FAIR Data Workflow Implementation and Assessment for Ion-Exchange Chromatography in Plasma Science
References
- Angles, R. (2018) The Property Graph Database Model. Alberto Mendelzon Workshop on Foundations of Data Management. Available at:
https://ceur-ws.org/Vol-2100/paper26.pdf (Accessed: 19 July 2025). - ASTM E1151:1993 (1993) Standard Practice for Ion Chromatography Terms and Relationships. Available at: 10.1520/E1151-93R19
- Balazinski, M., Hahn, V., Wagner, R., Basen, M., Weltmann, K.D. and Kolb, J.F. (2026) ‘Safety evaluation of physical plasma for water treatment in recirculating aquaculture systems’, Aquacultural Engineering, 112, article
102646 . Available at: 10.1016/j.aquaeng.2025.102646 - Balazinski, M., Hahn, V., Wagner, R., Schmidt, M., Höhne, C., Arndt, G.-M., Basen, M., Weltmann, K.D. and Kolb, J.F. (2025) ‘Cold atmospheric plasma and pulsed electric fields as alternative decontamination technologies in recirculating aquaculture systems’, Aquacultural Engineering, 110, article
102543 . Available at: 10.1016/j.aquaeng.2025.102543 - Batchelor, C. (2019) Chemical methods ontology. Available at:
https://github.com/rsc-ontologies/rsc-cmo (Accessed: 19 July 2025). - Candan, K.S., Liu, H. and Suvarna, R. (2001) ‘Resource description framework: metadata and its applications’, SIGKDD Exploration Newsletter, 3(1), pp. 6–19. Available at: 10.1145/507533.507536
- Carpi, N., Minges, A. and Piel, M. (2017) ‘eLabFTW: an open source laboratory notebook for research labs’, The Journal of Open Source Software, 2(12), p.
146 . Available at: 10.21105/joss.00146 - Chaerony Siffa, I., Schäfer, J. and Becker, M. (2022) ‘Adamant: a JSON schema-based metadata editor for research data management workflows’, F1000Research, 11, p.
475 . Available at: 10.12688/f1000research.110875.1 - Chaerony Siffa, I., Wagner, R. and Becker, M.M. (2025) ‘Semantic information management in low-temperature plasma science and technology with VIVO’, Journal of Physics D: Applied Physics, 58, p.
235204 . Available at: 10.1088/1361-6463/add710 - Choi, B.B.R., Song, K.W., Lee, H.J., Park, S.R. and Kim, G.C. (2024) ‘Effects of no-ozone cold plasma and mouse mesenchymal stem cell treatments on wound healing in a mouse skin model’, Biochemical and Biophysical Research Communications, 738, article
150562 . Available at: 10.1016/j.bbrc.2024.150562 - Clarke, D.J.B., Wang, L., Jones, A., Wojciechowicz, M.L., Torre, D.,Jagodnik, K.M., Jenkins, S.L., McQuilton, P., Flamholz, Z., Silverstein, M.C., Schilder, B.M., Robasky, K., Castillo, C., Idaszak, R., Ahalt, S.C., Williams, J., Schurer, S., Cooper, D.J., de Miranda Azevedo, R., Klenk, J.A., Haendel, M.A., Nedzel, J., Avillach, P., Shimoyama, M.E., Harris, R.M., Gamble, M., Poten, R., Charbonneau, A.L., Larkin, J., Brown, C.T., Bonazzi, V.R., Dumontier, M.J., Sansone, S.A. and Ma’ayan, A. (2019) ‘FAIRshake: toolkit to evaluate the FAIRness of research digital resources’, Cell Systems, 9(5), pp. 417–421. Available at: 10.1016/j.cels.2019.09.011
- Committee on Accelerating Behavioral Science through Ontology Development and Use (2022) Ontologies in the behavioral sciences: accelerating research and the spread of knowledge. Washington, DC: National Academies Press. Available at:
https://www.ncbi.nlm.nih.gov/books/NBK584339/ - Das, A., Mitra, A., Bhagat, S.N. and Paul, S. (2020) ‘Issues and concepts of graph database and a comparative analysis on list of graph database tools’, International Conference on Computer Communication and Informatics (ICCCI), pp. 1–6. Available at: 10.1109/ICCCI48352.2020.9104202
- Das, S., Mishra, B., Mohapatra, S., Tripathi, B.P., Kar, S. and Bhatt, S. (2024) ‘Efficacy of argon cold atmospheric pressure plasma jet on hospital surface decontamination and its impact on the surface property’, Physica Scripta, 99(2), p.
