Table 1.
Distribution of microsatellite types in A. squamosa genome.
| Motif types | Number of SSRs | Frequency (%) |
|---|---|---|
| Mono-nucleotide | 100658 | 56.20 |
| Di-nucleotide | 46493 | 25.96 |
| Tri-nucleotide | 15590 | 8.70 |
| Tetra-nucleotide | 2266 | 1.26 |
| Penta-nucleotide | 495 | 0.27 |
| Hexa-nucleotide | 202 | 0.11 |
| Compound nucleotide | 13376 | 7.4 |
| Total | 179080 |
Table 2.
Genetic analysis of SSR primers data using. A. squamosa genotypes.
| Locus | Forward sequence and reverse sequence 5′–3′ | Repeat motif* | Tm (°C) | No. of alleles per locus (k) | Ho | He | PIC | PI |
|---|---|---|---|---|---|---|---|---|
| ASIIHR01 F ASIIHR01 R | ACATGCCCTCAATCATCTCC AGTTAAAAATTAATGAATGAGCCAGG | (TA)6 | 55 | 23 | 0.50 | 0.93 | 0.91 | 0.0103 |
| ASIIHR02 F ASIIHR02 R | CTGAATTCTAACAGATGTGCTGGG GCTTTGGACGTCTACGCAT | (TA)8 | 60 | 20 | 0.60 | 0.91 | 0.90 | 0.0150 |
| ASIIHR03 F ASIIHR03 R | TCAGACTTCAACTCAAGTCGATCC TAATACCCAAGTCATGAAGACCAA | (AT)8 | 55 | 25 | 0.62 | 0.93 | 0.91 | 0.0114 |
| ASIIHR04 F ASIIHR04 R | ACTCGTACTGCTATAAAAGTGGGT ATGAGAGCTGCCCACGAC | (AT)7 | 55 | 37 | 0.65 | 0.97 | 0.95 | 0.0032 |
| ASIIHR05 F ASIIHR05 R | AAAACTGTCGGCTTCCATGT AGA AC C A AC AC AGC TTC C ATT | (TA)6 | 55 | 20 | 0.80 | 0.84 | 0.82 | 0.0364 |
| ASIIHR06 F ASIIHR06 R | CTTCTGTTGTCATCACTCGCA CACGATAGAAATCGAAGAACAGA | (TA)6 | 55 | 22 | 0.52 | 0.90 | 0.88 | 0.0186 |
| ASIIHR07 F ASIIHR07 R | AAATATCAAGTTTAAAGCAGTATTTGC TACAAGCGGGACATAGAAGC | (TA)6 | 55 | 30 | 0.97 | 0.95 | 0.93 | 0.0064 |
| ASIIHR08 F ASIIHR08 R | GATAGGAAGACAAACAGTTAGTTTAGG CGGCAGCTTTCTTCTTGTTC | (AG)6 | 55 | 28 | 0.92 | 0.91 | 0.90 | 0.0143 |
| ASIIHR09 F ASIIHR09 R | CCAAGAAATCTCACGTTCGC TCTTTCTTTAGCAAGTAGTGGTTTTT | (AG)13 | 60 | 30 | 0.82 | 0.95 | 0.93 | 0.0065 |
| ASIIHR10 F ASIIHR10 R | TGTGGGTTTATATTGACCATCATT GTGGAGCTAGGGTTCTTCGTC | (GA)8 | 60 | 31 | 0.97 | 0.93 | 0.94 | 0.0057 |
| ASIIHR11 F ASIIHR11 R | ACGCTTTTCTTCTCCGGC CTCGCCTGCTCCTCTCAC | (GA)9 | 55 | 26 | 0.52 | 0.95 | 0.91 | 0.0110 |
