Fig. 1.

Primers sequences used in the study
Gene | Forward primer | Reverse primer | Expected product length (bp) |
---|---|---|---|
16srRNA | AGGGAGCTTGCCTTGGATTC | GGATGCAGTTCCCAGGTTGA | 557 |
gyrB | CCGGAGACCTTCAGCAACAT | TTGCCCATCTCCTGTTCCAC | 548 |
rpoD | AAAGAGTTGATCGCCCGAGG | TGCTGTCGTCGCTTTCTTCT | 583 |
rpoB | TTGTTTCTGTTGCTGCGTCG | GATTTCCTCTGGGCCAAGCT | 572 |
Results of BLAST used in bacterial isolate molecular identification
Sequence | Query coverage | Percent identity | Length | Taxon | Accession No. |
---|---|---|---|---|---|
rpoB | 99% | 91% | 6,375,262 | Pseudomonas aeruginosa | CP046602.1 |
rpoD | 97% | 99.81% | 6,375,262 | Pseudomonas aeruginosa | CP046602.1 |
gyrB | 99% | 99.6% | 6,375,262 | Pseudomonas aeruginosa | CP046602.1 |
16srRNA | 100% | 99.42% | 1,490 | Pseudomonas aeruginosa | PP112146.1 |