Quality measures and descriptive statistics for our genome assembly and annotation of Parelaphostrongylus tenuis_
| Assembly/Annotation Features | P. tenuis Genome |
|---|---|
| Scaffolds (no.) | 7,285 |
| N50 (bp) | 158,736 |
| N75 (bp) | 73,872 |
| Total length (bp) | 491,304,140 |
| Longest scaffold (bp) | 1,543,493 |
| GC content (%) | 40.07 |
| Complete Genome BUSCOs (no./%) | 2,818/90 |
| Complete Genome single-copy BUSCOs (no./%) | 2724/87 |
| Complete and duplicated Genome BUSCOs (no./%) | 94/3 |
| Fragmented Genome BUSCOs (no./%) | 54/1 |
| Missing Genome BUSCOs (no./%) | 259/8.3 |
| Protein-coding genes (no.) | 29,657 |
| Non-coding tRNA genes (no.) | 9,623 |
| Complete Proteome BUSCOs (no./%) | 2,224/71 |
| Fragmented Proteome BUSCOs (no./%) | 54/7.1 |
| Missing Proteome BUSCOs (no./%) | 259/21.9 |
A comparison of descriptive statistics of the Stronglyid family genomes available in WormBase ParaSite_
| Species | Author/Source | Accession no. | Family | Number of Contigs or Scaffolds | Genome Size | N50 | Largest Contig or Scaffold | GC content (%) |
|---|---|---|---|---|---|---|---|---|
| Parelaphostronglus tenuis | Our genome (University of Minnesota) | GCA_019055375.1 | Protostrongylidae | 7,414 | 491.3 Mb | 158.7 kb | 1.5 Mb | 40.1 |
| Ancyclostoma caninum | McDonnell Genome Institute | GCA_003336725.1 | Ancylostomatidae | 25,335 | 465.7 Mb | 256.7 kb | 5.5 Mb | 42.5 |
| Ancylostoma ceylanicum | Cornell University | GCA_000688135.1 | Ancylostomatidae | 1,736 | 313.1 Mb | 668.4 kb | 4.8 Mb | 43.4 |
| Ancylostoma duodenale | McDonnell Genome Institute | GCA_000816745.1 | Ancylostomatidae | 100,268 | 332.9 Mb | 10.1 kb | 0.3 Mb | 42.5 |
| Angiostrongylus cantonensis | Sun Yat-sen University | GCA_009735665.1 | Angiostrongylidae | 35,378 | 293.3 Mb | 860.8 kb | 4.7 Mb | 41.5 |
| Angiostrongylus costaricensis | Wellcome Sanger Institute | GCA_900624975.1 | Angiostrongylidae | 6,384 | 262.8 Mb | 112.5 kb | 0.8 Mb | 41.2 |
| Angiostrongylus vasorum | University of Zurich | GCA_018806985.1 | Angiostrongylidae | 468 | 279.9 Mb | 1,700 kb | 7.3 Mb | 41.6 |
| Cylicostephanus goldi | Wellcome Sanger Institute | GCA_900617965.1 | Cyathostominae | 154,509 | 173.4 Mb | 1.2 kb | 0.02 Mb | 40.2 |
| Dictyocaulus viviparus | The Genome Institute | GCA_000816705.1 | Dictyocaulidae | 7,157 | 161 Mb | 225.7 kb | 2.2 Mb | 34.5 |
| Haemonchus contortus | Wellcome Sanger Institute | GCA_000469685.2 | Trichostrongylidae | 191 | 283.4 Mb | 47,400 kb | 51.8 Mb | 43.1 |
| Haemonchus placei | Wellcome Sanger Institute | GCA_900617895.1 | Trichostrongylidae | 24,923 | 259.1 Mb | 37.6 kb | 0.3 Mb | 42.8 |
| Heligmosomoides polygyrus | Wellcome Sanger Institute | GCA_900618505.1 | Heligmosomidae | 44,726 | 560.7 Mb | 35.8 kb | 0.4 Mb | 42.0 |
| Heterorhabditis bacteriophora | McDonnell Genome Institute | GCA_000223415.1 | Rhabditidae | 1,240 | 77 Mb | 102 kb | 2.2 Mb | 33.3 |
| Necator americanus | McDonnell Research Institute | GCF_000507365.1 | Ancylostomatidae | 11,864 | 244.1 Mb | 211.9 kb | 1.9 Mb | 40.2 |
| Nippostrongylus brasiliensis | Wellcome Sanger Institute | GCA_900618405.1 | Heligosomidae | 44,362 | 294.4 Mb | 33.5 kb | 0.4 Mb | 42.7 |
| Oesophagostomum dentatum | McDonnell Genome Institue | GCA_00079755.1 | Chabertiidae | 64,255 | 443 Mb | 26.5 kb | 1.6 Mb | 41.4 |
| Strongylus vulgaris | Wellcome Sanger Institute | GCA_900624965.1 | Strongylidae | 167,310 | 291.1 Mb | 2.4 kb | 0.09 Mb | 37.9 |
| Teladorsagia circumcincta | McDonnell Genome Institute | GCA_002352805.1 | Trichostrongylidae | 81,730 | 700.6 Mb | 47.1 kb | 1.5 Mb | 44.5 |