References
- 1Siegel, RL, Miller, KD and Jemal, A. Cancer statistics. CA Cancer J Clin. 2019; 69(1): 7–34. DOI: 10.3322/caac.21551
- 2Berry, DA, Cronin, KA, Plevritis, SK, Fryback, DG, Clarke, L, Zelen, M, Mandelblatt, JS, Yakovlev, AY, Habbema, JD and Feuer, EJ. Effect of screening and adjuvant therapy on mortality from breast cancer. N Engl J Med. 2005; 353(17): 1784–1792. DOI: 10.1056/NEJMoa050518
- 3Zhu, Y, Brown, HN, Zhang, Y, Stevens, RG and Zheng, T. Period3 structural variation: a circadian biomarker associated with breast cancer in young women. Cancer Epidemiol Biomarkers Prev. 2005; 14(1): 268–270.
- 4Savard, J, Ivers, H, Savard, MH and Morin, CM. Cancer treatments and their side effects are associated with aggravation of insomnia: Results of a longitudinal study. Cancer. 2015; 121: 1703–1711. DOI: 10.1002/cncr.29244
- 5Savard, J, Ivers, H, Villa, J, Caplette-Gingras, A and Morin, C. Natural course of insomnia comorbid with cancer: an 18-month longitudinal study. J Clin Oncol. 2011; 29(26): 3580–3586. DOI: 10.1200/JCO.2010.33.2247
- 6Nabieva, N, Fehm, T, Häberle, L, de Waal, J, Rezai, M, Baier, B, Baake, G, Kolberg, H, Guggenberger, M, Warm, M, Harbeck, N, Wuerstlein, R, Deuker, J, Dall, P, Richter, B, Wachsmann, G, Brucker, C, Siebers, JW, Popovic, M, Kuhn, T, Wolf, C, Vollert, H, Breitbach, G, Janni, W, Landthaler, R, Kohls, A, Rezek, D, Noesselt, T, Fischer, G, Henschen, S, Praetz, T, Heyl, V, Kühn, T, Krauss, T, Thomssen, C, Hohn, A, Tesch, H, Mundhenke, C, Hein, A, Hack, CC, Schmidt, K, Belleville, E, Brucker, SY, Kümmel, S, Beckmann, MW, Wallwiener, D, Hadji, P and Fasching, PA. Influence of side-effects on early therapy persistence with letrozole in post-menopausal patients with early breast cancer: Results of the prospective EvAluate-TM study. Eur J Cancer. 2018; 96: 82–90. DOI: 10.1016/j.ejca.2018.03.020
- 7Dhruva, A, Paul, SM, Cooper, BA, Lee, K, West, C, Aouizerat, BE, Dunn, LB, Swift, PS, Wara, W and Miaskowski, C. A longitudinal study of measures of objective and subjective sleep disturbance in patients with breast cancer before, during, and after radiation therapy. J Pain Symptom Manage. 2012; 44(2): 215–228. DOI: 10.1016/j.jpainsymman.2011.08.010
- 8Fontes, F, Pereira, S, Costa, AR, Gonçalves, M and Lunet, N. The impact of breast cancer treatments on sleep quality 1 year after cancer diagnosis. Support Care Cancer. 2017; 25(11): 3529–3536. DOI: 10.1007/s00520-017-3777-6
- 9Gottlieb, D, O’Connor, GT and Wilk, JB. Genome-wide association of sleep and circadian phenotypes. BMC Med Genet. 2007; 8(Suppl 1): S9. DOI: 10.1186/1471-2350-8-S1-S9
- 10Alfaro, E, Dhruva, A, Langford, DJ, Koetters, T, Merriman, JD, West, C, Dunn, LB, Paul, SM, Cooper, B and Cataldo, J. Associations between cytokine gene variations and self-reported sleep disturbance in women following breast cancer surgery. European Journal of Oncology Nursing. 2014; 18(1): 85–93. DOI: 10.1016/j.ejon.2013.08.004
- 11Doong, SH, Dhruva, A, Dunn, LB, West, C, Paul, SM, Cooper, BA, Elboim, C, Abrams, G, Merriman, JD, Langford, DJ, Leutwyler, H, Baggott, C, Kober, K, Aouizerat, BE and Miaskowski, C. Associations between cytokine genes and a symptom cluster of pain, fatigue, sleep disturbance, and depression in patients prior to breast cancer surgery. Biol Res Nurs. 2015; 17(3): 237–247. DOI: 10.1177/1099800414550394
- 12Miaskowski, C, Cooper, BA, Dhruva, A, Dunn, LB, Langford, DJ, Cataldo, JK, Baggott, CR, Merriman, JD, Dodd, M, Lee, K, West, C, Paul, SM and Aouizerat, BE. Evidence of associations between cytokine genes and subjective reports of sleep disturbance in oncology patients and their family caregivers. PLoS One. 2012; 7(7): e40560–e40560. DOI: 10.1371/journal.pone.0040560
- 13Aouizerat, BE, Dodd, MJ, Lee, KA, West, C, Paul, SM, Cooper, BA, Wara, W, Swift, P, Dunn, LB and Miaskowski, C. Preliminary evidence of a genetic association between tumor necrosis factor alpha and the severity of sleep disturbance and morning fatigue. Biol Res Nurs. 2009; 11(1): 27–41. DOI: 10.1177/1099800409333871