| ASIIHR12 F ASIIHR12 R | GCTTTGAGAGAAAATGAGAGACAA CTACCTTTCCGGCGAATCC | (AG)11 | 55 | 30 | 0.92 | 0.91 | 0.93 | 0.0065 |
| ASIIHR13 F ASIIHR13 R | GATATTCAAAGAGCACGAGAGGA AAAAGTTAGTCGGCAAATCCC | (GA)6 | 55 | 33 | 0.70 | 0.88 | 0.89 | 0.0147 |
| ASIIHR14 F ASIIHR14 R | GTGAGAGAGAGAGAAGGAAGGC GCGAATCTCTCTTCCGACAG | (GA)10 | 55 | 19 | 0.70 | 0.93 | 0.85 | 0.0284 |
| ASIIHR15 F ASIIHR15 R | TTTTCTCTTTTCTTCGTTCTTGC GAGGGGGCTGGTGACCTAT | (GA)12 | 60 | 25 | 0.82 | 0.92 | 0.91 | 0.0107 |
| ASIIHR16 F ASIIHR16 R | CCTAATCGGAAAGGTGCAAA TGGCTTTATTGGATGTGTTTGA | (AC)7 | 55 | 23 | 0.70 | 0.85 | 0.91 | 0.0126 |
| ASIIHR17 F ASIIHR17 R | GCTAAGACGGGGCCAACC TGCCTTATTTCTTTAAACAGGGTC | (AC)6 | 60 | 16 | 0.75 | 0.87 | 0.83 | 0.0388 |
| ASIIHR18 F ASIIHR18 R | CTCTCTCTTGTGCTTCTCCCA CTTTCTCTCTCTCCCCCTCC | (AC)6 | 55 | 18 | 0.82 | 0.97 | 0.84 | 0.0338 |
| ASIIHR19 F ASIIHR19 R | TGACGAGATCGAATTAAGTACCC TGATGCCTATAAAAGGGGCA | (CA)8 | 60 | 46 | 0.92 | 0.94 | 0.96 | 0.0022 |
| ASIIHR21 F ASIIHR21 R | ACCAGCAAATCCTGGGAAG TGAATCTGCAACTCAAAACTGA | (AC)6 | 55 | 29 | 1.00 | 0.78 | 0.93 | 0.0076 |
| ASIIHR21 F ASIIHR21 R | TTGATGCAATTCTTCAGTTTGA TACAAGGGTTGGGAATTTGG | (AC)8 | 55 | 16 | 0.92 | 0.92 | 0.74 | 0.0758 |
| ASIIHR22 F ASIIHR22 R | CATACATTTTGCCCACGACC CACAGATACACACACACGAACAA | (GT)8 | 60 | 25 | 0.77 | 0.95 | 0.90 | 0.0132 |
| ASIIHR23 F ASIIHR23 R | AAAAAGTCCATTCTTTTTCTCCA TCATTTCTTCATCCCATTGC | (GT)6 | 55 | 28 | 0.92 | 0.94 | 0.93 | 0.0066 |
| ASIIHR24 F ASIIHR24 R | CACATCACCCATATAAAAAGCG GTTGGGACAACTCTTCACCC | (TG)6 | 60 | 35 | 0.82 | 0.93 | 0.93 | 0.0065 |
| ASIIHR25 F ASIIHR25 R | CAGCGATGGTTGCTTAATTTG AGTAGGTGGAGAGACCCACG | (GT)6 | 55 | 25 | 0.77 | 0.93 | 0.92 | 0.0099 |
| ASIIHR26 F ASIIHR26 R | AGCAAAAGTGGTCATCCGAA TTTTAGATCGCTAAGAAGATCACA | (TG)13 | 60 | 30 | 0.80 | 0.96 | 0.91 | 0.0102 |
| ASIIHR27 F ASIIHR27 R | TCGCTATTTCAAAATTAAGTAAAAGAA TGTTTTAGTTGAGCAAGGCTAGG | (TG)8 | 55 | 37 | 0.82 | 0.96 | 0.95 | 0.0044 |
| ASIIHR28 F ASIIHR28 R | TCTTGTTTTTGCCAGTTCCC GCTTGAACTCAAAGCATGTTG | (GT)8 | 60 | 34 | 0.87 | 0.87 | 0.95 | 0.0038 |
