Na+/42K+ study’. Journal of Experimental Botany, 63(7): 2479–2489. DOI: 10.1093/jxb/err419
- Hamam, A M, Britto, D T, Flam-Shepherd, R and Kronzucker, H J 2016 ‘Measurement of Differential Na+ Efflux from Apical and Bulk Root Zones of Intact Barley and Arabidopsis Plants’. Frontiers in Plant Science, 7(272): 1–8. DOI: 10.3389/fpls.2016.00272
- Balkos, K D, Britto, D T and Kronzucker, H J 2010 ‘Optimization of ammonium acquisition and metabolism by potassium in rice (Oryza sativa L. cv. IR-72)’. Plant, Cell & Environment, 33: 23–34. DOI: 10.1111/j.1365-3040.2009.02046.x
- Coskun, D, Britto, D T, Kochian, L V and Kronzucker, H J 2016 ‘How high do ion fluxes go? A re-evaluation of the two-mechanism model of K+ transport in plant roots’. Plant Science, 243: 96–104. DOI: 10.1016/j.plantsci.2015.12.003
- Wang, L and Quintiere, J G 2009 ‘An analysis of compartment fire doorway flows’. Fire Safety Journal, 44(5): 718–731. DOI: 10.1016/j.firesaf.2009.02.001
- Britto, D T and Kronzucker, H J 2003 ‘Trans-stimulation of 13NH4+ efflux provides evidence for the cytosolic origin of tracer in the compartmental analysis of barley roots’. Functional Plant Biology, 30(12): 1233–1238. DOI: 10.1071/FP03147
- Britto, D T, Szczerba, M W and Kronzucker, H J 2006 ‘A new, non-perturbing, sampling procedure in tracer exchange measurements’. Journal of Experimental Botany, 57(6): 1309–1314. DOI: 10.1093/jxb/erj105
- Britto, D T and Kronzucker, H J 2012
‘Isotope techniques to study kinetics of Na+ and K+ transport under salinity conditions’ . In: Shabala, S and Cuin, T A (eds.), Methods in Molecular Biology, 389–398. Humana Press. DOI: 10.1007/978-1-61779-986-0 - Walker, N A and Pitman, M G 1976
‘Measurement of Fluxes across Membranes’ . In: Lüttge, U and Pitman, M G (eds.), Encyclopedia of Plant Physiology, Vol. 2 Part a: 93–126. Berlin, Germany: Springer-Verlag. DOI: 10.1007/978-3-642-66227-0_5 - Lee, R B and Clarkson, D T 1986 ‘Nitrogen-13 studies of nitrate fluxes in barley roots I. Compartmental analysis from measurements of 13N efflux’. Journal of Experimental Botany, 37(185): 1753–1767. DOI: 10.1093/jxb/37.12.1753
- Britto, D T, Ebrahimi-Ardebili, S, Hamam, A M, Coskun, D and Kronzucker, H J 2010 ‘42K analysis of sodium-induced potassium efflux in barley: Mechanism and relevance to salt tolerance’. New Phytologist, 186: 373–384. DOI: 10.1111/j.1469-8137.2009.03169.x
- Siddiqi, M Y, Glass, A D M and Ruth, T J 1991 ‘Studies of the uptake of nitrate in barley III. Compartmentation of NO3–’. Journal of Experimental Botany, 42(244): 1455–1463. DOI: 10.1104/pp.99.4.1582
- Kronzucker, H J, Szczerba, M W and Britto, D T 2003 ‘Cytosolic potassium homeostasis revisited: 42K-tracer analysis in Hordeum vulgare L. reveals set-point variations in [K+]’. Planta, 217: 540–546. DOI: 10.1007/s00425-003-1032-5
- Britto, D T and Kronzucker, H J 2001 ‘Can unidirectional influx be measured in higher plants? A mathematical approach using parameters from efflux analysis’. New Phytologist, 150: 37–47. DOI: 10.1046/j.1469-8137.2001.00080.x
- Kronzucker, H J, Siddiqi, M Y and Glass, A 1995 ‘Analysis of 13NH4+ Efflux in Spruce Roots: A Test Case for Phase Identification in Compartmental Analysis’. Plant Physiology, 109: 481–490. DOI: 10.1104/pp.109.2.481
