Antimicrobial resistance pattern of miscellaneous isolates from two alpacas’ intestinal swabs and faeces
| Species | Sample source (animal) | Antimicrobial resistance profile |
|---|---|---|
| Moraxella osloensis | small intestine (2) | PG-ERY |
| Leuconostoc citreum | rectum (2) | PG |
| Corynebacterium diphtheriae | colon (1) | PG-DOX-OXY-ERY-SXT |
| Corynebacterium stationis | colon (1) | PG-DOX-OXY-ERY-SXT |
| Stenotrophomonas maltophilia | colon (1) | DOX-OXY-SXT |
Antimicrobial resistance pattern of Gram-negative Yersiniaceae isolates from two alpacas’ intestinal swabs and faeces
| Yersiniaceae rods | Sample source (animal) | Antimicrobial resistance profile | Antimicrobial resistance gene |
|---|---|---|---|
| Serratia liquefaciens | colon (2) | AMO-AMC-CLE-CF-COL-PB-DOX-TET-FLO | tetA |
| Serratia liquefaciens | small intestine (2) | CLE-CF-COL-PB-FLO | - |
| Serratia odorifera | faeces (2) | AMO-AMC-CLE-CF-COL-PB-FLO | - |
| Serratia odorifera | rectum (2) | CLE-CF-COL-PB-FLO | - |
| Serratia marcescens | faeces (1) | AMO-AMC-CF-COL-PB-DOX-TET-FLO | tetB |
Antimicrobial resistance pattern of Bacillus spp_ isolates from alpaca 2’s intestinal swabs and faeces
| Bacillus species | Sample source (animal) | Antimicrobial resistance profile |
|---|---|---|
| Bacillus altitudinis | small intestine | PG-ERY-SXT |
| Bacillus licheniformis | small intestine | PG-DOX-OXY-ERY-SXT |
| Bacillus licheniformis | small intestine | PG-SXT |
| Bacillus cereus | colon | PG-ERY-SXT |
| Bacillus cereus | colon | PG-ERY-SXT |
| Bacillus cecembensis | colon | PG-SXT |
| Bacillus flexus | colon | PG-ERY-SXT |
| Bacillus licheniformis | colon | PG-GEN-SXT |
| Bacillus licheniformis | colon | PG-ERY-SXT |
| Bacillus pumilus | colon | PG-ERY-SXT |
| Bacillus pumilus | colon | PG-ERY-SXT |
| Bacillus pumilus | colon | PG-ERY-SXT |
| Bacillus subtilis | colon | PG-ERY-SXT |
| Bacillus subtilis | colon | PG-ERY-SXT |
| Bacillus licheniformis | rectum | PG-DOX-OXY-ERY-SXT |
| Bacillus aeolinus | rectum | PG-DOX-OXY-ERY-SXT |
| Bacillus cereus | rectum | PG-SXT |
Antimicrobial resistance pattern of Gram-positive cocci isolates from two alpacas’ intestinal swabs and faeces
| Gram-positive cocci species | Sample source (animal) | Antimicrobial resistance profile | (T)ECOFF* |
|---|---|---|---|
| Enterococcus faecium | small intestine (1) | PG-BEN-NOR-DOX-TET | GEN-NEO-STR |
| Enterococcus hirae | small intestine (1) | PG-BEN-NOR-ERY | GEN-NEO-STR |
| Enterococcus hirae | colon (2) | PG-BEN-NOR-ERY-DOX-TET-FLO | GEN-NEO-STR |
| Enterococcus hirae | rectum (2) | PG-BEN-NOR-ERY-DOX-TET-FLO | GEN-NEO-STR |
| Enterococcus casseliflavus | colon (2) | PG-BEN-ERY-FLO | - |
| Enterococcus casseliflavus | rectum (2) | PG-BEN-ERY-FLO | - |
| Enterococcus gallinarum | rectum (1) | PG-BEN-DOX-TET-NOR-ERY | GEN-NEO-STR |
| Staphylococcus aureus | colon (1) | AMO-ENR | NEO-STR |
| Staphylococcus aureus | rectum (1) | AMO-ENR | NEO-STR |
| Staphylococcus pseudintermedius | rectum (2) | AMO-PG-BEN-ERY | TYL |
| Staphylococcus sciuri | colon (1) | AMO-PG-BEN | - |
| Staphylococcus sciuri | small intestine (2) | PG-BEN | - |
| Micrococcus luteus | rectum (2) | PG-BEN-ERY-CLI | - |
Antimicrobial resistance pattern of Gram-negative Enterobacteriaceae isolates from two alpacas’ intestinal swabs and faeces
| Enterobacteriaceae rods | Sample source (animal) | Antimicrobial resistance profile | Antimicrobial resistance gene |
|---|---|---|---|
| Citrobacter freundii | rectum (1) | AMP-AMO-AMC-CLE-CF-DOX-TET-FLO-SXT-ENR-NOR | tetA, sul1, floR |
| Citrobacter freundii | rectum (1) | AMP-AMO-AMC-CLE-CF-DOX-TET-FLO-SXT-ENR-NOR | tetA, sul1, floR |
| Citrobacter freundii | faeces (1) | AMP-AMO-AMC-CLE-CF-DOX-TET-FLO-SXT-ENR-NOR | tetA, sul1, floR |
| Citrobacter freundii | faeces (2) | AMP-AMO-AMC-CLE-CF-DOX-TET-FLO-SXT-NOR | aadA, tetA, sul1 |
| Citrobacter braakii | small intestine (1) | DOX-TET-FLO-SXT | floR |
| Enterobacter cloacae | colon (1) | AMP-AMO-CF-FLO-SXT | sul1, sul2, floR |
| Enterobacter cloacae | colon (1) | AMP-AMO-CF-FLO-SXT | sul1, sul2, floR |
| Enterobacter cloacae | colon (1) | AMO-CF-DOX-TET-ENR-NOR | tetA |
| Enterobacter cloacae | rectum (2) | AMP-AMO-CF-ENR-NOR | - |
| Enterobacter cloacae | faeces (2) | AMP-AMO-AMC-CLE-CF-SXT | sul1 |
| Enterobacter gergoviae | small intestine (2) | AMP-AMO-AMC-CLE-FLO | - |
| Enterobacter hormaechei | colon (2) | AMP-AMO-CLE-CF-FLO-SXT | sul1, dfrA1 |
| Enterobacter ludwigii | rectum (1) | AMP-AMO-AMC-CLE-CF-FLO | - |
| E. coli | colon (1) | AMP-AMO-AMC-CF-STR | aadA, strA/strB |