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Genetic testing for cancer predisposition syndromes in pediatric cancer patients: current practices and recommendations - a systematic review Cover

Genetic testing for cancer predisposition syndromes in pediatric cancer patients: current practices and recommendations - a systematic review

Open Access
|Jul 2026

Figures & Tables

FIGURE 1.

The study selection process.

FIGURE 2.

Schematic representation of the main characteristics of the studies included in our literature review.

Summary of studies included in the literature review

ARTICLENumber of patients included in the studyType of (primary) cancerGenes analyzedTesting techniqueProportion of positive for cancer predisposition syndrome
Sebastian M Waszak et al., 2018271022-retrospective cohorts (n=673)-four prospective studies (n=349)Medulloblastoma16 genes (APC, BRCA2, PALB2, PTCH1, SUFU, and TP53)WGS and WES from blood and tumour samples6%(retrospective cohort)5%(prospective cohort)
RabeaWageneret al., 202128160Leukemia, brain tumor, solid tumors, lymphomas, non-CNS embryonal tumor295 genesWES (patient and the respective parents)13.8%(6.9%PV +6.9%VUS with a high suspicion of association with carcinogenesis)
He Li et al., 202029615Rhabdomyosarcoma70 genesExome-sequencing7.3%
Zhaoming Wang, 2018303,006Leukemia, lymphoma, CNS, other solid tumors156 genesWGS (30-fold)5.8%
Ulrike A Friedrich et al., 202331139Leukemia, brain tumor, sarcoma, lymphoma, neuroblastoma, others433 genesNGS (child + parent): Exome sequencing10.1%
Carmen L Wilson et al., 2020322450Not specified156 genesWGS (mean coverage per sample 36.8X)11.8%
Anna Byrjalsen et al, 202033198Hematologic cancer, tumors of the central nervous system, solid tumors59 ACMG 'actionable' genes and 314 cancer genes.WGS47.5%carried pathogenic variants (PVs) in a CPS gene or had clinical features indicating CPS
Karin van der Tuin et al., 20243497nonmedullary thyroid cancer780 genesWGS13%
Christian P Kratz et al., 2022353975 (meta-analysis of 11 studies)brain tumors, non-brain solid tumors, hematological neoplasms10 genes: BRCA1, BRCA2, PALB2, ATM, CHEK2, MSH2, MSH6, MLH1, PMS2 and TP53Byrjalsen et al.WES2.99%
ReferenceIncluded in the main analysis?No. of participantsChang et al.WGS
Byrjalsen et al.Yes198Fiala et al.NGS-based panel
Chang et al.Yes59Mody et al.WES
Fiala et al.Yes751Newman et al.WGS
Mody et al.Yes102Oberg et al.WES
Newman et al.Yes299Parsons et al.WES
Oberg et al.Yes101Stedingk et al.Targeted sequencing
Parsons et al.Yes150Wagener et al.WES
Stedingk et al.Yes790Wong et al.WGS
Wagener et al.Yes160Zhang et al.WGS, WES
Wong et al.Yes247Akhavanfard et al.WES
Zhang et al.Yes1120Grobner et al.WGS, WES
Akhavanfard et al.No1507Kim et al.WGS, WES
Grobner et al.No914Li et al.WES
Kim et al.No394Mirabello et al.WES or targeted sequencies
Li et al.No615Waszak et al.WES, WGS
Mirabello et al.No1244
Waszak et al.No1022
Huma Q Rana et al., 20183638,938Patients with SGT or MGPT were included. Among them 30,987 (79.6%) have personal history of cancer, 7951 (20.4%) have not.TP53Single gene, multigene panels (comprehensive panels, breast panels, gyn panels, colon/GI panel, pancreas panel, kidney panel)0.2%vs 4.1%of individuals undergoing MGPT vs SGT
Katharina Daugs et al., 202537372Hematologic neoplasms, brain tumors, various solid entities25 selected HBOC-related genesWES7%
Liting Zhou et al., 202538499 survivors with SNs (cases) and 625 survivors without (matched controls)ALL, AML, HL, non-Hodgkin lymphoma, central nervous tumour, soft tissue sarcoma, Ewing sarcoma, osteosarcoma, retinoblastoma, neuroblastoma, Wilms tumor, germ cell tumor, other60 CPGsWESCases: 14.43% Control: 6.08%
Dianne E Sylvester et al., 201839a review of the literatureZhang et al.89 genesWES and WGS8.5%(95/1120)
Zhang et al.1120All
Parsons et al.150Solid tumoursParsons et al.an unspecifiedWES10.0%(15/150)
Mody et al.91AllMody et al.WES9.9%(9/91)
Oberg et al.90AllOberg et al.WES20.0%(18/90)
Chang et al.59Non-CNS solid tumoursChang et al.WES11.8%(7/59)
Kline et al.31CNS tumoursKline et al.510 genesWES35.5%(11/31)
Gaëlle Bougeard et al., 2015401,730Clinical suspicion of Li-Fraumeni syndrome.TP53Sanger sequencing; if no mutation was detected, deletion/duplication analysis with QMPSF415 TP53 mutation carriers were identified
Dianne E Sylvester et al., 20224176Childhood cancer patients with features suggestive of a genetic predisposition to cancer1048 genesExome sequencing25%