- 14Illi, J, Miaskowski, C, Cooper, B, Levine, JD, Dunn, L, West, C, Dodd, M, Dhruva, A, Paul, SM, Baggott, C, Cataldo, J, Langford, D, Schmidt, B and Aouizerat, BE. Association between pro- and anti-inflammatory cytokine genes and a symptom cluster of pain, fatigue, sleep disturbance, and depression. Cytokine. 2012; 58(3): 437–447. DOI: 10.1016/j.cyto.2012.02.015
- 15Sehgal, A and Mignot, E. Genetics of sleep and sleep disorders. Cell. 2011; 146(2): 194–207. DOI: 10.1016/j.cell.2011.07.004
- 16Gamble, KL, Berry, R, Frank, SJ and Young, ME. Circadian clock control of endocrine factors. Nat Rev Endocrinol. 2014; 10(8): 466–475. DOI: 10.1038/nrendo.2014.78
- 17Truong, T, Liquet, B, Menegaux, F, Plancoulaine, S, Laurent-Puig, P, Mulot, C, Cordina-Duverger, E, Sanchez, M, Arveux, P, Kerbrat, P, Richardson, S and Guénel, P. Breast cancer risk, nightwork, and circadian clock gene polymorphisms. Endocr Relat Cancer. 2014; 21(4): 629–638. DOI: 10.1530/ERC-14-0121
- 18Saligan, LN and Kim, HS. A systematic review of the association between immunogenomic markers and cancer-related fatigue. Brain Behav Immun. 2012; 26(6): 830–848. DOI: 10.1016/j.bbi.2012.05.004
- 19Tariman, JD and Dhorajiwala, S. Genomic Variants Associated With Cancer-Related Fatigue: A Systematic Review. Clin J Oncol Nurs. 2016; 20(5): 537–546. DOI: 10.1188/16.CJON.537-546
- 20Berger, AM, Kupzyk, KA, Djalilova, DM and Cowan, KH. Breast Cancer Collaborative Registry informs understanding of factors predicting sleep quality. Support Care Cancer; 2018. DOI: 10.1007/s00520-018-4417-5
- 21Sherman, S, Shats, O, Fleissner, E, Bascom, G, Yiee, K, Copur, M, Crow, K, Rooney, J, Mateen, Z, Ketcham, MA, Feng, J, Sherman, A, Gleason, M, Kinarsky, L, Silva-Lopez, E, Edney, J, Reed, E, Berger, A and Cowan, K. Multicenter breast cancer collaborative registry. Cancer Inform. 2011; 10: 217–226. DOI: 10.4137/CIN.S7845
- 22Buysse, D, Reynolds, CF,
3rd , Monk, TH, Berman, SR and Kupfer, DJ. The Pittsburgh Sleep Quality Index: a new instrument for psychiatric practice and research. Psychiatry Res. 1989; 28(2): 193–213. DOI: 10.1016/0165-1781(89)90047-4 - 23Buysse, D, Reynolds, CF,
3rd , Monk, TH, Hoch, CC, Yeager, AL and Kupfer, DJ. Quantification of subjective sleep quality in healthy elderly men and women using the Pittsburgh Sleep Quality Index (PSQI). Sleep. 1991; 14(4): 331–338. - 24Andrews, S. FastQC A Quality Control tool for High Throughput Sequence Data; 2014.
- 25Li, H and Durbin, R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics. 2010; 26(5): 589–595. DOI: 10.1093/bioinformatics/btp698
- 26McKenna, A, Hanna, M, Banks, E, Sivachenko, A, Cibulskis, K, Kernytsky, A, Garimella, K, Altshuler, D, Gabriel, S, Daly, M and DePristo, MA. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010; 20(9): 1297–1303. DOI: 10.1101/gr.107524.110
- 27DePristo, MA, Banks, E, Poplin, R, Garimella, KV, Maguire, JR, Hartl, C, Philippakis, AA, del Angel, G, Rivas, MA, Hanna, M, McKenna, A, Fennell, TJ, Kernytsky, AM, Sivachenko, AY, Cibulskis, K, Gabriel, SB, Altshuler, D and Daly, MJ. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 2011; 43(5): 491–498. DOI: 10.1038/ng.806
- 28Van der Auwera, GA, Carneiro, MO, Hartl, C, Poplin, R, Del Angel, G, Levy-Moonshine, A, Jordan, T, Shakir, K, Roazen, D, Thibault, J, Banks, E, Garimella, KV, Altshuler, D, Gabriel, S and DePristo, MA. From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline. Curr Protoc Bioinformatics. 2013; 43: 11.10. 1–33. DOI: 10.1002/0471250953.bi1110s43
- 29Cibulskis, K, Lawrence, MS, Carter, SL, Sivachenko, A, Jaffe, D, Sougnez, C, Gabriel, S, Meyerson, M, Lander, ES and Getz, G. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat Biotechnol. 2013; 31(3): 213–219. DOI: 10.1038/nbt.2514
- 30Garrison, E and Marth, G. Haplotype-based variant detection from short-read sequencing; 2012.
