Remodelling of the healthy foal’s conjunctival microbiome in the first two months of life
References
- Bolyen E., Rideout J.R., Dillon M.R., Bokulich N.A., Abnet C.C., Al-Ghalith G.A., Alexander H., Alm E.J., Arumugam M., Asnicar F., Bai Y., Bisanz J.E., Bittinger K., Brejnrod A., Brislawn C.J., Brown C.T., Callahan B.J., Caraballo-Rodriguez A.M., Chase J., Cope E.K., Da Silva R., Diener C., Dorrestein P.C., Douglas G.M., Durall D.M., Duvallet C., Edwardson C.F., Ernst M., Estaki M., Fouquier J., Gauglitz J.M., Gibbons S.M., Gibson D.L., Gonzalez A., Gorlick K., Guo J., Hillmann B., Holmes S., Holste H., Huttenhower C., Huttley G.A., Janssen S., Jarmusch A.K., Jiang L., Kaehler B.D., Kang K.B., Keefe C.R., Keim P., Kelley S.T., Knights D., Koester I., Kościółek T., Kreps J., Langille M.G.I., Lee J., Ley R., Liu Y.X., Loftfield E., Lozupone C., Maher M., Marotz C., Martin B.D., McDonald D., McIver L.J., Melnik A.V., Metcalf J.L., Morgan S.C., Morton J.T., Naimey A.T., Navas-Molina J.A., Nothias L.F., Orchanian S.B., Pearson T., Peoples S.L., Petras D., Preuss M.L., Pruesse E., Rasmussen L.B., Rivers A., Robeson M.S., Rosenthal P., Segata N., Shaffer M., Shiffer A., Sinha R., Song S.J., Spear J.R., Swafford A.D., Thompson L.R., Torres P.J., Trinh P., Tripathi A., Turnbaugh P.J., Ul-Hasan S., van der Hooft J.J.J., Vargas F., Vázquez-Baeza Y., Vogtmann E., von Hippel M., Walters W., Wan Y., Wang M., Warren J., Weber K.C., Williamson C.H.D., Willis A.D., Xu Z.Z., Zaneveld J.R., Zhang Y., Zhu Q., Knight R., Caporaso J.G.: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol 2019, 37, 852–857, doi: 10.1038/s41587-019-0209-9.
- Chaucheyras-Durand F., Sacy A., Karges K., Apper E.: Gastro-Intestinal Microbiota in Equines and Its Role in Health and Disease: The Black Box Opens. Microorganisms 2022, 10, 2517, doi: 10.3390/microorganisms10122517.
- Chen Z., Xiang Z., Cui L., Quin X., Chen S., Jin H., Zou H.: Significantly different results in the ocular surface microbiome detected by tear paper and conjunctival swab. BMC Microbiol 2023, 23, 31, doi: 10.1186/s12866-023-02775-3.
- Dong Q., Brulc J.M., Iovieno A., Bates B., Garoutte A., Miller D., Revanna K.V., Gao X., Antonopoulos D.A., Slepak V.Z., Shestopalov V.I.: Diversity of bacteria at healthy human conjunctiva. Investig Ophthalmol Vis Sci 2011, 52, 5408–5413, doi: 10.1167/iovs.10-6939.
- Ferris M.J., Muyzer G., Ward D.M.: Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl Environ Microbiol 1996, 62, 340–346, doi: 10.1128/aem.62.2.340-346.1996.
- Gelatt K.N.: Congenital and acquired ophthalmic diseases in the foal. Anim Eye Res 1993, 12, 15–27, doi: 10.11254/jscvo.12.1-2_15.
- Gemensky-Metzler A.J., Wilkie D.A., Kowalski J.J., Schmall L.M., Willis A.M., Yamagata M.: Changes in bacterial and fungal ocular flora of clinically normal horses following experimental application of topical antimicrobial or antimicrobial-corticosteroid ophthalmic preparations. Am J Vet Res 2005, 66, 800–811, doi: 10.2460/ajvr.2005.66.800.
- Huber K., Overman J.:
Vicinamibacteraceae fam. nov., the first described family within the subdivision 6Acidobacteria . Int J Syst Evol Microbiol 2018, 68, 2331–2334, doi: 10.1099/ijsem.0.002841. - Jost L.: Entropy and diversity. OIKOS 2006, 113, 363–375, doi :10.1111/j.2006.0030-1299.14714.x.