- Coskun, D, Britto, D T and Kronzucker, H J 2010 ‘Regulation and mechanism of potassium release from barley roots: an in planta 42K+ analysis’. New Phytologist, 188: 1028–1038. DOI: 10.1111/j.1469-8137.2010.03436.x
- Coskun, D, Britto, D T, Li, M, Becker, A and Kronzucker, H J 2013 ‘Rapid Ammonia Gas Transport Accounts for Futile Transmembrane Cycling under NH3/NH4+ Toxicity in Plant Roots’. Plant Physiology, 163: 1859–1867. DOI: 10.1104/pp.113.225961
- Coskun, D, Britto, D T, Li, M, Oh, S and Kronzucker, H J 2013 ‘Capacity and plasticity of potassium channels and high-affinity transporters in roots of barley and Arabidopsis’. Plant Physiology, 162: 496–511. DOI: 10.1104/pp.113.215913
- Behl, R and Jeschke, W D 1982 ‘Potassium Fluxes in Excised Barley Roots’. Journal of Experimental Botany, 33(135): 584–600. DOI: 10.1093/jxb/33.4.584
- Jeschke, W D 1982 ‘Shoot-Dependent Regulation of Sodium and Potassium Fluxes in Roots of Whole Barley Seedlings’. Journal of Experimental Botany, 33(135): 601–618. DOI: 10.1093/jxb/33.4.601
- Memon, A R, Saccomani, M and Glass, A D M 1985 ‘Efficiency of Potassium Utilization by Barley Varieties: The Role of Subcellular Compartmentation’. Journal of Experimental Botany, 36(173): 1860–1876. DOI: 10.1093/jxb/36.12.1860
- Wang, M Y, Siddiqi, M Y, Ruth, T J and Glass, A D M 1993 ‘Ammonium Uptake by Rice Roots I. Fluxes and Subcellular Distribution of 13NH4+’. Plant Physiology, 103: 1249–1258. DOI: 10.1104/pp.103.4.1249
- Coskun, D, Britto, D T, Hamam, A M and Kronzucker, H J 2014 ‘Measuring fluxes of mineral nutrients and toxicants in plants with radioactive tracers’. Journal of Visualized Experiments, 90:
e51877 . DOI: 10.3791/51877 - Barrett, P H R, Bell, B M, Cobelli, C, Golde, H, Schumitzky, A, Vicini, P and Foster, D M 1998 ‘SAAM II: Simulation, Analysis, and Modeling Software for tracer and pharmacokinetic studies’. Metabolism, 47(4): 484–492. DOI: 10.1016/S0026-0495(98)90064-6
- Zhang, Y, Huo, M, Zhou, J and Xie, S 2010
‘PKSolver: An add-in program for pharmacokinetic and pharmacodynamic data analysis in Microsoft Excel’ . Computer Methods and Programs in Biomedicine, 99(3): 306–314. Elsevier. DOI: 10.1016/j.cmpb.2010.01.007 - Tanswell, P and Koup, J 1993 ‘TopFit: A PC-based pharmacokinetic/pharmacodynamic data analysis program’. International Journal of Clinical Pharmacology, Therapy, and Toxicology, 31(10): 514–520.
- Britto, D T and Kronzucker, H J 2013
‘Flux Measurements of Cations Using Radioactive Tracers’ . In: Walker, J M (ed.), Methods in Molecular Biology, 161–170. Humana Press. DOI: 10.1007/978-1-62703-152-3_10 - Kronzucker, H J, Siddiqi, M Y, Glass, A D M and Kirk, G J D 1999 ‘Nitrate-Ammonium Synergism in Rice. A Subcellular Flux Analysis’. Plant physiology, 119(3): 1041–1046. DOI: 10.1104/pp.119.3.1041
- Malagoli, P, Britto, D T, Schulze, L M and Kronzucker, H J 2008 ‘Futile Na+ cycling at the root plasma membrane in rice (Oryza sativa L.): Kinetics, energetics, and relationship to salinity tolerance’. Journal of Experimental Botany, 59(15): 4109–4117. DOI: 10.1093/jxb/ern249
- Coskun, D, Britto, D T and Kronzucker, H J 2014 ‘The physiology of channel-mediated K+ acquisition in roots of higher plants’. Physiologia Plantarum, 151(3): 305–312. DOI: 10.1111/ppl.12174
- Bendersky, E 2008 matplotlib with wxPython GUIs. Available at:
http://eli.thegreenplace.net/2008/08/01/matplotlib-with-wxpython-guis/ .