| ASIIHR29 F ASIIHR29 R | TGTTACTGTTGGGCATGGAA GGTTGGGTTGAAAATTTAAGCA | (GT)6 | 55 | 23 | 0.67 | 0.95 | 0.85 | 0.0263 |
| ASIIHR30 F ASIIHR30 R | CCTTCCACCCTTGGATCTTA GATCAATGTGGATAAAACTTCGC | (CT)6 | 55 | 33 | 0.82 | 0.97 | 0.94 | 0.0058 |
| ASIIHR31 F ASIIHR31 R | CTTTTCTTCTCCATTTTCCCG CGTTGGAGATTCCAAGAGAAA | (CT)8 | 55 | 44 | 0.95 | 0.95 | 0.95 | 0.0031 |
| ASIIHR32 F ASIIHR32 R | AGGTGGATCGCTTAAGATGAA TCTGAGCAGGTGTGTAGTCCT | (TC)6 | 55 | 29 | 0.80 | 0.92 | 0.93 | 0.0069 |
| ASIIHR33 F ASIIHR33 R | ACTGGCCGAGGAAAGGGT GAGAGGGAGGAAAAAGTTAATCG | (TC)12 | 55 | 28 | 0.97 | 0.97 | 0.91 | 0.0117 |
| ASIIHR34 F ASIIHR34 R | CTCCCCGTTACCCAACTG GGTTCCTTCCGTCCTCCTG | (CT)9 | 55 | 35 | 0.72 | 0.96 | 0.95 | 0.0034 |
| ASIIHR35 F ASIIHR35 R | TTTC ATAGC TTTTATTGC TTTCTTAG AGTCGGGTCGAATCCACA | (GA)8 | 55 | 40 | 0.85 | 0.96 | 0.95 | 0.0036 |
| ASIIHR36 F ASIIHR36 R | CTTCTGTCTTCCTCATTTTCTCG TGGGAGAGAAGTGAGAGAGC TT | (AG)8 | 60 | 35 | 0.77 | 0.94 | 0.94 | 0.0047 |
| ASIIHR37 F ASIIHR37 R | GGCCACACTTGCTCAAAAAT TTCTTATTGATGCGTAGCGG | (GC)7 | 55 | 19 | 0.92 | 0.90 | 0.92 | 0.0090 |
| ASIIHR38 F ASIIHR38 R | GGGAGGAAACTTGATCCCTT AAAATTATGGTGCAGTGGCG | (GC)6 | 60 | 15 | 0.27 | 0.94 | 0.88 | 0.0196 |
| ASIIHR39 F ASIIHR39 R | GGCCACACTTGCTCAAAAAT TTCTTATTGATGCGTAGCGG | (GC)7 | 55 | 28 | 0.27 | 0.97 | 0.92 | 0.0087 |
| ASIIHR40 F ASIIHR40 R | CCAATCCCTTTATCCAAGCA GTGCAATTTGAAAAGCAGCA | (GC)7 | 55 | 35 | 0.27 | 0.93 | 0.96 | 0.0027 |
| ASIIHR41 F ASIIHR41 R | CATCTCCGCAACACCAGATA GCCAGAAGAGGCAGTGATTC | (GC)8 | 55 | 27 | 0.67 | 0.94 | 0.92 | 0.0092 |
| ASIIHR42 F ASIIHR42 R | AGAGGAAAACTTACAAAAACATAGACG GCCCTAAGAGAGCAGTTTACCC | (ATG)6 | 55 | 26 | 0.30 | 0.93 | 0.92 | 0.0089 |
| ASIIHR43 F ASIIHR43 R | GTATGTCATGGAGGATACAGGGA CATCCTCATCATCTCCCACA | (GAA)5 | 55 | 23 | 0.25 | 0.90 | 0.92 | 0.0091 |
| ASIIHR44 F ASIIHR44 R | ACTGCTGCTGAGATGTGCG CTGCTGCTGCTGTTGACG | (GAT)7 | 55 | 23 | 0.30 | 0.92 | 0.91 | 0.0112 |
| ASIIHR45 F ASIIHR45 R | TTATTGTATAAAACACCCCAAAGAA TTCTTATCATTTTGCCCGTCT | (TTC)10 | 60 | 18 | 0.45 | 0.96 | 0.89 | 0.0183 |
