References
- Bradbury, P. J., Zhang, Z., Kroon, D. E., Casstevens, T. M., Ramdoss, Y., Buckler, E. S. (2007). TASSEL: Software for association mapping of complex traits in diverse samples. Bioinformatics, 23, 2633-2635.
- Caldwell, K. S., Russell, J. R., Langridge, P., Powell, W. (2006). Extreme population dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare. Genetics, 172, 557-567.
- Dreiseitl, A., Rashal, I. (2004). Powdery mildew resistance genes in Latvian barley varieties. Euphytica, 135, 325-332.
- Edwards, K., Johnstone, C., Thompson, C. (1991). A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucleic Acids Res., 19, 1349.
- Felsenstein, J. (1989). PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics, 5, 164-166.
- Fischbeck, G. (1992). Barley cultivar development in Europe—success in the past and possible changes in the future. In Munck, L. (ed.), Barley Genetics VI. Proceedings of the 6th International Barley Genetics Symposium (pp. 885-901). Helsinborg: Munksgaard International Publishers.
- Flint-Garcia, S. A., Thornsberry, J. M., Buckler, E. S. (2003). Structure of linkage disequilibrium in plants. Annu. Rev. Plant Biol., 54, 357-374.
- Halterman, D., Zhou, F., Wei, F., Wise, R., Schulze-Lefert, P. (2001). The MLA6 coiled-coil, NBS-LRR protein confers AvrMla6-dependent resistance specificity to Blumeria graminis f. sp. hordei in barley and wheat. Plant J., 25, 335-348.
- Halterman, D. A., Wei, F., Wise, R. P. (2003). Powdery mildew-induced Mla mRNAs are alternatively spliced and contain multiple upstream open reading frames. Plant Physiol., 131, 558-567.
- Jaccoud, D., Peng, K., Feinstein, D., Kilian, A. (2001). Diversity arrays: A solid state technology for sequence information independent genotyping. Nucleic Acids Res., 29, E25.
- Jensen, H. (1995). Presence of barley powdery mildew resistance gene Mla8 in some ‘Pallas’ near-isogenic barley lines. Barley Gen. Newslett., 24, 71-74.
- Kolodinska-Brantestam, A., von Bothmer, R., Dayteg, C., Rashal, I., Tuvesson, S., Weibull, J. (2007). Genetic diversity changes and relationships in spring barley (Hordeum vulgare L.) germplasm of Nordic and Baltic areas as shown by SSR markers. Genet. Res. Crop Evol., 54, 749-758.
- Kolodinska-Brantestam, A., von Bothmer, R., Dayteg, C., Rashal, I., Tuvesson, S., Weibull, J. (2004). Inter simple sequence repeat analysis of genetic diversity and relationships in cultivated barley of Nordic and Baltic origin. Hereditas, 141, 186-192.
- Mejlhede, N., Kyjovska, Z., Backes, G., Burhenne, K., Rasmussen, S. K., Jahoor, A. (2006). EcoTILLING for the identification of allelic variation in the powdery mildew resistance genes mlo and Mla of barley. Plant Breeding, 125, 461-467.
- Rostoks, N., Mudie, S., Cardle, L., Russell, J., Ramsay, L., Booth, A., Svensson, J. T., Wanamaker, S. I., Walia, H., Rodriguez, E. M., Hedley, P. E., Liu, H., Morris, J., Close, T. J., Marshall, D. F., Waugh, R. (2005). Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Mol. Genet. Genomics, 274, 515-527.
- Rostoks, N., Ramsay, L., MacKenzie, K., Cardle, L., Bhat, P. R., Roose, M. L., Svensson, J. T., Stein, N., Varshney, R. K., Marshall, D. F., Graner, A., Close, T. J., Waugh, R. (2006). Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proc. Natl. Acad. Sci. U S A, 103, 18656-18661.
- Rozas, J., Sanchez-DelBarrio, J. C., Messeguer, X., Rozas, R. (2003). DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496-2497.
- Russell, J., Booth, A., Fuller, J., Harrower, B., Hedley, P., Machray, G., Powell, W. (2004). A comparison of sequence-based polymorphism and haplotype content in transcribed and anonymous regions of the barley genome. Genome, 47, 389-398.
- Shen, Q. H., Zhou, F., Bieri, S., Haizel, T., Shirasu, K., Schulze-Lefert, P. (2003). Recognition specificity and RAR1/SGT1 dependence in barley Mla disease resistance genes to the powdery mildew fungus. Plant Cell, 15, 732-744.
- Staden, R. (1996). The Staden sequence analysis package. Mol. Biotechnol., 5, 233-241.
- Tanksley, S. D., McCouch, S. R. (1997). Seed banks and molecular maps: Unlocking genetic potential from the wild. Science, 277, 1063-1066.
- Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., Higgins, D. G. (1997). The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
- Tueryapina, R., Jensen, H., Rashal, I. (1996). Powdery mildew resistance genes in Baltic spring barley varieties and breeding lines. Barley Genetics Newsletter, 27, 18-21.
- von Bothmer, R., Sato, K., Knuepffer, H., van Hintum, T. (2003). Barley diversity - an introduction. In von Bothmer, R., van Hintum, T., Knuepffer, H., Sato, K. (eds.). Diversity in barley (Hordeum vulgare L.) (pp. 3-8). Amsterdam: Elsevier Science.
- Wang, W. Y., Barratt, B. J., Clayton, D. G., Todd, J. A. (2005). Genome-wide association studies: Theoretical and practical concerns. Nat. Rev. Genet., 6, 109-118.
- Wei, F., Wing, R. A., Wise, R. (2002). Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley. Plant Cell, 14, 1903-1917.
- Wei, F., Gobelman-Werner, K., Morroll, S. M., Kurth, J., Mao, L., Wing, R., Leister, D., Schulze-Lefert, P., Wise, R. P. (1999). The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of barley. Genetics, 153, 1929-1948.
- Weibull, J., Walther, U., Sato, K., Habekuss, A., Kopahnke, D., Proeseler, G. (2003). Diversity in resistance to biotic stresses. In von Bothmer, R., van Hintum, T., Knuepffer, H., Sato, K. (eds.). Diversity in barley (Hordeum vulgare L.) (pp. 143-178). Amsterdam: Elsevier Science.
- Wenzl, P., Li, H., Carling, J., Zhou, M., Raman, H., Edie, E., Hearnden, P., Maier, C., Xia, L., Caig, V., Ovesna, J., Cakir, M., Poulsen, D., Wang, J., Raman, R., Smith, K. P., Muehlbauer, G. J., Chalmers, K. J., Kleinhofs, A., Huttner, E., Kilian, A. (2006). A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits. BMC. Genomics, 7, 206.
- Wenzl, P., Carling, J., Kudrna, D., Jaccoud, D., Huttner, E., Kleinhofs, A., Kilian, A. (2004). Diversity Arrays Technology (DArT) for whole-genome profiling of barley. Proc. Natl. Acad. Sci. U S A, 101, 9915-9920.
- Zhou, F., Kurth, J., Wei, F., Elliott, C., Vale, G., Yahiaoui, N., Keller, B., Somerville, S., Wise, R., Schulze-Lefert, P. (2001). Cell-autonomous expression of barley Mla1 confers race-specific resistance to the powdery mildew fungus via a Rar1-independent signaling pathway. Plant Cell, 13, 337-350.