Overview of different guidelines/recommendations for genetic testing and counseling in children diagnosed with cancer

GUIDELINES RECOMMENDATIONS (author, year of publication)WHOM/WHEN TO TESTGENETIC COUNSELING/TESTING/TESTING TECHNIQUE
Genetic testing for childhood cancer predisposition syndromes: Controversies and recommendations from the SIOPE Host Genome Working Group meeting 2022 (Bakhuizen JJ, Bourdeaut F et al., 2024)42All children with cancer should undergo clinical screening for their risk of harboring a CPS.It is recommended to use targeted genetic testing based on clinical indication.Comprehensive CPS gene panels containing over 100–150 genes for all pediatric cancer should rather be used in research contexts than routine practice.Smaller actionable gene panels can be considered when they include genes that supporting diagnosis or have a direct impact on therapeutic management.
Paediatric cancers or tumours – when a genetic assessment is indicated (Cancer Institute NSW, 2020)43Family history criteria (child unaffected)An unaffected child may (being at risk of a known cancer predisposition condition) before age 18 years.- Condition: familial adenomatous polyposis, neurofibromatosis type 1, neurofibromatosis type 2, Gorlin, PTEN hamartoma/Cowden, MEN2, SDHx-related familial paraganglioma-phaeochromocytoma, juvenile polyposis, rhabdoid tumour predisposition syndrome, Peutz-Jeghers, Li-Fraumeni, von Hippel-Lindau disease- Gene: AIP, ALK or PHOX2B, APC, CDC73, CMMRD, DICER1, MEN1, CDKN1B, NF1, NF2, PTCH1, SUFU, PTEN, RB1, RET, SDHx-, SMAD4, SMARCA4, SMARCB1, STK11, TP53, VHLFamily history criteria (child unaffected)- predictive genetic testing before age 18 years
Family history criteria (child with cancer)A child with a cancer and one of the following family history characteristics:- Another relative with a cancer diagnosed under age 18 years- 1 or more first degree relative(s) (parent or sibling) with a cancer diagnosed under age 45 years- 2 or more first/second degree relatives in the same lineage with a cancer diagnosed under age 45 years- Parents are genetically related (i.e. consanguineous)Family history criteria (child with cancer)- considered for testing and/or referred to genetics
General criteria (child with cancer)A child with cancer and any one of the following features:- Growth abnormalities (e.g. short stature, microcephaly, macrocephaly, overgrowth)- Congenital anomalies (e.g. oral clefting, structural cardiac defects, microphthalmia, microcephaly, urinary tract anomalies)- Facial dysmorphism- Skin features (e.g. unusual pigmentation, multiple café-au-lait macules, UV hypersensitivity)- Haematological abnormalities not explained by the cancer diagnosis or treatment (e.g. thrombocytopenia, anaemia, pancytopenia)- Immunodeficiency not explained by the cancer diagnosis or treatment- Excessive treatment toxicity- Multiple primary cancers (unless the second malignancy is consistent in time and/or tissue type with those expected from their treatment regime); includes multiple or bilateral primary cancers of the same type- Unusual age of onset. Either a cancer usually diagnosed in adulthood (e.g. basal cell carcinoma, colorectal cancer, ovarian cancer, meningioma, renal cell carcinoma); or a cancer diagnosed in a prepubertal child, when the usual age at diagnosis is teenage or young adult yearsGeneral criteria (child with cancer)- should be considered for testing and/or referred to genetics unless there is a known alternative explanation for these additional features