| ASIIHR46 F ASIIHR46 R | TTGGCAACCATCAGAATAAGA ACAACCCTGCTTCCATTCAA | (AAT)5 | 60 | 17 | 0.35 | 0.94 | 0.90 | 0.0152 |
| ASIIHR47 F ASIIHR47 R | AAAAACCTTGGGCTTGTGC CCTTGCCCCTATTATTTTCC | (TCT)6 | 55 | 32 | 0.37 | 0.95 | 0.95 | 0.0037 |
| ASIIHR48 F ASIIHR48 R | TTGGTGAAGCATTCAAAAATTC CCTTGCCCCTATTATTTTCC | (ATG)10 | 55 | 32 | 0.52 | 0.93 | 0.93 | 0.0072 |
| ASIIHR49 F ASIIHR49 R | TCAAACGCCCGCATATTTA GCTGGAGAAAGACGGCAAG | (AGC)5 | 55 | 26 | 0.40 | 0.94 | 0.93 | 0.0070 |
| ASIIHR50 F ASIIHR50 R | ACCTCAAAGCTAGGGGGTAAA CCGAAGTAGAGATACGCCTCTT | (GAA)5 | 55 | 26 | 0.35 | 0.93 | 0.92 | 0.0103 |
| ASIIHR51 F ASIIHR51 R | AAAATGAGCATGAAGAAAAGAAAAA GATTGTAAGACAAATTGAGATGTAATG | (ATT)10 | 55 | 22 | 0.30 | 0.94 | 0.93 | 0.0081 |
| ASIIHR52 F ASIIHR52 R | TCCCATTTTCTGATCGAGTTG TAACCCTCGCCGTGAATAG | (TCA)5 | 55 | 23 | 0.42 | 0.93 | 0.92 | 0.0101 |
| ASIIHR53 F ASIIHR53 R | AGACTAATCTAAGTTTAAAGCAAGCAA TGATC TTTGTTGAAGCGTCTCT | (AAG)5 | 55 | 21 | 0.45 | 0.94 | 0.92 | 0.0090 |
| ASIIHR54 F ASIIHR54 R | TTCAAGAATCATCTTTTAAGTCAACC TTTTCATGGAAACAACCAAATG | (GTG)5 | 55 | 30 | 0.45 | 0.94 | 0.92 | 0.0079 |
| ASIIHR55 F ASIIHR55 R | TCACTTGGAATAATGTGGAACG CAGTCCCCAGCTCCAAAC | (GTC)11 | 55 | 19 | 0.40 | 0.91 | 0.89 | 0.0181 |
| ASIIHR56 F ASIIHR56 R | CCCCAATCCCAATCCTTAGT GGAGTTCGTGTGCTTTACCG | (AGC)5 | 55 | 28 | 0.75 | 0.96 | 0.94 | 0.0047 |
| ASIIHR57 F ASIIHR57 R | GACGTGCTGCTG GGATTCTTCACCAGGCAGTT | (CGA)5 | 55 | 24 | 0.35 | 0.92 | 0.90 | 0.0134 |
| ASIIHR58 F ASIIHR58 R | AAAATGCATGCCTTGTTTGT TAGTCCTTGAGCAACACATGC | (ATTC)7 | 60 | 23 | 0.55 | 0.91 | 0.90 | 0.0146 |
| ASIIHR59 F ASIIHR59 R | AAGGGCATGTTGTCTTCTCAA TTTGCAAGTTTATTTCTGCTCAA | (TTGT)6 | 60 | 29 | 0.45 | 0.95 | 0.93 | 0.0070 |
| ASIIHR60 F ASIIHR60 R | TCCCGACCTTTCTTACGGAT TTTATCTCTATCTCTCCACCGGA | (ATCTC)6 | 60 | 22 | 0.67 | 0.87 | 0.85 | 0.0276 |
| ASIIHR61 F ASIIHR61 R | AATATGTTAACCCGAAACTCAACC AATAATTACATAATTGATGAGGGTCAA | (TAGGGT)5 | 55 | 16 | 0.60 | 0.95 | 0.78 | 0.0571 |