- Keller R., Hendrix D.: Bacterial isolates and antimicrobial susceptibilities in equine bacterial ulcerative keratitis (1993–2004). Eq Vet J 2005, 37, 207–211, doi: 10.2746/0425164054530731.
- Kim H.B., Borewicz K., White B.A., Singer R.S., Sreevatsan S., Tu Z.J., Isaacson R.E.: Microbial shifts in the swine distal gut in response to the treatment with antimicrobial growth promoter, tylosin. PNAS 2012, 109, 15485–15490, doi: 10.1073/pnas.1205147109.
- LaFrentz S., Abarca E., Mohammed H.H., Cuming R., Arias C.R.: Characterization of the normal equine conjunctival bacterial community using culture-independent methods. Vet Ophthalmol 2020, 23, 480–488, doi: 10.1111/vop.12743.
- Legaria M.C., Nastro M., Camporro J., Heger J., Barberis C., Stecher D., Rodriguez C.H., Vay C.A.:
Peptostreptococcus anaerobius : Pathogenicity, identification, and antimicrobial susceptibility. Review of monobacterial infections and addition of a case of urinary tract infection directly identified from a urine sample by MALDI-TOF MS. Anaerobe 2021, 72, 102461, doi: 10.1016/j.anaerobe.2021.102461. - Manderwad G.P., Kodiganti M., Ali M.J.:
Cardiobacterium hominis -induced acute dacryocystitis and lacrimal abscess. Indian J Ophthalmol 2014, 62, 495–497, doi: 10.4103/0301-4738.116461. - Miller D., Iovieno A.: The role of microbial flora on the ocular surface. Curr Opin Allergy Clin Immunol 2009, 9, 466–470, doi: 10.1097/ACI.0b013e3283303e1b.
- Moore C.P., Heller N., Majors L.J., Whitley R.D., Burgess E.C., Weber J.: Prevalence of ocular microorganisms in hospitalized and stabled horses. Am J Vet Res 1988, 49, 773–777.
- Moore E.R.B., Mihaylova S.A., Gomila M.: The Family
Cardiobacteriaceae . In:The Prokaryotes , edited by E. Rosenberg, E.F. DeLong, S. Lory, E. Stackebrandt, F. Thompson, Springer, Berlin, Germany, 2014, doi: 10.1007/978-3-642-38922-1_294. - Nardi S., Nuti M., Nocera I., Sgorbini M., Marmorini P., Barsotti G.: Lacrimal secretion variation and menace response appearance in healthy standardbred foals from birth to four weeks of age. J Eq Vet Sci 2022, 116, 104050, doi: 10.1016/j.jevs.2022.104050.
- Neu A., Allen E., Roy K.: Defining and quantifying a core microbiome: Challenges and prospects. PNAS 2021, 118, e2104429118, doi: 10.1073/pnas.2104429118.
- Nguyen V.G., Kim C.U., Do H.-Q., Shin S., Jang K.C., Park Y.H., Park B.K., Chung H.C.: Characteristics of
Aerococcus viridans isolated from porcine fetuses in Korean farms. Vet Med Sci 2021, 7, 1325–1331, doi: 10.1002/vms3.456. - Oren A.: The Family
Xanthobacteraceae . In:The Prokaryotes , edited by E. Rosenberg, E.F. DeLong, S. Lory, E. Stackebrandt, F. Thompson, Springer, Berlin, Germany, 2014, doi: 10.1007/978-3-642-30197-1_258. - Pan Z., Ma Y., Ma J., Dong W., Yao H.: Acute meningitis of piglets and mice caused by co-infected with
Streptococcus suis andAerococcus viridans . Microb Pathog 2017, 106, 60–64, doi: 10.1016/j.micpath.2016.10.024. - Petrillo F., Pignataro D., Lavano M.A., Santella B., Volliero V., Zannella C., Astarita C., Gagliano C., Franci G., Avitabile T., Galdiero M.: Current evidence on the ocular surface microbiota and related diseases. Microorganisms 2020, 8, 1033, doi: 10.3390/microorganisms8071033.
