Phylogenetic characteristics of selected European huchen (Hucho hucho L.) broodstocks – implication for broodstock management

Kuciński, Marcin; Fopp-Bayat, Dorota

doi:10.2478/oandhs-2021-0005

References

Araki, H., Waples, R.S., Ardren, W.R. & Cooper, B. (2007). Effective population size of steelhead trout: influence of variance in reproductive success, hatchery programs, and genetic compensation between life-history forms. Mol. Ecol. 16(5): 953–966. DOI: 10.1111/j.1365-294X.2006.03206.x.
Open DOI Search in Google Scholar Back to article
Bernas, R., Burzynski, A., Debowski, P., Pocwierz-Kotus, A. & Wenne, R. (2014). Genetic diversity within sea trout population from an intensively stocked southern Baltic river, based on microsatellite DNA analysis. Fisheries Manag. Ecol. 21: 398–409. DOI: 10.1111/fme.12090.
Open DOI Search in Google Scholar Back to article
Bowcock, A.M., Ruiz-Linares, A., Tomfohrde, J., Minch, E., Kidd, J.R. et al. (1994). High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368(6470): 455–457. DOI: 10.1038/368455a0.
Open DOI Search in Google Scholar Back to article
Ditlecadet, D., Dufresne, F., Le Francois, N.R. & Blier, P.U. (2006). Applying microsatellites in two commercial strains of Arctic charr (Salvelinus alpinus): Potential for selective breeding program. Aquaculture 257(1): 37–43. DOI: 10.1016/j.aquaculture.2006.03.016.
Open DOI Search in Google Scholar Back to article
Do, C., Waples, R.S., Peel, D., Macbeth, G.M., Tillet, B.J. et al. (2013). NeEstimator V2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data. Mol. Ecol. Res. 14(1): 209–214. DOI: 10.1111/1755-0998.12157.
Open DOI Search in Google Scholar Back to article
Drywa, A., Pocwierz-Kotus, A., Was, A., Dobosz, S., Kent, M.P. et al. (2013). Genetyping of two populations of Southern Baltic Sea trout Salmo trutta m. trutta using an Atlantic salmon derived SNP-array. Mar. Genomics. 9: 25–32. DOI: 10.1016/j.margen.2012.08.001.
Open DOI Search in Google Scholar Back to article
Einum, S. & Fleming, I.A. (2001). Implication of stocking: ecological interaction between wild related salmonids. Nor. J. Fresh. Res. 75: 56–70.
Search in Google Scholar Back to article
Evanno, G., Regnaut, S. & Goudet, J. (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14: 2611–2620. DOI: 10.1111/j.1365-294X.2005.02553.x.
Open DOI Search in Google Scholar Back to article
Falush, D., Stephens, M. & Pritchard, J.K. (2003). Inference of population structure using multilocus genotypic data: linked loci and correlated allele frequencies. Genetics 164: 1567–1587.
Search in Google Scholar Back to article
FishBase 2015. Retrieved May 15, 2020 from http://www.fishbase.org.
Search in Google Scholar Back to article
Fopp-Bayat, D., Jankun, M., Kuźmiński, H. (2010). Genetic characterization of Polish cultured brook trout, Salvelinus fontinalis (Mitchill), based on microsatellite DNA analysis. Arch. Pol. Fisheries. 18: 93–99. DOI: 10.2478/v10086-010-0011-2.
Open DOI Search in Google Scholar Back to article
Frankham, R., Ballou, J.D., David, A. & Briscoe D.A. (2010). Introduction to Conservation Genetics, 2nd ed. Cambridge University Press, Cambridge.
Search in Google Scholar Back to article
Geist, J., Kolasha, M., Gum, B. & Kuehn, R. (2009). The importance of genetic cluster recognition for the conservation of migratory fish species: the example of the endangered European huchen Hucho hucho (L.). J. Fish. Biol. 75: 1063–1078. DOI: 10.1111/j.1095-8649.2009.02377.x.
Open DOI Search in Google Scholar Back to article
Geist, J. (2011). Integrative freshwater ecology and biodiversity conservation. Ecol. Indic. 11: 1507–1516. DOI: 10.1016/j.ecolind.2011.04.002.
Open DOI Search in Google Scholar Back to article