| ASIIHR62 F ASIIHR62 R | CTCTGTTTCTATCTCTCTCAAACTCA GGAATGGGAGAGTATTTGAAGG | (TC)9tgtctctcatt(TC)6 | 55 | 34 | 0.50 | 0.87 | 0.94 | 0.0058 |
| ASIIHR63 F ASIIHR63 R | TACCGGATCTCTCATTTTCG GCTGGGAGAGTGAGCTGAAA | (TC)5cgccatttctatctct ctctccgtcattcct ctctctctttctctgttttccttt ggaaaaatcggca aacccaaat(TC)6 | 55 | 24 | 0.62 | 0.81 | 0.90 | 0.0139 |
| ASIIHR64 F ASIIHR64 R | CATGTTGGACATGTGAGCCA ATGCCTATTTTAGGCTGGGT | (A)10g(A)10 | 55 | 28 | 0.85 | 0.95 | 0.91 | 0.0101 |
| ASIIHR65 F ASIIHR65 R | GGCGTCCAAAAATTGAGATT TTTGGGGAGTATCTACTCAGGC | (AT)7gtatttgccccatggg ccccaaaaaaaataaa(AT)7 ttttagactttcaa(AT)7 | 55 | 31 | 0.67 | 0.92 | 0.92 | 0.0082 |
| ASIIHR66 F ASIIHR66 R | TCTACGCTACCCAGCAAATG AATGACAATATGATTTGCCTTGA | (T)11(TA)6* | 55 | 28 | 0.67 | 0.93 | 0.90 | 0.0128 |
| ASIIHR67 F ASIIHR67 R | CCGACTTCAACCTTCTGAGC TCAATGGAATATTCACTTTTCTAGG | (A)11ttaaaacagattta tcaaaaatgttctta cgagaaagggaaaa taggagaaaaaggt agaatgagggttttc tttttgtgcgtgttttgga(AG)8 | 55 | 27 | 0.60 | 0.94 | 0.91 | 0.0075 |
| ASIIHR68 F ASIIHR68 R | GTGGATACTCCCCGACTGG TTCACATACTTTTGCCTGAGTAGA | (AAT)6 | 55 | 26 | 0.55 | 0.95 | 0.92 | 0.0066 |
| ASIIHR69 F ASIIHR69R | TTCACATACTTTTGCCTGAGTAGA GCCATCTTGGGCTTTTTAGA | (AT)6gacctcttcgctcaatccaagcctcaatgtc(A)10 | 55 | 21 | 0.67 | 0.92 | 0.90 | 0.0143 |
| ASIIHR70F ASIIHR70 R | GAAGGGAGATGCAAACGTTAAG AACTGCTTGCTTTATGCACTTT | (A)11(T)10 | 55 | 27 | 0.60 | 0.92 | 0.91 | 0.0118 |
* Indicates the number of times a particular motif was repeated in the microsatellite locus. For example: (TA6 – means TA has been repeated six times in the sequence results analysed during SSR identification. He, expected heterozygosity; Ho, observed heterozygosity; PI, probability of identity; PIC, polymorphic information content; SSR, simple sequence repeat.

Figure 1.
Dendrogram analysis of A. squamosa genotypes using SSR markers data. SSR, simple sequence repeat.

Figure 2.
Structure analysis of Annona genotypes using SSR data.
Table 3.
Cross species amplification of 70 SSR loci derived from A. squamosa.