- Quast C., Pruesse E., Yilmaz P., Gerken J., Schweer T., Yarza P., Peplies J., Glöckner F.O.: The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucl Acid Res 2012, 41, D590–D596, doi: 10.1093/nar/gks1219.
- Rummelt V., Boltze H., Jünemann A., Röllinghof M., Naumann G.: Persistence and transient microbial colonisation of the conjunctiva before planned intraocular surgery (in German). Klin Monbl Augenheilkd 1992, 201, 231–233, doi: 10.1055/s-2008-1045900.
- Saishu N., Morimoto K., Yamasato H., Ozaki H., Murase T.: Characterization of
Aerococcus viridans isolated from milk samples from cows with mastitis and manure samples. J Vet Med Sci 2015, 77, 1037–1042, doi: 10.1292/jvms.15-0100. - Santibáñez R., Lara F., Barros T.M., Mardones E., Cuadra F., Thomson P.: Ocular microbiome in a group of clinically healthy horses. Animals 2022, 12, 943, doi: 10.3390/ani12080943.
- Satora M., Magdziarz M., Rząsa A., Rypuła K., Płoneczka-Janeczko K.: Insight into the intestinal microbiome of farrowing sows following the administration of garlic (
Allium sativum ) extract and probiotic bacteria cultures under farming conditions. BMC Vet Res 2020, 16, 422, doi: 10.1186/s12917-020-02659-y. - Scott E.M., Arnold C., Dowell S., Suchodolski J.S.: Evaluation of the bacterial ocular surface microbiome in clinically normal horses before and after treatment with topical neomycin-polymyxin-bacitracin. PLoS One 2019, 14, e0214877, doi: 10.1371/journal.pone.0214877.
- Shade A., Handelsman J.: Beyond the Venn diagram. The hunt for a core microbiome. Environ Microbiol 2012, 14, 4–12, doi: 10.1111/j.1462-2920.2011.02585.x.
- Slobodkin A.: The Family
Peptostreptococcaceae . In:The Prokaryotes , edited by E. Rosenberg, E.F. DeLong, S. Lory, E. Stackebrandt, F. Thompson, Springer, Berlin, Germany, 2014, doi: 10.1007/978-3-642-30120-9_217. - Stackebrandt E.: The Family
Aerococcaceae . In:The Prokaryotes , edited by E. Rosenberg, E.F. DeLong, S. Lory, E. Stackebrandt, F. Thompson. Springer, Berlin, Germany, 2014. doi: 10.1007/978-3-642-30120-9_349. - St Leger A.J., Caspi R.R.: Visions of eye commensals: The known and the unknown about how the microbiome affects eye disease. Bioessays 2018, 40, 1800046, doi: 10.1002/bies.201800046.
- Verbanic S., Kim C.Y., Deacon J.M., Chen I.A.: Improved single-swab sample preparation for recovering bacterial and phage DNA from human skin and wound microbiomes. BMC Microbiol 2019, 19, 214, doi: 10.1186/s12866-019-1586-4.
- Walsh M.L., Meason-Smith C., Arnold C., Suchodolski J.S., Scott E.M.: Evaluation of the ocular surface mycobiota in clinically normal horses. PLoS One 2021, 16, e0246537, doi: 10.1371/journal.pone.0246537.
- Żak A., Siwińska A., Słowikowska M., Borowicz H., Płoneczka-Janeczko K., Chorbiński P., Niedźwiedź A.: Conjunctival aerobic bacterial flora in healthy Silesian foals and adult horses in Poland. BMC Vet Res 2018, 14, 261, doi: 10.1186/s12917-018-1598-6.
DOI: https://doi.org/10.2478/jvetres-2025-0001 | Journal eISSN: 2450-8608
Language: English
Page range: 131 - 140
Submitted on: May 29, 2024
Accepted on: Jan 20, 2025
Published on: Jan 31, 2025
Published by: National Veterinary Research Institute in Pulawy
In partnership with: Paradigm Publishing Services
Publication frequency: 4 times per year
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© 2025 Katarzyna Płoneczka-Janeczko, Eve Armstrong, Marta Siemieniuch-Tartanus, Marcin Magdziarz, published by National Veterinary Research Institute in Pulawy
This work is licensed under the Creative Commons Attribution 4.0 License.