Cancer/tumour criteriaA child with one of the following cancers/tumours*:(* This list is not all inclusive. There are other rare tumours/cancers where referral to a clinical genetics service is indicated. Clinical judgement should be used** 5 or more juvenile polyps or any number of Peutz-Jeghers polyps*** 3 or more under age 10 years; 5 or more over 10 years)- Adrenocortical carcinoma- Medulloblastoma1. WNT subtype without documented somatic CTNNB1 mutation2. SHH subtype under age 18 years- B acute lymphoblastic leukaemia (ALL) – low hypodiploid (32-39 chromosomes)- Myelodysplastic syndrome (MDS)- Cerebellar gangliocytoma (Lhermitte-Duclos disease)- Neuroblastoma (with other features suggestive of germline abnormality)- Choroid plexus carcinoma- Optic glioma- Colorectal polyps – hamartomatous**- Osteosarcoma- Colorectal polyps – multiple adenomatous or serrated/hyperplastic***- Ovarian Sertoli-Leydig cell tumour- Cystic nephroma- Paraganglioma or phaeochromocytoma- Desmoid-type fibromatosis (intra-abdominal/abdominal wall location)- Pineoblastoma- Endolymphatic sac tumour- Pituitary blastoma- Gastrointestinal stromal tumour (GIST)- Pleuropulmonary blastoma- Haemangioblastoma- Retinoblastoma- Hepatoblastoma- Rhabdomyosarcoma (anaplastic subtype at any age, or any subtype under age 3 years)- Infantile myofibromatosis- Schwannoma- Juvenile myelomonocytic leukaemia (JMML)- Small cell carcinoma of the ovary hypercalcaemic type (SCCOHT)- Malignant peripheral nerve sheath tumour- Subependymal giant cell tumour- Malignant rhabdoid tumour- Wilms tumour- Medullary thyroid cancerGeneralImmunohistochemistry or NGS of tumour DNA raises the possibility of a heritable pathogenic variant in a cancer predisposition gene e.g. CMMRD, Li Fraumeni and othersCancer/tumour criteria should be considered for testing and/or referred to genetics irrespective of other factors
Childhood cancer: Indication for genetic counseling?**updated Jongmans criteria[Jongmans et al., 2016](supporting document to Ripperger et al., 2017)44At least one criterion fulfilled - patient may benefit from genetic counselling:
1. Family history (3 generation pedigree)- ≥2 malignancies occurred in family members before age 18 years, including index patient- Parent or sibling with current or history of cancer before age 45 years- ≥2 first or second degree relatives in the same parental lineage with cancer before age 45 years- The parents of the child with cancer are consanguineous
2. One of the following Neoplasms was diagnosed:- Adrenocortical carcinoma / adenoma- ALL (low hypodiploid)- ALL (ring chromosome 21)- ALL (Robertsonian translocation 15;21)- ALL relapse (TP53 mutated)- AML (Monosomy 7)- Basal cell carcinoma- Botryoid rhabdomyosarcoma of the urogenital tract (fusion-negative)- Chondromesenchymal harmatoma- Choroid plexus carcinoma / tumor- Colorectal carcinoma- Cystic nephroma- Endolymphatic sac tumor- Fetal rhabdomyoma- Gastrointestinal stromal tumor- Glioma of the optic pathway (with signs of NF1)- Gonadoblastoma- Hemangioblastoma- Hepatoblastoma (CTNNB1 wildtype)- Hepatocellular carcinoma- Infantile myofibromatosis- Juvenile myelomonocytic leukemia- Keratocystic odontogenic tumor- Large cell calcifying Sertoli-cell-tumor- Malignant peripheral nerve sheath tumor- Medullary thyroid carcinoma- Medulloblastoma (SHH activated)- Medulloblastoma (WNT activated, CTNNB1 wildtype)- Medullary