Glover, K.A., Taggart, J.B., Skaala, O. & Teale, A.J. (2004). A study of inadvertent domestication selection during start-feeding of brown trout families. J. Fish. Biol. 64: 1168–1178. DOI: 10.1111/j.0022-1112.2004.00376.x.
Open DOI Search in Google Scholar Back to article
Hansen, M.M. (2002). Estimating the long-term effects of stocking domesticated trout into wild brown trout (Salmo trutta) populations: an approach using microsatellite DNA analysis of historical and contemporary samples. Mol. Ecol. 11: 1003–1015. DOI: 10.1046/j.1365-294X.2002.01495.x.
Open DOI Search in Google Scholar Back to article
Hoarou, G., Boon, E., Jongma, D.N., Ferber, S., Palsson, J., van der Veer, H.W. et al. (2005). Low effective population size and evidence for inbreeding in an overexploited flatfish, plaice (Pleuronectes platessa L.). P. Roy. Soc. B-Biol. Sci. 272: 497–503. DOI: 10.1098/rspb.2004.2963.
Open DOI Search in Google Scholar Back to article
Huff, D.D., Miller, L.M., Chizinski, C.J. & Vondracek, B. (2011). Mixed-source reintroductions lead to outbreeding depression in second generation descendants of a native North American fish. Mol. Ecol. 20(20): 4246–4258. DOI: 10.1111/j.1365-294X.2011.05271.x.
Open DOI Search in Google Scholar Back to article
IUCN. (2015). Red list of Threatened Species. Retrieved June 15, 2015 from http://www.iucnredlist.org.
Search in Google Scholar Back to article
Kaczmarczyk, D., Luczyński, M. & Brzuzan, P. (2012). Genetic variation in three paddlefish (Polyodon spathula Walbaum) stocks based on microsatellite DNA analysis. Czech J. Anim. Sci. 57(8): 345–352.
Search in Google Scholar Back to article
Kalinowski, S.T., Manlove, K.R. & Taper, M.L. (2007). ONCOR: A Computer Program for Genetic Stock Identification. Bozeman, MT: Department of Ecology. Montana State University. Retrived June, 15, 2015 from http://www.montana.edu/kalinowski/Software/ONCOR.htm.
Search in Google Scholar Back to article
Kottelat, M. & Freyhof, J. (2007). Handbook of European freshwater fishes. Switzerland: Steven Simpson Books.
Search in Google Scholar Back to article
Kucinski, M., Fopp-Bayat, D., Liszewski, T., Svinger, V. Lebeda, I. et al. (2015a). Genetic analysis of four European huchen (Hucho hucho Linnaeus, 1758) broodstocks from Poland, Germany, Slovakia and Ukraine: implication for conservation. J. App. Genet. 56(4): 469–480. DOI: 10.1007/s13353-015-0274-9.
Open DOI Search in Google Scholar Back to article
Kucinski, M., Fopp-Bayat, D., Zivna, D., Liszewski, T., Svinger, V. et al. (2015b). Application of mtDNA markers for European huchen (Hucho hucho Linnaeus, 1758) management in Poland. Czech J.. Anim. Sci. 60: 564–569. DOI: 10.17221/8599-CJAS.
Open DOI Search in Google Scholar Back to article
Langella, O. (2002). Populations 1.2.28. Logiciel de génétique des populations. Laboratoire Populations, génétique et évolution, CNRS UPR 9034, Gif-sur-Yvette. Retrived May 15, 2020 from http://bioinformatics.org/~tryphon/populations/#ancre_bibliographie.
Search in Google Scholar Back to article
Maric, S., Razpet, A., Nikolic, V. & Simonovic, P. (2011). Genetic differentiation of European grayling (Thymallus thymallus) populations in Serbia, based on mitochondrial and nuclear DNA analyses. Genet. Sel. Evol. 42: 2. DOI: 10.1186/1297-9686-43-2.
Open DOI Search in Google Scholar Back to article
Nei, M., Tajima, F. & Tateno, Y. (1983). Accuracy of estimated phylogenetic trees from molecular data. J. Mol. Evol. 19: 153–170. DOI: 10.1007/BF02300753.
Open DOI Search in Google Scholar Back to article
Peakall, R. & Smouse, P.E. (2012). GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics 28: 2537–2539. DOI: 10.1093/bioinformatics/bts460.
Open DOI Search in Google Scholar Back to article
Piry, S., Alapetite, A., Cornuet, J.-M., Paetkau, D., Baudouin, L. & Estoup, A. (2004). GeneClass2: A Software for Genetic Assignment and First-Generation Migrant Detection. J. Hered. 95: 536–539. DOI: 10.1093/jhered/esh074.
