Have a personal or library account? Click to login
Diversity analysis and cross-species amplification of custard apple (Annona squamosa) using simple sequence repeats developed via next-generation sequencing technology
Anuragi, H., Dhaduk, H. L., Kumar, S., Dhruve, J. J., Parekh, M. J., and Sakure, A. A. (2016). Molecular diversity of Annona species and proximate fruit composition of selected genotypes. 3 Biotech, 6, 204, https://doi.org/10.1007/s13205-016-0520-9.
Altschul S. F., Gish W., Miller W., Myers E. W., and Lipman, D. J. (1990). Basic local alignment search tool. Journal of Molecular Biology, 215(3), 403–410.
Beier, S., Thiel, T., Münch, T., Scholz, U., and Mascher, M. (2017). MISA-web: a web server for microsatellite prediction. Bioinformatics (Oxford, England), 33(16), 2583–2585, https://doi.org/10.1093/bioinformatics/btx198.
Bharad, S. G., Kulwal, P. L., and Bagal, S. A. (2009). Genetic diversity study in A. squamosal by morphological, biochemical and RAPD markers. Acta Horticulturae, 839, 615–623, https://doi.org/10.17660/ActaHortic.2009.839.84.
Biswas, M. K., Xu, Q., Mayer, C., and Deng, X. (2014). Genome wide characterization of short tandem repeat markers in sweet orange (Citrus sinensis). PloS ONE, 9(8), p.e104182, https://doi.org/10.1371/journal.pone.0104182.
Chapman, M. A. (2019). Optimizing depth and type of high-throughput sequencing data for microsatellite discovery. Applications in Plant Sciences, 7(11), p.e11298, https://doi.org/10.1002/aps3.11298.
Escribano, P., Viruel, M. A., and Hormaza, J. I. (2004). Characterization and cross species amplification of microsatellite markers in cherimoya (Annona cherimola Mill. Annonaceae). Molecular Ecology Notes, 4, 746–748, https://doi.org/10.1111/j.1471-8286.2004.00809.x.
Escribano, P., Viruel, M. A., and Hormaza, J. I. (2007). Molecular analysis of genetic diversity and geographic origin within an ex situ germplasm collection of cherimoya by using SSRs. Journal of the American Society for Horticultural Science, 132, 357–367, https://doi.org/10.21273/JASHS.132.3.357.
Escribano, P., Viruel, M. A., and Hormaza, J. I. (2008). PERMANENT GENETIC RESOURCES: Development of 52 new polymorphic SSR markers from cherimoya (Annona cherimola Mill.): transferability to related taxa and selection of a reduced set for DNA fingerprinting and diversity studies. Molecular Ecology Resources, 8, 317–321, https://doi.org/10.1111/j.1471-8286.2007.01941.x.
Evanno, G., Regnaut, S., and Goudet, J. (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 14(8), 2611–2620.
Gyamfi, K., Sarfo, D., Nyarko, B., Akaho, E., Serfor-Armah, Y., and Ampomah-Amoako, E. (2011). Assessment of elemental content in the fruit of graviola plant, Annona muricata, from some selected communities in Ghana by instrumental neutron activation analysis. Elixir Food Science, 41, 5671–5675. https://www.elixirpublishers.com/articles/1685693363_201112015.pdf.
Kalinowski, S. T., Taper, M. L., and Marshall, T. C. (2007). Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Molecular Ecology, 16, 1099–1106, https://doi.org/10.1111/j.1365-294X.2007.03089.x.
Kwapata, K., Mwase, W. F., Bokosi, J. M., Kwapata, M. B., and Munyenyembe, P. (2007). Genetic diversity of Annona senegalensis Pers. populations as revealed by simple sequence repeats (SSRs). African Journal of Biotechnology, 6, 1239–1247. https://www.internationalscholarsjournals.com/articles/geneticdiversity-of-annona-senegalensis-pers-populations-as-revealed-by-simplesequence-repeats-ssrs.pdf.
Liu, C., Zhang, Q., Yao, X., Zhong, C., Yan, C. and Huang, H. (2016). Characterization of genomewide simple sequence repeats and application in interspecific genetic map integration in kiwifruit. Tree Genetics & Genomes, 12, 1–9.
Mariod, A. A., Elkheir, S., Ahmed, Y. M., and Matthaus, B. (2010). A. squamosa and C. nilotica seeds, the effect of the extraction method on the oil composition. Journal of the American Oil Chemists’ Society, 87, 763–769, https://doi.org/10.1007/s11746-010-1548-3.