renal cell carcinoma- Medulloepithelioma- Melanoma- Meningioma- Myelodysplastic syndrome- Myeloproliferative neoplasms (except CML)- Myxoma- Neuroendocrine tumor- Paraganglioma / pheochromocytoma- Parathyroid carcinoma / adenoma- Pineoblastoma- Pituitary adenoma / tumor- Pituitary blastoma- Pleuropulmonary blastoma- Renal cell carcinoma- Retinoblastoma- Rhabdoid tumor- Rhabdomyosarcoma with diffuse anaplasia- Schwannoma- Schwannomatosis- Sertoli-Leydig cell tumor- Sex cord stromal tumor with annular tubules- Small cell carcin, of the ovary hypercalcemic type- Squamous cell carcinoma- Subependymal giant cell astrocytoma- Thyroid carcinoma (non-medullary)- Transient myeloproliferative disease- Other rare cancers or cancers that typically occur in adults, unusually early manifestation age
3. Genetic tumor analysis reveals defect suggesting a germline predisposition
4. A patient with ≥2 malignancies (e.g. secondary, bilateral, multifocal, metachronous)
5. A child with cancer and congenital or other anomaliesSign:- Congenital anomalies: Abnormal organs, skeletal anomalies, oral clefting, abnormal teeth, urogenital anomalies, abnormal hearing or vision, etc.- Facial dysmorphism- Mental impairment, developmental delay: Abnormal behavior, learning difficulties- Abnormal growth: Height, head circumference, birth weight, hemihyperplasia, growth chart- Skin anomalies: Abnormal pigmentation such as ≥2 café-au-lait spots, vascular lesions, hypersensitivity to sun, benign tumors, etc.- Hematological abnormalities (not explained by current cancer): Pancytopenia, anemia, thrombocytopenia, neutropenia, leukopenia, macrocytic erythrocytes- Immune deficiency: Frequency of infections, lymphopenia- Endocrine anomalies: Primary hyperparathyroidism, precocious puberty, gigantism/acromegaly, Cushing syndrome
6. The patient suffers from excessive toxicity of cancer therapy
The McGill Interactive Pediatric OncoGenetic Guidelines (MIPOGG) (Supplementary Online Content to Gouide C. et al. 2021)45Tumor-specific criteriaCharacteristic that increases the likelihood of having an underlying CPS in the setting of a specific tumor type. These questions can refer to one or more CPS types.A referral to genetics is recommended.
Universal criteriaCharacteristic that increases the likelihood of having an underlying CPS, independent of the tumor type. These questions do not refer to a specific CPS type.The universal criteria specify the existence of the following conditions:1. More than 1 primary tumor (asynchronous or synchronous)2. Dysmorphism or congenital anomaly that, according to the practitioner's judgment, may be related to the cancer3. Cancer occurring at age <50 years in a parent/sibling4. Cancer occurring at age <18 years in an aunt/uncle/first cousin/grandparent5. Same cancer type or same organ affected by cancer in a close relative6. Close relative with multiple primary tumors (excluding non-melanoma skin cancer) at age <60 years
