Analysis of Root System Architecture Affected by Swarming Behavior
By:
References
- Araya T., Kubo T., von Wirén N., Takahashi H. 2016. Statistical modeling of nitrogen-dependent modulation of root system architecture in Arabidopsis thaliana. Journal of Integrative Plant Biology 58(3): 254–265. DOI: 10.1111/jipb.12433.
- Barlow P.W., Fisahn J. 2013. Swarms, swarming and entanglements of fungal hyphae and of plant roots. Communicative and Integrative Biology 6(5); e25299, 16 p. DOI: 10.4161/cib.25299.
- Cassab G.I., Eapen D., Campos M.E. 2013. Root hydrotropism: An update. American Journal of Botany 100(1): 14–24. DOI: 10.3732/ajb.1200306.
- Ciszak M., Comparini D., Mazzolai B., Baluska F., Arecchi F.T., Vicsek T., Mancuso S. 2012. Swarming behavior in plant roots. PLoS One 7(1); e29759, 7 p. DOI: 10.1371/journal.pone.0029759.
- Couzin I. 2007. Collective minds. Nature 445(7129): 715. DOI: 10.1038/445715a.
- Couzin I.D., Krause J., Franks N.R., Levin S.A. 2005. Effective leadership and decision-making in animal groups on the move. Nature 433(7025): 513–516. DOI: 10.1038/nature03236.
- Diggle A.J. 1988. ROOTMAP – a model in three-dimensional coordinates of the growth and structure of fibrous root systems. Plant and Soil 105(2): 169–178. DOI: 10.1007/bf02376780.
- Dunbabin V.M., Postma J.A., Schnepf A., Pagès L., Javaux M., Wu L. et al. 2013. Modelling root–soil interactions using three-dimensional models of root growth, architecture and function. Plant and Soil 372(1–2): 93–124. DOI: 10.1007/s11104-013-1769-y.
- Giehl R.F.H., Lima J.E., von Wirén N. 2012. Localized iron supply triggers lateral root elongation in Arabidopsis by altering the AUX1-mediated auxin distribution. Plant Cell 24(1): 33–49. DOI: 10.1105/tpc.111.092973.
- Gilroy S. 2008. Plant tropisms. Current Biology 18(7): R275–R277. DOI: 10.1016/j.cub.2008.02.033.
- Gleeson S.K., Good R.E. 2010. Root growth response to water and nutrients in the New Jersey Pinelands. Canadian Journal of Forest Research 40(1): 167–172. DOI: 10.1139/x09-180.
- Henke M., Sarlikioti V., Kurth W., Buck-Sorlin G.H., Pagès L. 2014. Exploring root developmental plasticity to nitrogen with a three-dimensional architectural model. Plant and Soil 385(1–2): 49–62. DOI: 10.1007/s11104-014-2221-7.
- Hodge A. 2004. The plastic plant: root responses to heterogeneous supplies of nutrients. New Phytologist 162(1): 9–24. DOI: 10.1111/j.1469-8137.2004.01015.x.
- Kiba T., Krapp A. 2016. Plant nitrogen acquisition under low availability: Regulation of uptake and root architecture. Plant and Cell Physiology 57(4): 707–714. DOI: 10.1093/pcp/pcw052.
- Li S., Liu X., Wang M., Yu W. 2016. Exploring root plasticity to resource patches based on swarm behavior. Acta Physiologiae Plantarum 38(8): 192. DOI: 10.1007/s11738-016-2227-2.
- Lucas M., Guédon Y., Jay-Allemand C., Godin C., Laplaze L. 2008. An auxin transport-based model of root branching in Arabidopsis thaliana. PLoS One 3(11); e3673, 13 p. DOI: 10.1371/journal.pone.0003673.
- Manske G.G.B., Ortiz-Monasterio J.I., Van Ginkel M., González R.M., Rajaram S., Molina E., Vlek P.L.G. 2000. Traits associated with improved P-uptake efficiency in CIMMYT's semidwarf spring bread wheat grown on an acid Andisol in Mexico. Plant and Soil 221(2): 189–204. DOI: 10.1023/a:1004727201568.
- Matos T., Cruz C., Correia L. 2014. Root growth model based on swarm intelligence. In: Morte A., Varma A. (Eds.), Root Engineering. Soil Biology 40: 57–73. DOI: 10.1007/978-3-642-54276-3_4.
- McCleery W.T., Mohd-Radzman N.A., Grieneisen V.A. 2017. Root branching plasticity: collective decision-making results from local and global signalling. Current Opinion in Cell Biology 44: 51–58. DOI: 10.1016/j.ceb.2017.03.001.
- Pagès L. 2011. Links between root developmental traits and foraging performance. Plant, Cell and Environment 34: 1749–1760. DOI: 10.1111/j.1365-3040.2011.02371.x.
- Pagès L., Moreau D., Sarlikioti V., Boukcim H., Nguyen C. 2012. ArchiSimple: a parsimonious model of the root system architecture. IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, pp. 297–303. DOI: 10.1109/pma.2012.6524849.
- Pagès L., Bécel C., Boukcim H., Moreau D., Nguyen C., Voisin A.-S. 2014. Calibration and evaluation of ArchiSimple, a simple model of root system architecture. Ecological Modelling 290: 76–84. DOI: 10.1016/j.ecolmodel.2013.11.014.
- Postma J.A., Kuppe C., Owen M.R., Mellor N., Griffiths M., Bennett M.J. et al. 2017. OpenSimRoot: widening the scope and application of root architectural models. New Phytologist 215(3): 1274–1286. DOI: 10.1111/nph.14641.
- Rellán-Álvarez R., Lobet G., Dinneny J.R. 2016. Environmental control of root system biology. Annual Review of Plant Biology 67(1): 619–642. DOI: 10.1146/annurev-arplant-043015-111848.
- Schnepf A., Leitner D., Landl M., Lobet G., Mai T.H., Morandage S. et al. 2018. CRootBox: A Structural-Functional Modelling Framework For Root Systems. Annals of Botany 121(5): 1033–1053. DOI: 10.1093/aob/mcx221.
- Tian H., De Smet I., Ding Z. 2014. Shaping a root system: regulating lateral versus primary root growth. Trends in Plant Science 19(7): 426–431. DOI: 10.1016/j.tplants.2014.01.007.
- Zhang H., Forde B.G. 1998. An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture. Science 279(5349): 407–409. DOI: 10.1126/science.279.5349.407.
- Zhu J., Kaeppler S.M., Lynch J.P. 2005. Mapping of QTLs for lateral root branching and length in maize (Zea mays L.) under differential phosphorus supply. Theoretical and Applied Genetics 111(4): 688–695. DOI: 10.1007/s00122-005-2051-3.
Language: English
Page range: 1 - 12
Submitted on: Jan 1, 2020
Accepted on: Mar 1, 2020
Published on: Jun 30, 2020
Published by: National Institute of Horticultural Research
In partnership with: Paradigm Publishing Services
Publication frequency: 2 issues per year
Keywords:
Related subjects:
© 2020 Songyang Li, Wenqi Yu, Xiaodong Liu, Miao Wang, published by National Institute of Horticultural Research
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.