Open DOI Search in Google Scholar Back to article
Pocwierz-Kotus, A., Bernas, R., Kent, M.P., Lien, S., Leliuna, E. et al. (2015). Restitution and genetic differentiation of salmon populations in the southern Baltic genetyped with the Atlantic salmon 7K SNP array. Genet. Sel. Evol. 47: 39. DOI: 10.1186/s12711-015-0121-9.
Open DOI Search in Google Scholar Back to article
Pritchard, J.K., Stephens, M. & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945–959.
Search in Google Scholar Back to article
Slatkin, M. (1995). A measure of population subdivision based on microsatellite allele frequencies. Genetics 139: 457–462.
Search in Google Scholar Back to article
Sonstebo, J.H. Borgstrom, R. & Heun, M. (2007). Genetic structure of brown trout (Salmo trutta L.) from the Hardangervidda mountain plateau (Norway) analyzed by microsatellite DNA: a basis for conservation guideline. Conserv. Genet. 8: 33–44. DOI: 10.1007/s10592-006-9145-6.
Open DOI Search in Google Scholar Back to article
Tringali, M.D. & Bert, T.M. (1998). Risk to genetic effective population size should be an important consideration in fish stock-enhancement programs. Bull. Mar. Sci. 62(2): 641–659.
Search in Google Scholar Back to article
Vaha, J.P., Erkinaro, J., Niemela, E. & Primmer, C.R. (2007). Life-history and habitat features influence the within-river genetic structure of Atlantic salmon. Mol. Ecol. 16: 2638–2658. DOI: 10.1111/j.1365-294X.2007.03329.x.
Open DOI Search in Google Scholar Back to article
Van Oosterhout, C., Hutchinson, W.F., Wills, D.P.M. & Shipley, P. (2004). Micro-Checker: software for identifying and correcting genotypes errors in microsatellite data. Mol. Ecol. Notes. 4(3): 535–538. DOI: 10.1111/j.1471-8286.2004.00684.x.
Open DOI Search in Google Scholar Back to article
Vrijenhoek, R.C. (1998). Conservation genetics of freshwater fish. J. Fish. Biol. 53: 394–412. DOI: 10.1111/j.1095-8649.1998.tb01039.x.
Open DOI Search in Google Scholar Back to article
Walsh, P.S., Metzger, D.A. & Higuchi, R. (1991). Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10: 506–513.
Search in Google Scholar Back to article
Wang, S., Hard, J.J. & Utter, F. (2002). Salmonid inbreeding: a review. Rev. Fish. Biol. Fisher. 11: 301–319. DOI: 10.1023/A:1021330500365.
Open DOI Search in Google Scholar Back to article
Waples, R.S. (1999). Dispelling some myths about hatcheries. Fisheries 24: 12–21. DOI: 10.1577/1548-8446(1999)024<0012:DSMAH>2.0.CO;2.
Open DOI Search in Google Scholar Back to article
Wedekind, C., Rudolfsen, G., Jacob, A., Urbach, D. & Muller, R. (2007). The genetic consequences of hatchery-induced competition in a salmonid. Biol. Conserv. 137: 180–188. DOI: 10.1016/j.biocon.2007.01.025.
Open DOI Search in Google Scholar Back to article
Weir, B.S. & Cockerman, C.C. (1984). Estimating F statistics for the analysis of population structure. Evolution 38: 1358–1370. DOI: 10.2307/2408641.
Open DOI Search in Google Scholar Back to article
Wenburg, J.K., Bentzen, P. & Foote, C.J. (1998). Microsatellite analysis of genetic population structure in an endangered salmonid: the coastal cutthroat trout (Oncorhynchus clarki). Mol. Ecol. 7: 733–749. DOI: 10.1046/j.1365-294x.1998.00386.x.
Open DOI Search in Google Scholar Back to article
Yang, X., Qian, L., Wu, H., Fan, Z. & Wang, C. (2012). Population differentiation, bottleneck and selection of Eurasian perch (Perca fluviatilis L.) at the Asian edge of its natural range. Biochem. Syst. Ecol. 40: 6–12. DOI: 10.1016/j.bse.2011.09.002.
Open DOI Search in Google Scholar Back to article

Phylogenetic characteristics of selected European huchen (Hucho hucho L.) broodstocks – implication for broodstock management

References

Paradigm

My account