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Multigene Sequence-Based and Phenotypic Characterization Reveals the Occurrence of a Novel Entomopathogenic Nematode Species, Steinernema anantnagense n. sp. Cover

Multigene Sequence-Based and Phenotypic Characterization Reveals the Occurrence of a Novel Entomopathogenic Nematode Species, Steinernema anantnagense n. sp.

Open Access
|Jul 2023

Figures & Tables

Figure 1:

Line drawings of first- and second-generation adults and infective juveniles of Steinernema anantnagense n. sp. (A–C) First-generation female: (A) Anterior end; (B) Neck region; (C) Posterior end. (D–F) First-generation male: D) Anterior end; (E) Neck region; (F) Posterior end. (G–I) Second-generation female: (G) Anterior end; (H) Neck region; (I) Posterior end. (J–L) Second-generation male: (J) Anterior end; (K) Neck region; (L) Posterior end. (M–O) Infective juvenile: (M) Anterior end; (N) Neck; (O) Posterior end.

Figure 2:

Light microscope micrographs of first-generation adults and IJ of Steinernema anantnagense n. sp. (A–C) Female: (A) Anterior end; (B) Neck region (arrow pointing to the excretory pore); (C) Posterior end. (D–F) Male: (D) Anterior end; (E) Neck region (arrow pointing to the excretory pore); (F) Posterior end (arrow pointing to the mid-ventral genital papillae). (G–I) Infective juvenile: (G) Anterior end; (H) Neck region (black arrow pointing to the excretory pore, white arrow pointing to the bacteria sac); (I) Posterior end.

Figure 3:

Light microscope micrographs of second-generation adults and IJ of Steinernema anantnagense n. sp. (A–C) Second-generation female: (A) Anterior end; (B) Neck region; (C) Posterior end. (D–F) Second-generation male: D) Anterior end; (E) Neck region; (F) Posterior end (arrow pointing to the mid-ventral genital papillae). (G) Entire infective juvenile (arrow pointing to the bacteria sac).

Figure 4:

Scanning electron microscope micrographs of first-generation adults of Steinernema anantnagense n. sp. (A, B) Lip region of female in frontal and lateral view, respectively (arrows pointing to the amphids); (C) Excretory pore of female; (D) Vulva in ventral view; (E) Female posterior end (arrow pointing to the anus). (F–H) Male posterior end in lateral, ventral and subventral view, respectively (GP: genital papilla, MP: mid-ventral papilla, ph: phasmid). (I, J) Lip region of IJ in frontal and lateral view, respectively (arrows pointing to the amphids); (K) Excretory pore of IJ; (L) Lateral field of IJ; (M, N) Posterior end of IJ in ventral and lateral view, respectively (arrows pointing to the phasmids).

Figure 5:

Scanning electron microscope micrographs of second-generation adults and IJ of Steinernema anantnagense n. sp. (A, B) Lip region of female in frontal and lateral view, respectively (arrows pointing to the amphids); (C) Excretory pore of female; (D) Vulva in ventral view; (E, F) Female posterior end in lateral and ventral view, respectively (arrow pointing to the anus). (G, H) Lip region of male in frontal and lateral view, respectively (arrows pointing to the amphids); (I) Male excretory pore; (J–L) Male posterior end in lateral, ventral and subventral view, respectively (GP: genital papilla, MP: mid-ventral papilla, ph: phasmid).

Table 1.

Morphometrics of the IJs and adult generations of Steinernema anantnagense n. sp. (Steiner_7). All characters are in µm (except n, ratios and percentages) and given as mean ± s.d. (range).

