Have a personal or library account? Click to login
“Old Techniques for New Times”: the RMaCzek package for producing Czekanowski’s diagrams Cover

“Old Techniques for New Times”: the RMaCzek package for producing Czekanowski’s diagrams

Open Access
|Dec 2020

References

  1. Bar-Joseph Z., Demaine E.D., Gifford D.K., Jaakkola T. (2001): Fast optimal leaf ordering for hierarchical clustering. Bioinformatics 17(1): 22–29.10.1093/bioinformatics/17.suppl_1.S2211472989
  2. Barnard S.T., Pothen A., Simon H.D. (1993): Algorithm for envelope reduction of sparse matrices. In: Proceedings of the 1993 ACM/IEEE Conference on Supercomputing, pages 493–502, New York.10.1145/169627.169790
  3. Bartoszek K., Pienaar J., Mostad P., Andersson S., Hansen T.F. (2012): A phylogenetic comparative method for studying multivariate adaptation. Journal of Theoretical Biology 314: 204–215.10.1016/j.jtbi.2012.08.00522940235
  4. Bergman P. (2003): Wybrane metody odległości wielocechowych–rys historyczny (Some multivariate distnace methods—a historical perspective, in Polish). In: Metody statystyczne w antropologii, VI Warsztaty Antropologiczne im. Profesora Janusza Charzewskiego (Statistical Methods in Anthropology, the Sixth Prof. Janusz Charzewski Anthropological Workshop), Warsaw.
  5. Boryło A., Skwarzec B., Olszewski G. (2012): The radiochemical contamination (210Po and 238U) of zone around phosphogypsum waste heap in Wiślinka (northern Poland). Journal of Environmental Science and Health, Part A 47(5): 675–687.10.1080/10934529.2012.66005222416862
  6. Cieśla A. (2009): Effect of hydrotechnical constructions on the Oder river on the phytosociological diversity of riparian habitats in the prawików forest. Forest Research Papers 70(2): 161–174. (in Polish).10.2478/v10111-009-0016-z
  7. Czekanowski J. (1909): Zur Differentialdiagnose der Neandertalgruppe. Korespondentblatt der Deutschen Gesellschaft für Anthropologie, Ethnologie und Urgeschichte XL(6/7): 44–47.
  8. Dołęgowska S., Migaszewski Z.M., Michalik A. (2013): Hylocomium splendens (Hedw.) B.S.G. and Pleurozium schreberi (Brid.) Mitt. as trace element bioindicators: Statistical comparison of bioaccumulative properties. Journal of Environmental Sciences 25(2): 340–347.10.1016/S1001-0742(12)60040-0
  9. Earle D., Hurley C.B. (2015): Advances in dendrogram seriation for applications to visualization. Journal of Computational and Graphical Statistics 24(1): 1–25.10.1080/10618600.2013.874295
  10. Everitt B., Hothorn T. (2011): An Introduction to Applied Multivariate Analysis with R. Springer.10.1007/978-1-4419-9650-3
  11. Florek K., Łukasiewicz J., Perkał J., Steinhaus H., Zubrzycki S. (1951): Sur la liason et la division des points d’un ensemble fini. Colloquium Mathematicum 2: 282–285.10.4064/cm-2-3-4-282-285
  12. Hahsler M., Hornik K., Buchta C. (2008): Getting things in order: An introduction to the R package seriation. Journal of Statistical Software 25(3): 1–34.10.18637/jss.v025.i03
  13. Havens T.C., Bezdek J.C., Keller J.M., Popescu M. (2009): Clustering in ordered dissimilarity data. International Journal of Intelligent Systems 24:504–528.10.1002/int.20344
  14. Homa M., Mościbrodzka M. (2016): Application of diagram methods and hierarchical agglomerative procedures to assess the risk of investment funds on the Warsaw Stock Exchange. Financial Sciences 4(29): 21–34.10.15611/nof.2016.4.02
  15. Jaskulski P., Sołtysiak A. (2004): Diagram Czekanowskiego: pomysł, historia, zastosowania. Prace Naukowe Akademii Ekonomicznej we Wrocławiu. Taksonomia 11(1022): 374–383. (Czekanowski’s Diagram : Idea, History, Implementations, in Polish).
  16. Kogan J. (2007): Introduction to Clustering Large and High–Dimensional Data. Cambridge University Press.