| No. | Locus | A. cherimola | A. reticulata | A. glabra | A. muricata | A. atemoya |
|---|---|---|---|---|---|---|
| 1 | ASIIHR01 | A | A | A | A | A |
| 2 | ASIIHR02 | A | A | A | A | A |
| 3 | ASIIHR03 | A | A | A | A | A |
| 4 | ASIIHR04 | A | A | A | A | A |
| 5 | ASIIHR05 | A | A | A | A | A |
| 6 | ASIIHR06 | A | A | A | A | A |
| 7 | ASIIHR07 | NA | A | NA | A | NA |
| 8 | ASIIHR08 | A | A | A | A | A |
| 9 | ASIIHR09 | A | A | A | A | A |
| 10 | ASIIHR10 | A | A | A | A | A |
| 11 | ASIIHR11 | A | A | A | A | A |
| 12 | ASIIHR12 | A | A | A | A | A |
| 13 | ASIIHR13 | A | A | A | A | A |
| 14 | ASIIHR14 | A | A | A | A | A |
| 15 | ASIIHR15 | A | A | A | A | A |
| 16 | ASIIHR16 | A | A | A | A | A |
| 17 | ASIIHR17 | A | A | A | A | A |
| 18 | ASIIHR18 | A | A | A | A | A |
| 19 | ASIIHR19 | A | A | A | A | A |
| 20 | ASIIHR20 | A | A | A | A | A |
| 21 | ASIIHR21 | A | A | A | A | A |
| 22 | ASIIHR22 | A | A | A | NA | NA |
| 23 | ASIIHR23 | A | A | A | A | A |
| 24 | ASIIHR24 | A | A | A | A | A |
| 25 | ASIIHR25 | A | A | A | A | A |
| 26 | ASIIHR26 | A | A | A | A | A |
| 27 | ASIIHR27 | NA | A | A | A | NA |
| 28 | ASIIHR28 | A | A | A | A | A |
| 29 | ASIIHR29 | A | A | A | A | A |
| 30 | ASIIHR30 | A | A | A | A | A |
| 31 | ASIIHR31 | A | A | A | A | A |
| 32 | ASIIHR32 | A | A | A | A | A |
| 33 | ASIIHR33 | A | A | A | A | A |
| 34 | ASIIHR34 | A | A | A | A | A |
| 35 | ASIIHR35 | A | A | A | A | NA |
| 36 | ASIIHR36 | A | A | A | A | A |
| 37 | ASIIHR37 | A | A | A | A | A |
| 38 | ASIIHR38 | A | A | A | A | A |
| 39 | ASIIHR39 | A | A | A | A | A |
| 40 | ASIIHR40 | A | A | A | A | A |
| 41 | ASIIHR41 | A | A | NA | A | NA |
| 42 | ASIIHR42 | A | A | A | A | A |
| 43 | ASIIHR43 | A | A | A | A | A |
| 44 | ASIIHR44 | A | A | A | A | A |
| 45 | ASIIHR45 | A | A | A | A | A |
| 46 | ASIIHR46 | A | A | A | A | A |
| 47 | ASIIHR47 | A | A | A | A | A |
| 48 | ASIIHR48 | A | A | A | A | NA |
| 49 | ASIIHR49 | A | A | A | A | A |
| 50 | ASIIHR50 | A | A | A | A | A |
| 51 | ASIIHR51 | NA | A | A | A | A |
| 52 | ASIIHR52 | A | A | A | NA | NA |
| 53 | ASIIHR53 | NA | A | A | A | NA |
| 54 | ASIIHR54 | A | A | A | A | A |
| 55 | ASIIHR55 | A | A | A | A | A |
| 56 | ASIIHR56 | A | A | A | A | A |
| 57 | ASIIHR57 | A | A | A | A | A |
| 58 | ASIIHR58 | A | NA | A | NA | NA |
| 59 | ASIIHR59 | A | A | A | A | A |
| 60 | ASIIHR60 | A | A | A | NA | NA |
| 61 | ASIIHR61 | A | A | A | A | A |
| 62 | ASIIHR62 | A | NA | A | NA | NA |
| 63 | ASIIHR63 | A | A | A | A | A |
| 64 | ASIIHR64 | A | A | A | A | A |
| 65 | ASIIHR65 | A | A | A | NA | NA |
| 66 | ASIIHR66 | A | A | A | A | A |
| 67 | ASIIHR67 | A | A | A | A | A |
| 68 | ASIIHR68 | A | NA | A | NA | NA |
| 69 | ASIIHR69 | A | A | A | A | A |
| 70 | ASIIHR70 | A | A | A | A | A |
| Transferability % | 94.2 | 95.7 | 97.1 | 90.00 | 80.00 |
Table 4.
AMOVA analysis of genetic variances within and among populations of 40 custard apple accessions.
| Source of variation | df | SS | MS | Estimated variance | % Variation |
|---|---|---|---|---|---|
| Among populations | 5 | 213.769 | 42.74 | 0.021 | 0 |
| Among individuals | 34 | 1447.244 | 42.56 | 9.870 | 30 |
| Within individuals | 40 | 913.00 | 22.825 | 22.825 | 70 |
| Total | 100 |
Supplementary Table 1.