CharactersFirst GenerationSecond GenerationInfective Juveniles (paratypes)
Male (holotype)Male (paratypes)Female (paratypes)Male (paratypes)Female (paratypes)
n12020202020
Body length (L)12791618 ± 246 (1223–1899)3765 ± 441 (2327–4872)1068 ± 76 (899–1168)2081 ± 200 (1761–2437)789 ± 35 (749–834)
a (L/BD)6.68.3 ± 1.1 (6.4–9.8)23 ± 1.2 (17–29)19 ± 2.6 (15.1–25.3)14.7 ± 1.5 (12.1–17.4)22 ± 1.9 (19–24)
b (L/NL)7.09.2 ± 1.4 (7.0–11.3)17.0 ± 2.4 (13–21)7.1 ± 0.6 (5.9–8.2)11.0 ± 1.0 (9.6–13.5)6.0 ± 0.4 (5.5–6.7)
c (L/T)3549 ± 9.0 (34–64)100 ± 18 (61–122)43 ± 5.8 (31–52)54 ± 6.6 (43–67)13.8 ± 1.8 (12.2–16.4)
c’ (T/ABW)1.21.1 ± 0.2 (0.8–1.6)0.7 ± 0.1 (0.5–0.8)0.9 ± 0.2 (0.6–1.4)1.0 ± 0.1 (0.8–1.3)1.8 ± 0.2 (1.6–2.1)
V (VA/L×100)53 ± 1.7 (50–58)53 ± 1.7 (50–57)
Max. body diam. (MBD)193194 ±11.3 (167–211)434 ± 30 (314–409)57 ± 7.3 (42–63)143 ± 16 (123–173)37 ± 3.6 (32–42)
Lip region width10.210.1 ± 1.9 (8.2–12.2)14.4 ± 1.9 (11.1–18.3)8.4 ± 1.6 (6.1–12.1)11.4 ± 1.7 (8.9–14.6)4.6 ± 2.0 (3.7–5.8)
Stoma length12.313.8 ± 1.6 (10.1–16.9)16.4 ± 2.4 (12.4–22.1)11.7 ± 1.1 (10.1–14.1)14.1 ± 2.3 (11.1–18.1)10.7 ± 2.0 (8.6–13.8)
Procorpus length6657 ± 4.1 (51–66)65 ± 6.0 (55–76)47 ± 3.9 (41–53)54 ± 3.8 (49–65)43 ± 5.4 (37–52)
Metacorpus length3334 ± 1.7 (30–36)44 ± 4.6 (38–50)30 ± 2.4 (25–35)37 ± 2.4 (33–43)26 ± 2.7 (23–29)
Isthmus length4042 ± 4.0 (37–50)53 ± 6.4 (45–68)37 ± 1.5 (35–40)49 ± 3.7 (43–55)36 ± 2.8 (31–39)
Bulb length (BL)3130 ± 2.2 (25–35)43 ± 4.5 (33–50)25 ± 2.7 (21–30)35 ± 2.9 (30–39)17 ± 1.8 (16–20)
Bulb width (EBW)2625 ± 1.6 (21–27)35 ± 3.5 (27–41)21 ± 1.9 (18–25)28 ± 2.7 (25–33)11 ± 1.7 (9.1–13.9)
Pharynx length (PL)170162 ± 5.9 (150–172)206 ± 14 (182–232)139 ± 5.0 (129–146)175 ± 6.4 (164–191)121 ± 8.0 (109–133)
Nerve ring – ant. end (NR)109112 ± 6.8 (103–129)165 ± 12.1 (143–182)91 ± 7.0 (75–104)109 ± 11.9 (88–127)63 ± 8.4 (54–71)