025601 . Available at: 10.1088/1402-4896/ad1869 - DataCite Metadata Working Group (2024) DataCite metadata schema for the publication and citation of research data and other research outputs. Available at: 10.14454/mzv1-5b55 (Accessed: 19 July 2025).
- Fernández-López, M., Gomez-Perez, A. and Juristo, N. (1997) ‘METHONTOLOGY: from ontological art towards ontological engineering’, Engineering Workshop on Ontological Engineering. Available at:
https://aaai.org/papers/0005-ss97-06-005-methontology-from-ontological-art-towards-ontological-engineering/ (Accessed: 19 July 2025). - Franke, S., Paulet, L., Schäfer, J., O’Connell, D. and Becker, M.M. (2020) ‘Plasma-MDS, a metadata schema for plasma science with examples from plasma technology’, Scientific Data, 7, article
439 . Available at: 10.1038/s41597-020-00771-0 - Golda, J., Biskup, B., Layes, V., Winzer, T. and Benedikt, J. (2020) ‘Vacuum ultraviolet spectroscopy of cold atmospheric pressure plasma jets’, Plasma Processes and Polymers, 17(6), p.
e1900216 . Available at: 10.1002/ppap.201900216 - Gruber, T.R. (1995) ‘Toward principles for the design of ontologies used for knowledge sharing?’, International Journal of Human-Computer Studies, 43(5–6), pp. 907–928. Available at: 10.1006/ijhc.1995.1081
- Harrieder, E.-M., Kretschmer, F., Dunn, W., Böcker, S. and Witting, M. (2022) ‘Critical assessment of chromatographic metadata in publicly available metabolomics data repositories’, Metabolomics, 18, article
97 . Available at: 10.1007/s11306-022-01956-x - Javed, R., Mumtaz, S., Amsalu, K. and Choi, E.H. (2024) ‘Plasma treated water with metal ions enhances Pak Choi growth, salinity tolerance and accumulation of primary metabolites’, Fundamental Research, 5(3), pp. 1011–1024. Available at: 10.1016/j.fmre.2024.06.010
- Kim, S. and Kim, C.H. (2021) ‘Applications of plasma-activated liquid in the medical field’, Biomedicines, 9(11), p.
1700 . Available at: 10.3390/biomedicines9111700 - Krans, N.A., Ammar, A., Nymark, P., Willighagen, E.L., Bakker, M.I. and Quik, J.T.K. (2022) ‘FAIR assessment tools: evaluating use and performance’, NanoImpact, 27, article
100402 . Available at: 10.1016/j.impact.2022.100402 - Larriba-Pey, J.L., Martínez-Bazán, N. and Domínguez-Sal, D. (2014) ‘Introduction to graph databases’, Reasoning Web. Reasoning on the Web in the Big Data Era: 10th International Summer School 2014, pp. 171–194. Available at: 10.1007/978-3-319-10587-1_4
- Musen, M.A. and Protégé Team (2015) ‘The protege project: a look back and a look forward’, AI Matters, 1(4), pp. 4–12. Available at: 10.1145/2757001.2757003
- Orchard, S.E. (2025) ‘What have data standards ever done for us?’, Molecular & Cellular Proteomics, 24(6), p.
100933 . Available at: 10.1016/j.mcpro.2025.100933 - Pergl, R., Hooft, R., Suchánek, M., Knaisl, V. and Slifka, J. (2019) ‘“Data Stewardship Wizard”: a tool bringing together researchers, data stewards, and data experts around data management planning’, Data Science Journal, 18, p.