Peakall, R., and Smouse, P. E. (2006). GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288–295, https://doi.org/10.1111/j.1471-8286.2005.01155.x.
Pereira, M. F., Bandeira, L. F., Blanco, J. V., Ciampi, A. Y., and Coelho, S. G. (2008). Development of microsatellite markers in Annona crassiflora Mart., a Brazilian Cerrado fruit tree species. Molecular Ecology Resources, 8, 1329–1331, https://doi.org/10.1111/j.1755-0998.2008.02275.x.
Pinto, A. C., Cordeiro, M. C. R., Andrade, S. R. M., Ferreira, F. R., Filgueiras, H. A., Alves, R. E., and Kinpara, D. I. (2005). Annona species. UK: International Centre for Underutilized Crops, University of Southampton.
Rahman, M., Shimada, T., Yamamoto, T., Yonemoto, J. Y., and Yoshida, M. (1998). Genetic diversity of cherimoya cultivars revealed by Amplified Fragment Length Polymorphism (AFLP) analysis. Breeding Science, 48, 5–10.
Ravishankar, K. V., Anand, L., and Dinesh, M. R. (2000). Assessment of genetic relatedness among mango cultivars of India using RAPD markers. The Journal of Horticultural Science and Biotechnology, 75, 198–201, https://doi.org/10.1080/14620316.2000.11511223.
Ravishankar, K. V., Dinesh, M. R., Nischita, P., and Sandya, B. S. (2015). Development and characterization of microsatellite markers in mango (Mangifera indica) using next-generation sequencing technology and their transferability across species. Molecular Breeding, 35, 93, https://doi.org/10.1007/s11032-015-0289-2.
Ravishankar, K. V., Gayathri, M., Pitchaimuthu, M., and Santhosh-Kumar, G. (2017a). Identification of novel microsatellite markers in okra (Abelmoschus esculentus (L.) Moench) through next-generation sequencing and their utilization in analysis of genetic relatedness studies and cross-species transferability. Journal of Genetics, 97, 39–47, https://doi.org/10.1007/s12041-018-0893-0.
Ravishankar, K. V., Vasudeva, R., Hemanth, B., Sandya, B. S., Sthapit, B. R., Parthasarathy, V. A., and Ramanatha Rao, V. (2017b). Isolation and characterization of microsatellite markers in Garcinia gummi-gutta by next-generation sequencing and cross-species amplification. Journal of Genetics, 96, 213–218, https://doi.org/10.1007/s12041-017-0756-0.
Ronning, C. M., Schnell, R. J., and Gazit, S. (1995). Using randomly amplified polymorphic DNA (RAPD) markers to identify Annona cultivars. Journal of the American Society for Horticultural Science, 120, 726–729, https://doi.org/10.21273/JASHS.120.5.726.
Rozen, S., and Skaletsky, H. (2000). Primer3 on the WWW for General Users and for Biologist Programmers. In S. Misener and S. A. Krawetz (Eds). Bioinformatics Methods and Protocols. Methods in Molecular Biology™, vol 132. Totowa, NJ, USA: Humana Press, https://doi.org/10.1385/1-59259-192-2:365.
Schuelke, M. (2000). An economic method for the fluorescent labelling of PCR fragments. Nature Biotechnology, 18, 233–234, https://doi.org/10.1038/72708.
Thanachseyan, P., Samarasinghe, W. L. G., and Thirukkumaran, G. (2017). Diversity assessment of Annona muricata L. through molecular characterization using SSR markers. International Journal of New Technology and Research, 3, 57–62. https://www.ijntr.org/download_data/IJNTR03090025.pdf.
Van Zonneveld, M., Scheldeman, X., Escribano, P., Viruel, M. A., Damme, P. V., Garcia, W., Tapia, C., Romero, J., Siguen, M., and Hormaza, J. I. (2012). Mapping genetic diversity of cherimoya (Annona cherimola Mill.): application of spatial analysis for conservation and use of plant genetic resources. PloS ONE, 7(1), e29845, https://doi.org/10.1371/journal.pone.0029845.
Vinay, G. M., Sakthivel, T., and Priyanka, H. L. (2017). Recent advances in Annona breeding: A review. International Journal of Pure & Applied Bioscience, 2, 1168–1181.
Zhichang, Z., Guibing, H., Ruo, O., Yunchum, L., Yeyuan, C. and Shirong, L. (2011). Studies of the genetic diversity of seven sweetsop (Annona squamosa L.) cultivars by amplified fragment length polymorphism analysis. African Journal of Biotechnology, 10(35), 6711–6715.