Excretory pore – ant. end (EP)114111 ± 10 (88–124)112 ± 11.9 (92–140)80 ± 9.2 (62–98)92 ± 8.1 (82–112)55 ± 6.7 (45–62)
Width at excretory pore (WEP)5861 ± 3.4 (49–65)137 ± 11.3 (123–170)35 ± 3.6 (30–42)60 ± 6.7 (51–74)22 ± 2.4 (19–25)
Neck length (stoma+pharynx, NL)182176 ± 6.4 (165–185)223 ± 14 (196–255)151 ± 5.0 (142–159)189 ± 6.5 (177–204)132 ± 8.3 (120–143)
Body width at neck base7986 ± 5.8 (76–96)217 ± 23 (195–264)41 ± 3.9 (36–50)95 ± 8.5 (82–107)29 ± 2.9 (24–32)
Testis reflexion630631 ± 37 (576–689)522 ± 32 (481–568)
Vagina length31 ± 3.1 (24–36)24 ± 3.3 (19–30)
Body width at vulva386 ± 53 (309–498)164 ± 25 (124–193)
Vulva – ant. end (VA)1989 ± 214 (1247–2252)1105 ± 101 (961–1295)
Vulva – post. end (VP)1776 ± 242 (1080–2038)976 ± 110 (801–1161)
Rectum length35 ± 4.0 (29–44)21 ± 2.5 (17–24)13.8 ± 1.9 (11–16)
Anal body diam. (ABD)3132 ± 3.9 (25–36)86 ± 7.1 (77–110)29 ± 4.1 (21–35)41 ± 6.8 (31–53)20 ± 1.7 (18–22)
Tail length (T)3734 ± 2.4 (29–39)38 ± 4.2 (32–49)26 ± 3.9 (21–35)49 ± 3.9 (38–53)58 ± 6.7 (49–66)
Hyaline part of tail (H)16.3 ± 4.1 (11.8–23.7)
Spicule length (SL)6664 ± 4.6 (56–70)44 ± 2.6 (40–49)
Gubernaculum length (GL)3436 ± 3.8 (31–43)25 ± 2.3 (21–29)
Stoma length/lip region width1.21.4 ± 0.2 (0.9–1.8)1.2 ± 0.2 (0.9–1.8)1.4 ± 0.3 (0.9–1.9)1.3 ± 0.3 (0.9–1.8)2.4 ± 0.5 (1.6–3.0)
Nerve ring % (NR/NL×100)6064 ± 5.3 (56–78)74 ± 7.1 (64–86)61 ± 4.6 (52–68)58 ± 6.6 (46–67)48 ± 7.8 (38–58)
Excretory pore % (EP/NL×100)6263 ± 6.1 (50–74)50 ± 4.6 (42–60)53 ± 6.6 (41–68)49 ± 4.1 (43–58)42 ± 4.4 (35–48)
Rectum% (R/ABD×100)0.4 ± 0.1 (0.3–0.6)0.5 ± 0.1 (0.3–0.8)0.7 ± 0.1 (0.6–0.9)
D% (EP /NL×100)6263 ± 6.1 (49–74)50 ± 4.9 (43–60)53 ± 6.6 (41–68)49 ± 4.1 (43–58)42 ± 4.4 (35–48)
E% (EP/T×100)311333 ± 43 (256–403)5.7 ± 1.2 (4.5–9.5)319 ± 59 (219–460)240 ± 36 (201–362)96 ± 12.8 (74–113)
SW% (SL/ABD×100)217208 ± 39 (154–297)2.3 ± 0.4 (1.8–3.4)
GS% (GL/SL×100)5157 ± 6.7 (46–70)0.6 ± 0.1 (0.4–0.7)
H% (H/T ×100)28 ± 5.8 (20–36)