- 31Lai, Z, Markovets, A, Ahdesmaki, M, Chapman, B, Hofmann, O, McEwen, R, Johnson, J, Dougherty, B, Barrett, JC and Dry, JR. VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research. Nucleic Acids Res. 2016; 44(11): e108. DOI: 10.1093/nar/gkw227
- 32Koboldt, DC, Chen, K, Wylie, T, Larson, DE, McLellan, MD, Mardis, ER, Weinstock, GM, Wilson, RK and Ding, L. VarScan: variant detection in massively parallel sequencing of individual and pooled samples. Bioinformatics. 2009; 25(17): 2283–2285. DOI: 10.1093/bioinformatics/btp373
- 33Barrett, JC, Fry, B, Maller, J and Daly, MJ. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics. 2005; 21(2): 263–265. DOI: 10.1093/bioinformatics/bth457
- 34Sanford, SD, Wagner, LI, Beaumont, JL, Butt, Z, Sweet, JJ and Cella, D. Longitudinal prospective assessment of sleep quality: before, during, and after adjuvant chemotherapy for breast cancer. Support Care Cancer. 2013; 21(4): 959–967. DOI: 10.1007/s00520-012-1612-7
- 35Li, W, Kwok, CC, Chan, DC, Ho, AW, Ho, CS, Zhang, J, Wing, YK, Wang, F and Tse, LA. Disruption of sleep, sleep-wake activity rhythm, and nocturnal melatonin production in breast cancer patients undergoing adjuvant chemotherapy: prospective cohort study. Sleep Med. 2019; 55: 14–21. DOI: 10.1016/j.sleep.2018.11.022
- 36Goel, N. Genetic Markers of Sleep and Sleepiness. Sleep Med Clin. 2017; 12(3): 289–299. DOI: 10.1016/j.jsmc.2017.03.005
- 37Mazzoccoli, G, Laukkanen, MO, Vinciguerra, M, Colangelo, T and Colantuoni, V. A Timeless Link Between Circadian Patterns and Disease. Trends Mol Med. 2016; 22(1): 68–81. DOI: 10.1016/j.molmed.2015.11.007
- 38Evans, DS, Parimi, N, Nievergelt, CM, Blackwell, T, Redline, S, Ancoli-Israel, S, Orwoll, ES, Cummings, SR, Stone, KL, Tranah, GJ, and Study of Osteoporotic Fractures (SOF) and Osteoporotic Fractures in Men (MrOS) Study Group. Common genetic variants in ARNTL and NPAS2 and at chromosome 12p13 are associated with objectively measured sleep traits in the elderly. Sleep. 2013; 36(3): 431–446. DOI: 10.5665/sleep.2466
- 39Scheinfeldt, LB, Gharani, N, Kasper, RS, Schmidlen, TJ, Gordon, ES, Jarvis, JP, Delaney, S, Kronenthal, CJ, Gerry, NP and Christman, MF. Using the Coriell Personalized Medicine Collaborative Data to conduct a genome-wide association study of sleep duration. Am J Med Genet B Neuropsychiatr Genet. 2015; 168(8): 697–705. DOI: 10.1002/ajmg.b.32362
- 40Zhu, Y, Leaderer, D, Guss, C, Brown, HN, Zhang, Y, Boyle, P, Stevens, RG, Hoffman, A, Qin, Q, Han, X and Zheng, T. Ala394Thr polymorphism in the clock gene NPAS2: a circadian modifier for the risk of non-Hodgkin’s lymphoma. Int J Cancer. 2007; 120(2): 432–435. DOI: 10.1002/ijc.22321
- 41Hoffman, AE, Yi, C, Zheng, T, Stevens, RG, Leaderer, D, Zhang, Y, Holford, TR, Hansen, J, Paulson, J and Zhu, Y. CLOCK in breast tumorigenesis: genetic, epigenetic, and transcriptional profiling analyses. Cancer Res. 2010; 70(4): 1459–1468. DOI: 10.1158/0008-5472.CAN-09-3798
- 42Benna, C, Helfrich-Forster, C, Rajendran, S, Monticelli, H, Pilati, P, Nitti, D and Mocellin, S. Genetic variation of clock genes and cancer risk: a field synopsis and meta-analysis. Oncotarget. 2017; 8(14): 23978–23995. DOI: 10.18632/oncotarget.15074
