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Nearest-match identification of C_ farionis to known sequences in NCBI database_
| GenBank acc. no. | Gene | Species |
|---|---|---|
| JF803919.1 | small subunit ribosomal RNA gene (18S) partial | C. farionis |
| MG594291.1 | small subunit ribosomal RNA gene (18S) partial | C. farionis |
| DQ094172.1 | small subunit ribosomal RNA gene (18S) partial | Ascarophis arctica |
| MN294781.1 | small subunit ribosomal RNA gene (18S) partial | Comephoronema werestschagini |
| MN294783.1 | small subunit ribosomal RNA gene (18S) partial | Capillospirura ovotrichuria |
| MG594289.1 | small subunit ribosomal RNA gene (18S) partial | Capillospirura sp. |
| JF934733.1 | small subunit ribosomal RNA gene (18S) partial | Proleptus sp. |
| DQ442660.1 | small subunit ribosomal RNA gene (18S) partial | Neoascarophis macrouri |
| JF803921.1 | small subunit ribosomal RNA gene (18S) partial | N. longispicula |
| JF803926.1 | small subunit ribosomal RNA gene (18S) partial | Heliconema longissimum |
| JF803949.1 | small subunit ribosomal RNA gene (18S) partial | H. longissimum |
| JF803930.1 | small subunit ribosomal RNA gene (18S) partial | Ascarophis adioryx |
| MT086834.1 | large subunit ribosomal RNA gene (28S) partial | C. farionis |
Descriptions of samples used in this study_
| Ecological group of fish | Sex | Body weight, g | Total length, mm | Fork length, mm | Type of sample for microbiome analysis | Number of pooled samples |
|---|---|---|---|---|---|---|
| 1-N1g | F | 304.4 | 355.0 | 309.0 | Gut | 15 |
| Gut | 15 | |||||
| “Body” | 15 | |||||
| “Body” | 15 | |||||
| Swim bladder | 1 | |||||
| 2-N1g | M | 652.1 | 438.0 | 400.0 | Gut | 20 |
| “Body” | 20 | |||||
| Swim bladder | 1 | |||||
| 3-N2 | M | 229.6 | 292.0 | 260.0 | Gut | 5 |
| Gut | 5 | |||||
| Gut | 10 | |||||
| Gut | 25 | |||||
| “Body” | 5 | |||||
| “Body” | 5 | |||||
| “Body” | 10 | |||||
| “Body” | 25 | |||||
| Swim bladder | 1 | |||||
| 4-N2 | F | 294.3 | 295.0 | 333.0 | Gut | 20 |
| “Body” | 20 | |||||
| Swim bladder | 1 |
Prevalence, intensity and mean abundance of C_ farionis in swim bladder of three morphs of nosed charr at different sampling times_
| Year | Month | Prevalence, % | Intensity | Mean abundance | Number of fish |
|---|---|---|---|---|---|
| Nosed charr N1 (n = 227) a | |||||
| 2013 | VI-VIII | 69 | 0–328 | 83.0 ± 3.9 | 13 |
| 2014 | VI | 96 | 0–452 | 144.0 ± 15.4 | 49 |
| VII | 84 | 0–335 | 131.0 ± 13.6 | 50 | |
| VIII | 87 | 0–526 | 150.0 ± 18.2 | 38 | |
| IX | – b | – | – | – | |
| X | 94 | 0–550 | 140.0 ± 18.2 | 47 | |
| XI | 100 | 12–508 | 154.9 ± 23.4 | 30 | |
| Nosed charr N1g (n = 2) | |||||
| 2020 | IX-X | 100 | 15–20 | 16.6 ± 5.0 | 2 |
| Nosed charr N2 (n = 57) | |||||
| 2013 | VI-VIII | 82 | 0–685 | 172.0 ± 44.8 | 17 |
| 2014 | VI | 63 | 0–274 | 126.0 ± 42.0 | 8 |
| VII | 80 | 0–362 | 179.0 ± 38.9 | 10 | |
| VIII | 100 | 43–252 | 118.0 ± 28.8 | 8 | |
| IX | 100 | 23 | 23.0 | 1 | |
| X | 100 | 130–376 | 243.0 ± 33.1 | 8 | |
| XI | 100 | 155–466 | 333.0 ± 92.0 | 3 | |
| 2020 | IX-X | 100 | 5–45 | 32.5 ± 12.5 | 2 |
| Nosed charr N3 (n = 37) | |||||
| 2013 | VI-VIII | 88 | 0–519 | 205.0 ± 58.2 | 8 |
| 2014 | VI | – | – | – | – |
| VII | 100 | 28–225 | 130.0 ± 44.5 | 4 | |
| VIII | 100 | 420 | 420.0 | 1 | |
| IX | 74 | 0–466 | 102.0 ± 24.04 | 23 | |
| X | 100 | 318 | 318.0 | 1 | |
| XI | – | – | – | – | |
| 2020 | IX-X | – | – | – | – |