[i] – = characters absent.

Table 2.

Comparison of morphometrics of the third-stage infective juveniles of Steinernema anantnagense n. sp. with other members of “Feltiae-Kushidai” clade. Measurements are in μm except n, ratio and percentage. Data for new species is in bold.

SpeciesReferenceCountrynLBDEPNRNLTabCc′D%E%H%
S. akhurstiQiu et al. (2005)China20770–83533–3555–6083–95115–12368–7523–266.6–7.210–123.3–3.745–5073–8649–56
S. anantnagense n. sp.Present StudyIndia20749–83432–4245–6254–71120–14349–6619–245.5–6.712–161.6–2.135–4874–11320–36
S. africanumMachado et al. (2022)Rwanda15690–80225–3254–6887–132123–16752–7223–304.3–6.310–152.9–4.234–4679–12928–39
S. cholashanenseNguyen et al. (2008)China20727–90926–3559–6572–97110–13860–8024–346.1–7.210–143.5–5.046–5376–9133–47
S. citraeStokwe et al. (2011)South Africa20623–84923–2849–6483–108118–13763–8125–345.1–7.113–1413–1739–5885–13237–50
S. feltiaeNguyen et al. (2007)Russia25766–92822–3258–67108–117130–14381–8927–345.8–6.89.4–114.5–5.144–5067–8137–51
S. hebeienseChen et al. (2006)China20610–71023–2843–5173–83100–11163–7124–285.7–6.79.4–11NA40–5065–8032–50
S. ichnusaeTarasco et al. (2008)Italy20767–96927–3559–6894–108119–14876–8924–325.6–6.99–124.2–5.142–4968–8344–50
S. jollietiSpiridonov et al. (2004)USA12625–82020–2853–65NA115–13560–7325–344.9–6.49–12NA46–50NA46–60
S. krausseiNguyen et al. (2007)Germany25797–110230–3650–6699–111119–14563–86NANANANANANA35–40
S. kushidaiMamiya (1998)Japan20424–66222–3142–5070–84106–12044–5919–254.9–5.910–13NA38–44NANA
S. litoraleYoshida (2004)Japan25834–98828–3354–6989–104114–13372–9127–316.7–7.910–11.93.8–5.444–5668–84NA
S. nguyeniMalan et al. (2016)South Africa20673–79622–2847–5874–86101–12161–7327–336.2–7.410–122.8–4.843–5770–8620–31
S. oregoneseLiu and Berry (1996)USA20820–111028–3860–72NA116–14864–7824–376–812–16NA40–6090–11030–33
S. populiTian et al. (2022)China25973–117233–4170–8698–113134–15955–7228–336.8–7.515–202.4–3.347–61105–14026–44
S. puntauvenseUribe-Lorío et al. (2007)Costa Rica19631–72831–3820–3046–6981–10351–5917–237.1–7.911–13NA25–5035–5652–55
S. sandneriLis et al. (2021)Poland25708–96523–3244–6483–118123–15164–8627–345.5–6.911–13NA36–4563–8623–40
S. sangiPhan et al. (2001)Vietnam20704–78430–4046–5478–97120–13876–8919–255.6–6.39–10NA36–4456–7044–52
S. silvaticumSturhan et al. (2005)Germany26670–97526–3551–7375–109100–14163–8623–336.3–7.710–133.1–4.946–5637–53
S. tielingenseMa et al. (2012)China20824–97932–3864–7390–105120–13574–8527–316.7–7.910–123.5–4.644–5668–8453–64
S. texanumNguyen et al. (2007)USA20732–79629–3452–6284–102111–12060–7922–276.2–7.010–133.3–4.646–5376–8853–69
S. xinbinenseMa et al. (2012)China20635–74428–3146–5375–90109–12565–7821–255–78–113–540–4765–7830–42
S. xueshanenseMrácek et al. (2009)China20768–92929–3360–7281–96130–14380–9226–325.8–7.09–113.8–5.146–5270–9046–55
S. weiseriMrácek et al. (2003)Czech Republic20586–82824–2943–6572–9295–11949–6825–335.7–7.210–143.2–4.144–55NA18–24

[i] NA = Not available; P = Present; A = Absent.

Table 3.

Comparison of morphometrics of the first-generation males of Steinernema anantnagense n. sp. with other members of “Feltiae-Kushidai” clade. Measurements are in μm except n, ratio and percentage. Data for new species is in bold.

