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Analysis of Diversity and Composition of Apis Cerana Gut Microbiome in Overwintering Period Cover

Analysis of Diversity and Composition of Apis Cerana Gut Microbiome in Overwintering Period

Journal of Apicultural Science
Volume 67 (2023): Issue 2 (December 2023)
By: Nannan Liu,  Wenming Lv,  Hongying Lv,  Zhihao San,  Yulan Piao and  Fenglin Li  
Open Access
|Dec 2023

Figures & Tables

Fig. 1.

Distribution of amplicon sequence variants (ASVs) in samples collected from October 2022 (YD_10) to March 2023 (YD_03). Each color represents a group, the number of exclusive ASVs in each month is shown in ellipses, and the number of shared ASVs is shown in circles.
Distribution of amplicon sequence variants (ASVs) in samples collected from October 2022 (YD_10) to March 2023 (YD_03). Each color represents a group, the number of exclusive ASVs in each month is shown in ellipses, and the number of shared ASVs is shown in circles.

Fig. 2.

Linear discriminant analysis (LDA) effect size analysis of differentially abundant (log10 LDA scores >2) bacterial taxa.
Linear discriminant analysis (LDA) effect size analysis of differentially abundant (log10 LDA scores >2) bacterial taxa.

Fig. 3.

Alpha diversity indexes in samples collected from October 2022 (YD_10) to March 2023 (YD_03).
Alpha diversity indexes in samples collected from October 2022 (YD_10) to March 2023 (YD_03).

Fig. 4.

Principal component analysis (PCA) and principal coordinate analysis (PCoA). Each point is a sample, and each color represents the samples collected from October 2022 (YD_10) to March 2023 (YD_03). The lines indicate relative distances.
Principal component analysis (PCA) and principal coordinate analysis (PCoA). Each point is a sample, and each color represents the samples collected from October 2022 (YD_10) to March 2023 (YD_03). The lines indicate relative distances.

Fig. 5.

Functional classification of proteins in a sample collected in December 2022 based on the Clusters of Orthologous Groups database.
Functional classification of proteins in a sample collected in December 2022 based on the Clusters of Orthologous Groups database.

Fig. 6.

Relative abundance of Kyoto Encyclopedia of Genes and genomes (KEGG), KEGG Orthology, and MetaCyc pathways. The bars indicate relative abundances.
Relative abundance of Kyoto Encyclopedia of Genes and genomes (KEGG), KEGG Orthology, and MetaCyc pathways. The bars indicate relative abundances.

Statistical table of sequence before and after quality control

Sample IDInputFilteredPercentage of input passed filterDenoisedMergedPercentage of input mergedNon-chimericPercentage of input non-chimeric
YD_10_1885397647486.37762307537985.146912778.08
YD_10_2818627146687.30711737070786.376506979.49
YD_10_3960197386576.93736177302076.056770970.52
YD_11_1866317461386.13743117352684.876825678.79
YD_11_2838557363887.82733657257686.556774280.78
YD_11_3849397421587.37740007320286.186795180.00
YD_12_1812837042186.64701476923785.186424579.04
YD_12_21101399677487.87961819409785.436517759.18
YD_12_3841017378087.73733247230485.976671679.33
YD_01_1924368054787.14800547903285.506732172.83
YD_01_2819707180287.60713987060386.136446878.65
YD_01_3849617433287.49739947330386.286634078.08
YD_02_1896037815887.23777977689385.826962777.71
YD_02_2841137375087.68733777246886.166543077.79
YD_02_3854467482587.57744737370386.266853880.21
YD_03_1861017592288.18755407447986.506706577.89
YD_03_2850077291285.77725567167184.316392175.19
YD_03_3804547081888.02705036983986.816428479.90
DOI: https://doi.org/10.2478/jas-2023-0009 | Journal eISSN: 2299-4831 | Journal ISSN: 1643-4439
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Language: English
Page range: 135 - 146
Submitted on: Aug 8, 2023
Accepted on: Oct 19, 2023
Published on: Dec 22, 2023
Published by: Research Institute of Horticulture
In partnership with: Paradigm Publishing Services
Publication frequency: 2 issues per year
Keywords:
Changbai Mountain,
gut microbiota,
overwintering period,
16S rDNA
Related subjects:
Life sciences,
Zoology,
Life sciences, other

© 2023 Nannan Liu, Wenming Lv, Hongying Lv, Zhihao San, Yulan Piao, Fenglin Li, published by Research Institute of Horticulture
This work is licensed under the Creative Commons Attribution 4.0 License.

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