59 . Available at: 10.5334/dsj-2019-059 - Schnabel, U., Balazinski, M., Wagner, R., Stachowiak, J., Boehm, D., Andrasch, M., Bourke, P. and Ehlbeck, J. (2021) ‘Optimizing the application of plasma functionalised water (PFW) for microbial safety in fresh-cut endive processing’, Innovative Food Science & Emerging Technologies, 72, article
102745 . Available at: 10.1016/j.ifset.2021.102745 - Shearer, R., Motik, B. and Horrocks, I. (2008) HermiT: a highly-efficient OWL reasoner, OWL: Experiences and Directions. Available at:
https://www.cs.ox.ac.uk/boris.motik/pubs/smh08HermiT.pdf (Accessed: 19 July 2025). - Wagner, R. and Becker, M.M. (2025) plasma-mds/LAMAS-4-IC: Initial release v.0.5. Available at:
https://zenodo.org/records/15055617 (Accessed: 19 July 2025). - Wagner, R., Becker, M.M., Balazinski, M., Schnabel, U., Below, H., Yordanova, K. and Waltemath, D. (2025) ‘LAMAS 4 IC – Laboratory approved metadata acquisition schemas for ion chromatography’, Journal of Chromatography B, 1256, article
124556 . Available at: 10.1016/j.jchromb.2025.124556 - Wagner, R., Waltemath, D., Yordanova, K. and Becker, M. (2024) ‘Towards FAIR data workflows for multidisciplinary science: ongoing endeavors and future perspectives in plasma technology’, SCITEPRESS – Science and Technology Publications, 1, pp. 471–477. Available at: 10.5220/0012808000003756
- Wang, W.M., Göpfert, T. and Stark, R. (2016) ‘Data management in collaborative interdisciplinary research projects—conclusions from the digitalization of research in sustainable manufacturing’, ISPRS International Journal of Geo-Information, 5(4), p.
41 . Available at: 10.3390/ijgi5040041 - Wilkinson, M.D., Dumontier, M., Aalbersberg, I.J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J.-W., Da Silva Santos, L.B., Bourne, P.E., Bouwman, J., Brookes, A.J., Clark, T., Crosas, M., Dillo, I., Dumon, O., Edmunds, S., Evelo, C.T., Finkers, R., Gonzalez-Beltran, A., Gray, A.J.G., Groth, P., Goble, C., Grethe, J.S., Heringa, J., ‘T Hoen, P.A.C., Hooft, R., Kuhn, T., Kok, R., Kok, J., Lusher, S.J., Martone, M.E., Mons, A., Packer, A.L., Persson, B., Rocca-Serra, P., Roos, M., Van Schaik, R., Sansone, S.-A., Schultes, E., Sengstag, T., Slater, T., Strawn, G., Swertz, M.A., Thompson, M., Van Der Lei, J., Van Mulligen, E., Veltrop, J., Waagmeester, A., Witenburg, P., Wolstencroft, K., Zhao, J. and Mons, B. (2016) ‘The FAIR Guiding Principles for scientific data management and stewardship’, Scientific Data, 3, article
160018 . Available at: 10.1038/sdata.2016.18 - Winter, H., Wagner, R., Ehlbeck, J., Urich, T. and Schnabel, U. (2024) ‘Deep impact: shifts of native cultivable microbial communities on fresh lettuce after treatment with plasma-treated water’, Foods, 13(2), p.
282 . Available at: 10.3390/foods13020282
DOI: https://doi.org/10.5334/dsj-2026-014 | Journal eISSN: 1683-1470
Language: English
Page range: 14 - 14
Submitted on: Aug 8, 2025
Accepted on: Mar 18, 2026
Published on: Apr 8, 2026
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
Keywords:
© 2026 Robert Wagner, Ron Henkel, Kristina Yordanova, Dagmar Waltemath, Markus M. Becker, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.