SpeciesnLBDEPNRNLTSLGLaBcc′D%SW%GS%Mucron
S. akhursti201350–1925115–15093–113120–163168–20530–4085–10058–68NANANANA52–61140–20065–77P
S. anantnagense n. sp.201223–1899167–21188–124103–129165–18529–3956–7031–436–107–1134–640.8–1.649–74154–29746–70P
S. africanum15977–140065–13169–10979–104132–14734–4665–7632–499–127–1225–340.9–1.152–74144–19749–68P
S. cholashanense201070–177873–20475–13591–126135–17329–4360–7132–459–248–1136–510.6–0.950–8592–14461–85P
S. citrae201028–140287–11364–9292–119123–15517–3157–8032–59NANANANA47–67156–23348–89P
S. feltiae251414–181760–90110–126NA164–18037–4365–7734–47NANANANA51–6499–13052–61P
S. hebeiense201036–145074–9858–7378–93118–13224–3551–6338–5012–178–1130–490.6–0.948–59120–17060–90A
S. ichnusae201151–149473–20494–108NA135–17333–4864–6743–4620–297–929–390.8–0.959–65120–16264–69A
S. jollieti121296–195298–13583–110NA110–16824–3855–7045–6012–198–1453–86NA53–83NANAA
S. kraussei201200–1600110–14473–9995–122137–17836–4442–5329–37119 NANANANANANAP
S. kushidai201200–190075–15671–105120–137156–18930–4048–7239–60NANANANA42–59NANAA
S. litorale251230–151482–11177–10794–128133–16326–4167–8944–6412–168–1033–560.6–0.934–56154–20062–81P
S. nguyeni20818–117158–10647–7170–103112–14418–2558–7530–5511–157–1038–530.6–0.838–57185–27946–81P
S. oregonense201560–1820105–16195–139101–133139–18224–3265–7352–59NANANA0.6 NA64–75NANAA
S. populi251258–151466–9595–121107–143131–17739–6857–7738–6015–208–1020–330.8–1.559–78107–16058–82P/A
S. puntauvense191010–1931101–13968–114104–128130–15928–4071–8130–40NANANANA45–85140–20055–75P
S. sandneri251206–1635124–17864–92112–138148–17035–4653–6539–509–118–1031–42NA42–5997–12761–83P
S. sangi201440–2325120–22567–99109–166150–22127–4258–8034–46NANANANA42–63120–16050–70P
S. silvaticum26975–127052–7871–9290–126116–16820–4742–6430–4314–208–924–550.8–1.445–63NANAP
S. tielingense201430–2064111–15994–13396–132145–17322–3379–9849–7011–189–1357–850.3–0.664–78176–21259–82A
S. texanum201197–140681–11679–10094–114123–14719–3055–6639–53NANANANA58–73127–20362–84A
S. xinbinense201133–144090–12657–7591–120138–15930–4149–6230–4111–137–931–390.7–1.041–50114–15654–72P
S. xueshanense201313–204097–159113–137NA151–17529–4866–9141–60NANANANA73–8793–17258–95A
S. weiseri20990–139584–13857–8494–115134–15419–3262–7246–579–127–1036–640.6–0.939–60150–24070–85A

[i] NA = Not available; P = Present; A = Absent.

Table 4.

Comparison of morphometrics of the first-generation females of Steinernema anantnagense n. sp. with other members of “Feltiae-Kushidai” clade. Measurements are in μm except n, ratio and percentage. Data for new species is in bold.

SpeciesLBDEPNRNLTABcc′VABDD%Mucron
S. akhursti5625–9000200–270113–138150–175213–25838–6330*32*149*0.6*48–5368–100NAP
S. anantnagense n. sp.2327–4872314–40992–140143–182196–25532–4917–2913–2161–1220.5–0.850–5877–11043–60P
S. africanum2469–4215154–19467–11179–130170–20135–5513–2713–2451–1040.7–1.050–5737–7032–62P
S. cholashanense3232–6363156–332111–148176–223181–23146–7013–2318–3262–1190.6–1.050–5754–10529–65P
S. citrae2038–4019137–21254–90130–179189–22033–60NANANANA50–5943–7927–46P
S. feltiae3095–3774170–25468–97 **70–97 **197–30439–7014–2012–1749–880.7–1.2 *44–5747–6240–54 *P
S. hebeiense3972–4254142–24548–9588–123133–158133–15817–2521–2967–1290.5–0.950–5745–6536–66A
S. ichnusae4547–6186242–323106–156NA215–26251–7917–2421–2668–1130.6–1.051–5770–9447–63P
S. jollieti3746–6030219–29896–136NA184–31031–5515–2419–3172–185NA44–56NA52P
S. kraussei2500–5400153–28866–99127–146178–20533–59172288NA5439–5045P
S. kushidai2100–470054–5978–105111–144204–25530–45NANANANA54–5954–8437–46A
S. litorale3930–5048175–21565–105130–165185–21325–6021–2620–2678–1570.5–0.90.5–0.955–7533–57P
S. nguyeni2290–5361130–21649–9884–139137–19420–6715–3015–3053–1650.6–1.152–63130–21630–56A
S. oregonense4400–6200217–268217–268129–162186–22028–46NANANANA46–5642–7943–57A
S. populi4038–13762217–53190–178150–213213–27841–8818–3619–5075–1820.5–0.945–6060–15736–65A
S. puntauvense3687–8335181–22151–85123–146141–20641–66NANANANA51–5557–10225–45P
S. sandneri4244–5014181–26161–102132–158173–19432–6117–2524–2775–140NA49–5762–12236–54P
S. sangi4830–7200270–36080–121140–170216–24036–62NANANANA43–53084–14035–51P
S. silvaticum1520–329050–17550–17550–175121–18833–7915–4110–1834–801.0–1.844–5726–5333–79A
S. texanum2720–3623130–20278–107111–135160–18930–52NANANANA50–5550–71NAA
S. tielingense4028–8538200–30782–103111–144186–26340–6917–3221–4572–1580.5–0.949–5456–9232–49A
S. xinbinense3025–5121159–20070–87106–141167–19230–5319–2517–2679–1230.5–0.846–5750–6738–45P
S. xueshanense4181–8181182–343117–148NA196–27443–66NANANANA52–6238–72NAP
S. weiseri3780–5940202–26375–86108–154162–22638–5917–2922–3187–1560.5–0.850–5851–80NAP