  17. Krakowiak-Bal A. (2009): Multidimensional comparative analysis of other gainful activities of agricultural holdings in EU countries. Infrastruktura i Ekologia Terenów Wiejskich 7: 129–137.
  18. Liiv I. (2010): Seriation and matrix reordering methods: An historical overview. Statistical Analysis and Data Mining 3(2): 70–91.10.1002/sam.10071
  19. Paradis E., Schliep K. (2018): ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R. Bioinformatics 35: 526–528.10.1093/bioinformatics/bty63330016406
  20. Schwalbe G.A. (1906): Studien zur Vorgeschichte des Menschen. E. Nägele, Stuttgart.10.5962/bhl.title.61918
  21. Scrucca L. (2013): GA: A package for genetic algorithms in R. Journal of Statistical Software 53(4):1–37.10.18637/jss.v053.i04
  22. Scrucca L. (2017): On some extensions to GA package: hybrid optimisation, parallelisation and islands evolution. The R Journal 9(1): 187–206.10.32614/RJ-2017-008
  23. Sołtysiak A. (2000): Przedstawienie Boga–Węża na pieczęciach cylindrycznych z okresu akadyjskiego: analiza ikonograficzna. Studia i Materiały Archeologiczne 10: 189–214. (Depiction of the Serpent God on cylinder seals from the Akkadian era: an iconographic analysis, in Polish).
  24. Sołtysiak A., Jaskulski P. (1999): Czekanowski’s diagram. a method of multidimensional clustering. In: New Techniques for Old Times. CAA 98. Computer Applications and Quantitative Methods in Archaeology. Proceedings of the 26th Conference, Barcelona, March 1998, number 757 in BAR International Series, pages 175–184, Oxford.
  25. Späth H. (1980): Cluster Analysis Algorithms for Data Reduction and Classification of Objects. Ellis Horwood, Chichester.
  26. Stadler T. (2009): On incomplete sampling under birth-death models and connections to the sampling-based coalescent. Journal of Theoretical Biology 261(1): 58–68.10.1016/j.jtbi.2009.07.01819631666
  27. Stadler T. (2011): Simulating trees with a fixed number of extant species. Systematic Biology 60(5): 676–684.10.1093/sysbio/syr02921482552
  28. Steinhaus H. (1956): Sur la division des corps matériels en parties. Bulletin de l’Academie Polonaise des Sciences IV(12): 801–804.
  29. Stołyhwa K. (1907): Czy H. primigenius stanowi gatunek odrębny od H. sapiens? Światowit 8: 10–34. (Is H. primigenius a separate species from H. sapiens?, in Polish. Reprint of “Homo primigenius appartient–il a une espece distincte de Homo sapiens”, published in l’Anthropolgie in 1908).
  30. Stołyhwa K. (1908): Czaszka z Nowosiółki jako dowód istnienia w okresie historycznym kształtów pokrewnych z Homo primigenius. Rozprawy Wydziału matematyczno–przyrodnicznego Akademii Umiejętności XLVIII(B): 1–27. (The skull from Nowosiółka as proof of existence during the era of history shapes common with Homo primigenius, in Polish).
  31. Szczotka F.A. (1972): On a method of ordering and clustering of objects. Applicationes Mathematicae (Zastosowania Matematyki) XIII(1): 23–34.10.4064/am-13-1-23-34
  32. Västerlund A. (2019): Czekanowski’s Diagram: Implementing and exploring Czekanowski’s Diagram with different seriation methods. PhD thesis, Division for Statistics and Machine Learning, Department of Computer and Information Science, Linköping University.
  33. Warzecha K. (2015): The use of quantitative methods in research on selected behavioral addictions of young people. Studia Ekonomiczne 247: 121–139.
DOI: https://doi.org/10.2478/bile-2020-0008 | Journal eISSN: 2199-577X | Journal ISSN: 1896-3811
Language: English
Page range: 89 - 118
Published on: Dec 31, 2020
Published by: Polish Biometric Society
In partnership with: Paradigm Publishing Services
Publication frequency: 2 issues per year

© 2020 Krzysztof Bartoszek, Albin Västerlund, published by Polish Biometric Society
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.