List of 40 custard apple (A. squamosa) genotypes/cultivars belonging to A. squamosa and different species of Annona used in the study.
| Sl. No. | Cultivars/accessions No. | Place of collection | State |
|---|---|---|---|
| 1. | Balanagar | Sangareddy | Telangana |
| 2. | Raidurg | Ananthapur | Andhra Pradesh |
| 3. | Taiwan | Taiwan | Taiwan |
| 4. | Arka_Sahan (IC No. 0632061) | IIHR | Karnataka |
| 5. | NMK_1 | Garmale | Maharashtra |
| 6. | APK_1 | Aruppukottai | Tamil Nadu |
| 7. | WASHINGTON_05 | Florida | USA |
| 8. | Barbados | Florida | USA |
| 9. | Washington_97 | Florida | USA |
| 10. | 19/26 (IC no. 0632061) | IIHR, Bangalore | Karnataka |
| 11. | Arka Neelanchal Vikram | Bhubaneswar | Odisha |
| 12. | Mammoth | Florida | USA |
| 13. | Red_sitaphal | Sangareddy | Telangana |
| 14. | 6_8 | Nalakadoddi | Andhra Pradesh |
| 15. | 2_1 | Vengalampalli | Andhra Pradesh |
| 16. | 3_1 | Vengalampalli | Andhra Pradesh |
| 17. | 1_1 | Vengalampalli | Andhra Pradesh |
| 18. | 8_8 | Pythota | Andhra Pradesh |
| 19. | 8_9 | Pythota | Andhra Pradesh |
| 20. | 2_2 | Vengalampalli | Andhra Pradesh |
| 21. | 27_1 | Jambugumpala | Andhra Pradesh |
| 22. | 5_8 | Molakalmuru | Karnataka |
| 23. | 3_2 | Vengalampalli | Andhra Pradesh |
| 24. | 5_1 | Molakalmuru | Karnataka |
| 25. | 8_18 | Pythota | Andhra Pradesh |
| 26. | 1_10 | Vengalampalli | Andhra Pradesh |
| 27. | 8_16 | Pythota | Andhra Pradesh |
| 28. | 11_8 | Yercaud | Tamil Nadu |
| 29. | 3_3 | Vengalampalli | Andhra Pradesh |
| 30. | 4_11 | Molakalmuru | Karnataka |
| 31. | 8_17 | Pythota | Andhra Pradesh |
| 32. | 1_5 | Vengalampalli | Andhra Pradesh |
| 33. | 2_13 | Vengalampalli | Andhra Pradesh |
| 34. | 4_1 | Molakalmuru | Karnataka |
| 35. | 2_10 | Vengalampalli | Andhra Pradesh |
| 36. | 4_10 | Molakalmuru | Karnataka |
| 37. | 6_10 | Nalakadoddi | Andhra Pradesh |
| 38. | 4_12 | Molakalmuru | Karnataka |
| 39. | 8_7 | Pythota | Andhra Pradesh |
| 40. | Rolenia | Moodubidire | Karnataka |
| 41. | A. cherimola | Sangareddy | Telangana |
| 42. | A. reticulata | Sangareddy | Telangana |
| 43. | A. glabra | Sangareddy | Telangana |
| 44. | A. muricata | Sangareddy | Telangana |
| 45. | A. atemoya | Sangareddy | Telangana |
Supplementary Table 2.
Summary of sample Balanagar assembled genome.
| Plant WGS | Balanagar |
|---|---|
| Contigs generated | 1388525 |
| Maximum contig length | 21462 |
| Minimum contig length | 100 |
| Average contig length | 466.126 |
| Total contigs length | 647227553 (647.2 MB) |
| Total number of non-ATGC characters | 54429 |
| Percentage of non-ATGC characters | 8.40956E-05 |
| Contigs >100 b: | 1379816 |
| Contigs >500 b: | 350135 |
| Contigs >1 Kb: | 170254 |
| Contigs >10 Kb: | 19 |
| Contigs >100 Kb: | 0 |
| n50 value: | 954 |
| n90_value: | 151 |
| kmer length | 89 |
| Total number of scaffolds | 58528 |
| Total number of identified SSRs | 1790080 |