[i] NA = Not available; P = Present; A = Absent.

Table 5.

Pairwise distances in base pairs of the ITS rRNA regions among closely related Steinernema species and Steinernema anantnagense n. sp. Data for new species is in bold.

Species (ITS rRNA)S. anantnagense n. sp. OQ407490S. akhursti DQ375757S. kushidaiAB243440S. cholashanense EF431959S. oregonense AY230180S. sangi AY355441S. texanum EF152568S. xueshanense FJ666052S. populi MZ367621S. jollieti AY171265S. xinbinense JN171593S. weiseri KJ696685S. tielingense GU994201S. africanum ON041031S. kraussei AY230175S. citrae EU754718S. silvaticum AY230162S. litorale AB243441S. ichnusae EU421129S. nguyeni KP325084S. feltiae AY230169S. hebeiense DQ105794S. monticola AB698756
S. anantnagense n. sp. OQ40749019537272727273747480838586868787909192101116117
S. akhursti DQ37575797517574737776657582868989908791939594102119115
S. kushidai AB243440929395899610390948997104101103108110104107110110122128130
S. cholashanense EF43195989888561745858106696872717283708273748475112116
S. oregonense AY230180898886914751339919314346395242455649525194115
S. sangi AY355441898885889357589857544345605360614848544788103
S. texanum EF1525688988839192915395616066675975556974697768110118
S. xueshanense FJ666052898886919591929941434654476044545753605486114
S. populi MZ3676218990868384848584105103110111112109113115117116112124145123
S. jollieti AY171265888886899791919483485254556455586356625895115
S. xinbinense JN171593888785909692919484934550325840385857575092116
S. weiseri KJ696685878683899494909382929317593260652627342780114
S. tielingense GU994201878684899393909282929398634665663028473288117
S. africanum ON041031878684899491919382929591916445357268646298124
S. kraussei AY230175868682879292889182909195939065694446194089120
S. citrae EU754718868682899491929482929491909390557370646098118
S. silvaticum AY2301628686838793918992819195909095909276706868101126
S. litorale AB243441868582899293889180909196968993898838453479118
S. ichnusae EU421129868582889393899281929296969093898994452587122
S. nguyeni KP325084858582879292889181909195939097909093934186117
S. feltiae AY230169848480889293899279919296959194919095969479119
S. hebeiense DQ105794818078828586828675858688868486858488868788135
S. monticola AB69875678797678798178797779797978777878777877787874

[i] Below diagonal: percentage similarity; above diagonal: total character difference.

Table 6.

Pairwise distances in base pairs of the D2D3 fragment of 28S rRNA regions among closely related Steinernema species and Steinernema anantnagense n. sp. Data for new species is in bold.

