References
- Bajc, M. 2011. Genetic differentiation of the Western Capercaillie highlights the importance of Southeastern Europe for understanding the species phylogeography. PLoS One, 6 (8), e23602.
- Banks, S.C., Piggott, M.P. 2022. Non-invasive genetic sampling is one of our most powerful and ethical tools for threatened species population monitoring: a reply to Lavery et al. Biodiversity Conservation, 31, 723–728.
- Bergl, R.A., Vigilant, L. 2007. Genetic analysis reveals population structure and recent migration within the highly fragmented range of the Cross River gorilla. Molecular Ecology, 16, 501–516.
- Brookfield, J.F.Y. 1996. A simple new method for estimating null allele frequency from heterozygote deficiency. Molecular Ecology, 5, 453–455.
- Caizergues, A., Dubois, S., Mondor, G., Rasplus, J.F. 2001. Isolation and characterization of microsatellite loci in black grouse (Tetrao tetrix). Molecular Ecology Notes, 1 (1/2), 36–38.
- Caizergues, A., Rätti, O., Helle, P., Rotelli, L., Ellison, L., Rasplus, J.Y. 2008. Population genetic structure of male black grouse (Tetrao tetrix L.) in fragmented vs. continuous landscapes. Molecular Ecology, 12, 2297–2305.
- Coppes, J., Kochs, M., Ehrlacher, J., Suchant, R., Braunisch, V. 2015. The challenge of creating a large-scale capercaillie distribution map. Grouse News, 50, 21–23.
- Coppes, J., Ehrlacher, J., Thiel, D., Suchant, R., Braunisch, V. 2017. Outdoor recreation causes effective habitat reduction in capercaillie Tetrao urogallus: a major threat for geographically restricted populations. Journal of Avian Biology, 48, 1583–1594.
- Earl, D.A., vonHoldt, B.M. 2012. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation Genetics Research, 4, 359–361.
- Escoda, L. et al. 2024. Genomic analysis of geographical structure and diversity in the capercaillie (Tetrao urogallus). Conservation Genetics, 25, 277–290.
- Evanno, G., Regnaut, S., Goudet, J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 14, 2611–2620.
- Gaggiotti, O.E. 1996. Population genetic models of source-sink metapopulations. Theoretical Population Biology, 50, 178–208.
- Goudet, J. 2001. FSTAT V2.9.3, a program to estimate and test gene diversities and fixation indices. Available at http://www.unil.ch/izea/softwares/fstat.htlm
- Jakobsson, M., Rosenberg, N.A. 2007. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics, 23, 1801–1806.
- Jepsen, M.R. et al. 2015. Transitions in European land-management regimes between 1800 and 2010. Land Use Policy, 49, 53–64.
- Jombart, T. 2008. ADEGENET: a R package for the multivariate analysis of genetic markers. Bioinformatics, 24, 1403–1405.
- Jombart, T., Ahmed, I. 2011. ADEGENET 1.3-1: new tools for the analysis of genome-wide SNP data. Bioinformatics, 27 (21), 3070–3071.
- Jombart, T., Devillard, S., Balloux, F. 2010. Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genetics, 11, 94.
- Klinga, P., Mikolás, M., Zhelev, P., Höglund, J., Paule, L. 2015. Genetic differentiation of western capercaillie in the Carpathian Mountains: the importance of post glacial expansions and habitat connectivity. Biological Journal of the Linnean Society, 116, 873–889.
- Klinga, P. et al. 2020. Temporal landscape genetic data indicate an ongoing disruption of gene flow in a relict bird species. Conservation Genetics, 21, 329–340.
- Kulakowski, D., Svoboda, M., Bebi, P. 2017. The central role of disturbances in mountain forests of Europe. Forest Ecology and Management, 388, 1–2. DOI: https://doi.org/10.1016/j.foreco.2016.07.03
- Kunz, F., Kohnen, A., Nopp-Mayr, U., Coppes, J. 2021. Past, present, future: tracking and simulating genetic differentiation over time in a closed metapopulation system. Conservation Genetics, 22, 355–368.
- Kunz, F. et al. 2022. Assessment of drivers of spatial genetic variation of a ground-dwelling bird species and its implications for conservation. Ecology and Evolution, 12, e8460.
- Mäki-Petäys, H., Corander, J., Aalto, J., Liukkonen, T., Helle, P., Orell, M. 2007. No genetic evidence of sex-biased dispersal in a lekking bird, the capercaillie (Tetrao urogallus). Journal of Evolutionary Biology, 20, 865–873.
- Mikoláš, M. et al. 2017. Forest management impacts on capercaillie (Tetrao urogallus) habitat distribution and connectivity in the Carpathians. Landscape Ecology, 32, 163–179.
- Mikoláš, M. et al. 2019. Primary forest distribution and representation in a Central European landscape: results of a large-scale field-based census. Forest Ecology and Management, 449, 117466.
- Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583–589.
- Peakall, R., Smouse, P.E. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics Applications Note, 28 (19), 2537–2539.
- Paetkau, D., Slade, R., Burden, M., Estoup, A. 2004. Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Molecular Ecology, 13, 55–65.
- Pavlovska, M., Höglund, J. 2015. Ukrainian black grouse Tetrao tetrix: genetic diversity and population structure. Wildlife Biology, 21, 283–293.
- Rannala, B., Mountain, J.L. 1997. Detecting immigration by using multilocus genotypes. Proceedings of the National Academy of Sciences USA, 94, 9197–9221.
- Sabatini, F.M. et al. 2018. Where are Europe’s last primary forests? Diversity and Distributions, 24, 1426–1439.