Direct Referrals Included in MIPOGGMyelodysplastic syndromes including JMMLAdrenocortical carcinomaChondrosarcomaGISTLeiomyosarcomaLiposarcomaAtypical lipomatous tumor / well differentiated liposarcomaMPNST Breast tumorsPhyllodes tumorCardiac myxomaCardiac rhabdomyomaHepatoblastomaPleuropulmonary blastomaMedulloepitheliomaRetinoblastomaKeratocystic odontogenic tumorParathyroid tumorMedullary thyroid carcinomaOvarian SLCTOvarian sex cord-stromal tumor with annular tubulesCystic nephromaRenal cell carcinomaAnaplastic sarcoma of the kidneyMesotheliomaPheochromocytoma / ParagangliomaRhabdoid tumorAngiomyolipomaGardner fibroma / nuchal-type fibromaLymphangioleiomyomatosisNasal chondromesenchymal hamartomaSchwannoma / Acoustic neuromaFibrofolliculomaMucosal neuromaTrichodiscomaCarcinomas that typically present in adult age (e.g., breast, gastrointestinal, squamous cell carcinoma, pancreatic, uterine, vaginal, ovarian)Atypical teratoid rhabdoid tumorChoroid plexus carcinomaDysplastic cerebellar gangliocytomaEndolymphatic sack tumorHemangioblastomaMedulloepitheliomaMeningiomaPineoblastomaPituitary blastomaSchwannomaSubependymal giant cell tumor
SWEDISH APPROACHWhole genome sequencing becomes clinical routine for all cases of pediatric cancer (Karolinska university hospital, 2024)46Childhood Cancer in Sweden (European Partnership for Personalised Medicine - EP PerMed)47All children in Sweden diagnosed with cancer (since 2021)precision medicine diagnostics through WGS
All children in Sweden with cancer (since May 2024)WGS and whole-transcriptome sequencing (WTS) as part of the standard of care at diagnosis
Recognition of genetic predisposition in pediatric cancer patients: An easy-to-use selection tool (Jongmans et al., 2016)48fulfilling one or more of the criteria:may benefit from referral to a clinical geneticist.
1. Family history of the child with cancer- ≥2 malignancies at childhood age (≤18 years)- a first degree relative (parent or sibling) with cancer <45 years- ≥2 second degree relatives with cancer <45 years of age on the same side of the family- the parents of the child with cancer are related
2. One of tumors in childhood:- Adrenocortical carcinoma- Atypical teratoid rhabdoid tumor- Cerebellar gangliocytoma- Choroid plexus carcinoma- Endolymphatic sac tumors- Hemangioblastoma- Hepatoblastoma- JMML- Low hypodiploid ALL- Malignant peripheral nerve sheath tumor- Medullary thyroid carcinoma- Medulloblastoma- Optic glioma- Ovarian sertoli-leydig cell tumor- Pleuropulmonary blastoma- Pituitary blastoma- Pineoblastoma- Retinoblastoma- Schwannoma- Subependymal giant cell tumorsOrA cancer of adult age, i.e. colorectal cancer, ovarian cancer, basal cell carcinoma etc.
3. A child with two malignancies one of those with onset <18 years of age (unless the 2nd malignancy is consistent in time and/or tissue type with these expected from their treatment regimen).
4. A child with cancer and congenital anomalies or other specific symptoms
SignThink of
Congenital anomaliesOrgans, bones, oral clefting, teeth, eyes, ears, brain, urogenital anomalies, etc.
Facial dysmorphisms
Intellectual disability
Aberrant growthLength, head circumference, birth weight, asymmetric growth
Skin anomaliesAberrant pigmentation i.e. >2 café-au-lait spots, vascular skin changes, hypersensitivity for sunlight, multiple benign tumors of the skin
Hematological disordersPancytopenia, anemia, thrombocytopenia, neutropenia
5. A child with excessive treatment toxicity.
DOI: https://doi.org/10.2478/raon-2026-0031 | Journal eISSN: 1581-3207 | Journal ISSN: 1318-2099
Language: English
Submitted on: Mar 18, 2026
Accepted on: May 17, 2026
Published on: Jul 6, 2026
In partnership with: Paradigm Publishing Services

© 2026 Anja Urbas, Polona Usaj, Bostjan Seruga, Lorna Zadravec Zaletel, Mateja Krajc, published by Association of Radiology and Oncology
This work is licensed under the Creative Commons Attribution 4.0 License.

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