Species (D2D3 rRNA)S. anantnagense n. sp. OQ407498S. akhursti KF289902S. weiseri FJ165549S. oregonense GU569055S. puntauvense EF187018S. feltiae AF331906S. ichnusae EU421130S. africanum OM423154S. kushidai AF331897S. tielingense GU994202S. populi MZ367685S. xueshanense FJ666053S. kraussei KC631424S. jollieti GU569051S. cholashanense EF520284S. texanum EF152569S. xinbinense GU994204S. citrae MF540676S. silvaticum KC631426S. sangi MF620997S. nguyeni KR815816S. monticola GU395647
S. anantnagense n. sp. OQ40749851213131315161718181819192324252527303135
S. akhursti KF289902991616171717181822202222212627292728273338
S. weiseri FJ1655499898125576221318151691821191824322237
S. oregonense GU56905598989811111314241027178171322142519332938
S. puntauvense EF187018989899990452310231613101520161721302140
S. feltiae AF33190698989999100452310231613101520161721302140
S. ichnusae EU42113098989998999952514251715101920201725322140
S. africanum OM42315498989998999999211322191681822191226301537
S. kushidai AF331897989897979797979726302626292836293034323342
S. tielingense GU994202989798999999989897272010181225122220362644
S. populi MZ367685989798969797979796962730273029313238403744
S. xueshanense FJ666053989798989898989897979620222025223028413345
S. kraussei KC631424989798999898989897999697211327112716373145
S. jollieti GU569051989799989999999996989697972324222031352442
S. cholashanense EF520284979798989898989896989697989727102719383045
S. texanum EF152569979697979797979795979697969796323237393545
S. xinbinense GU994204979698989898979896989697999799963017393447
S. citrae MF540676979698979898989896979696969796969637421149
S. silvaticum KC631426969697989797979795979596989698959895414150
S. sangi MF620997969696969696969696959594959595959594954646
S. nguyeni KR815816969697969797979896979596969796959599959451
S. monticola GU395647959595959595959594949494949494949493939493

[i] Below diagonal: percentage similarity; above diagonal: total character difference.

Figure 6:

Maximum-likelihood phylogenetic tree between the newly described Steinernema anantnagense n. sp. and other closely related species of Steinernema species based on nucleotide sequences of: (A) the Internal Transcribed Spacer (ITS1-5.8S-ITS2) rRNA, flanked by primers 18S and 26S, and (B) the D2-D3 expansion segments of the large subunit (28S) of rRNA flanked by primers D2F and 536. Numbers at nodes represent bootstrap values based on 100 replications. Bars represent average nucleotide substitutions per sequence position. NCBI accession numbers of the nucleotide sequences used for the analyses are shown next to the species names. The scale bar shows the number of substitutions per site.

Figure 7:

Maximum-likelihood phylogenetic tree between the newly described Steinernema anantnagense n. sp. and other closely related species of Steinernema species based on the nucleotide sequences of: (A) the COI region of the mitochondrial gene, flanked by primers LCO-1490 and HCO-2198, and (B) the mitochondrial 12S rRNA gene, flanked by primers 505F and 506R. Numbers at nodes represent bootstrap values based on 100 replications. Bars represent average nucleotide substitutions per sequence position. NCBI accession numbers of the nucleotide sequences used for the analyses are shown next to the species names (accession numbers in bold font are the sequences newly generated in this study). The scale bar shows the number of substitutions per site.

Figure 8:

Phylogenetic reconstruction based on core genome sequences of Xenorhabdus bacterial strains. 1719910 nucleotide positions (1501 core genes) were used in the analysis. Numbers at the nodes represent SH-like branch supports. Bar represents 0.05 nucleotide substitutions per sequence position. Accession numbers of the genome sequences used for the reconstruction are shown in Table S3.

DOI: https://doi.org/10.2478/jofnem-2023-0029 | Journal eISSN: 2640-396X | Journal ISSN: 0022-300X
Language: English
Submitted on: Apr 6, 2023
Published on: Jul 13, 2023
Published by: Society of Nematologists, Inc.
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2023 Aashaq Hussain Bhat, Ricardo A. R. Machado, Joaquín Abolafia, Tarique Hassan Askary, Vladimír Půža, Alba Nazaret Ruiz-Cuenca, Aasha Rana, Samy Sayed, Laila A. Al-Shuraym, published by Society of Nematologists, Inc.
This work is licensed under the Creative Commons Attribution 4.0 License.