- Schlaepfer, D.R., Braschler, B., Rusterholz, H.-P., Baur, B. 2018. Genetic effects of anthropogenic habitat fragmentation on remnant animal and plant populations: a meta-analysis. Ecosphere, 9 (10), e02488.
- Svobodová, J., Segelbacher, G., Höglund, J. 2011. Genetic variation in black grouse populations with different lekking systems in the Czech Republic. Journal of Ornithology, 152, 37–44.
- Petit, R.J., El Mousadik, A., Pons, O. 1998. Identifying populations for conservation on the basis of genetic markers. Conservation Biology, 12, 844–855.
- Piertney, S.B., Höglund, J. 2001. Polymorphic microsatellite DNA markers in black grouse (Tetrao tetrix). Molecular Ecology Notes, 1 (4), 303–304.
- Piry, S., Alapetite, A., Cornuet, J.M., Paetkau, D., Baudouin, L., Estoup, A. 2004. GeneClass2: A Software for Genetic Assignment and First-Generation Migrant Detection. Journal of Heredity, 95, 536–539.
- Pritchard, J.K., Stephens, M., Donnelly, P. 2000. Inference of population structure using multilocus genotype data. Genetics, 155, 945–959.
- Raymond, M., Rousset, F. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Heredity, 86, 248–249.
- R Core Team. 2017. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org/
- Rosenberg, N.A. 2004. DISTRUCT, a program for the graphical display of population structure. Molecular Ecology Notes, 4, 137–138.
- Rousset, F. 2008. Genepop’007: a complete reimplementation of the Genepop software for Windows and Linux. Molecular Ecology Resources, 8, 103–106.
- Rutkowski, R., Dulisz, B., Szczepański, S., Nowakowski, J.J., Zwijacz-Kozica, T., Krzan, P. 2017a. Conservation genetics of the capercaillie in Poland – estimating the size of the Tatra National Park population by the genotyping of non-invasive samples. Fragmenta Faunistica, 60, 119–128.
- Rutkowski, R., Jagołkowska, P., Zawadzka, D., Bogdanowicz, W. 2016. Impacts of forest fragmentation and post-glacial colonization on the distribution of genetic diversity in the Polish population of the hazel grouse Terastes bonasia. European Journal of Wildlife Research, 62, 293–306.
- Rutkowski, R., Keller, M., Jagołkowska, P. 2012. Population genetics of the hazel hen Bonasa bonasia in Poland assessed with non-invasive samples. Central European Journal of Biology, 7, 759–775.
- Rutkowski, R., Zawadzka, D., Suchecka, E., Merta, D. 2017b. Conservation genetics of the capercaillie in Poland – delineation of conservation units. PLoS ONE, 2:e0174901.
- Santorek, A., Kuligowska, B., Szczepański, S., Dulisz, B., Rutkowski, R. 2018. Ocena liczebności głuszca (Tetrao urogallus) w Babiogórskim Parku Narodowym na podstawie analiz genetycznych prób nieinwazyjnych. Studia i Materiały CEPL, 54 (4), 125−133.
- Santorek, A., Zwijacz-Kozica, T., Dulisz, B., Merta, D., Rutkowski, R. 2020. Biased sex-ratio in woodland grouse population of the Tatra National Park, suggested by molecular sexing of non-invasive samples. Fragmenta Faunistica, 63 (2), 129–136.
- Segelbacher, G., Paxton, R..J., Steinbruck, G., Trontelj, P., Storch, I. 2000. Characterization of microsatellites in capercaillie Tetrao urogallus (Aves). Molecular Ecology, 9 (11), 1934–1935.
- Segelbacher, G., Storch, I., Tomiuk, J. 2003. Genetic evidence of capercaillie Tetrao urogallus dispersal sources and sinks in the Alps. Wildlife Biology, 9, 267–273.
- Sittenthaler, M. 2018. Fine-scale genetic structure in an eastern Alpine black grouse Tetrao tetrix metapopulation. Journal of Avian Biology, 49, jav-01681.
- Szczepański, S., Santorek, A., Dulisz, B., Żurek, Z., Armatys, P., Rutkowski, R. 2019. How many of them? Genetic diversity, survival and effective population size of the capercaillie (Tetrao urogallus Linnaeus, 1758) population from the Gorce Mountains. Fragmenta Faunistica, 62 (2), 135–144.
- Weir, B.S, Cockerham, C.C. 1984. Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358–1370.
- Więcław-Michniewska, J. 2013. Cities and towns in the Polish Carpathians: opportunities and limitations of urban development. In: The Carpathians: integrating nature and society towards sustainability (eds. J. Kozak, K. Ostapowicz, A. Bytnerowicz, B. Wyżga). Environmental Science and Engineering, Springer, Berlin, Heidelberg.
- Wright, S. 1943. Isolation by distance. Genetics, 28, 114–138.
- Zawadzka, D. 2014. Podręcznik najlepszych praktyk ochrony głuszca i cietrzewia. Centrum Koordynacji Projektów Środowiskowych, Warszawa.
- Zawadzka, D. et al. 2019. Population size and distribution of the capercaillie in Poland in the 21st century. Sylwan, 163, 733–783.
- Żurek, Z., Armatys, P. 2011. Występowanie głuszca Tetrao urogallus w polskich Karpatach Zachodnich – wnioski z monitoringu w latach 2005−2010 oraz końcowa ocena liczebności karpackich subpopulacji głuszca i cietrzewia. Studia i Materiały CEPL, 27, 229−240.