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Molecular approach to confirm traditional identification of Radopholus similis sampled in Tanzania Cover

Molecular approach to confirm traditional identification of Radopholus similis sampled in Tanzania

Open Access
|Mar 2020

Figures & Tables

Figure 1:

Micrographs of Radophilis similis collected from Tanzania. Representative anatomy shown for males (A-F) and females (G-L): (A, G) Entire body structure; (B, H) pharyngeal region; (C, I) posterior region; (D, J) anterior region (stylet, stylet knobs, and median bulb shown by red, yellow, and purple arrows, respectively); (E, K) posterior region (vulva and spicule shown by white arrows); and (F, L) tail region. Scale bars: 50 µm (A-G) and 25 µm (B-F, H-L).

Table 1.

Morphometrics (µm) of adult R. similis female and male populations collected from the agro-ecological zones sampled. Data are means ± SD and standard range (Roy et al., 2018; Elbadri et al., 1999) in parentheses.

Female populationsMale populations
Parametera Lake zoneNorthern zoneSouthern Highlands zoneZanzibar islandsLake zoneNorthern zoneSouthern Highlands zoneZanzibar islands
L520.5 ± 11.4564.1 ± 11.4554.3 ± 11.4581.0 ± 11.4486.3 ± 12.2566.1 ± 12.2542.8 ± 12.2570.5 ± 12.2
(500 – 600)(500–600)(500 – 600)(500 – 600)(440 – 685)(440–685)(440 – 685)(440 – 685)
a28.5 ± 5.128.5 ± 5.127.3 ± 3.930.3 ± 2.729.5 ± 3.831.8 ± 5.233.1 ± 3.633.1 ± 3.6
(20 – 34.0)(20 – 34.0)(20 – 34.0)(20 – 34.0)(24.5 – 42.5)(24.5 – 42.5)(24.5 – 42.5)(24.5 – 42.5)
b6.3 ± 1.14.93 ± 0.75.79 ± 0.75.6 ± 0.85.2 ± 0.35.3 ± 0.55.4 ± 0.35.1 ± 0.2
(4.2 – 6.6)(4.2 – 6.6)(4.2 – 6.6)(4.2 – 6.6)(4.1 – 5.6)(4.1 – 5.6)(4.1 – 5.6)(4.1 – 5.6)
b'5.1 ± 0.54.2 ± 0.64.9 ± 0.54.8 ± 0.65.4 ± 0.55.4 ± 0.75.5 ± 0.85.9 ± 0.7
(3.3 – 5.7)(3.3 – 5.7)(3.3 – 5.7)(3.3 – 5.7)(3.7 – 6.8)(3.7 – 6.8)(3.7 – 6.8)(3.7 – 6.8)
c8.2 ± 1.07.9 ± 0.57.5 ± 0.58.4 ± 1.26.8 ± 0.36.8 ± 0.67.3 ± 0.16.9 ± 0.6
(6.8 – 12.2)(6.8 – 12.2)(6.8 – 12.2)(6.8 – 12.2)(6.3 – 10.3)(6.3 – 10.3)(6.3 – 10.3)(6.3 – 10.3)
c'4.4 ± 0.74.2 ± 1.05.12 ± 0.84.8 ± 0.55.8 ± 0.75.7 ± 1.05.8 ± 1.16.4 ± 0.7
(2.8 – 6.2)(2.8 – 6.2)(2.8 – 6.2)(2.8 – 6.2)(3.7 – 6.9)(3.7 – 6.9)(3.7 – 6.9)(3.7 – 6.9)
Sl10.8 ± 1.110.6 ± 1.110.7 ± 1.110.4 ± 1.110.3 ± 2.210.0 ± 2.09.8 ± 2.28.7 ± 2.2
(14 – 18)(14 – 18)(14 – 18)(14 – 18)(8 – 13)(8 – 13)(8 – 13)(8 – 13)
V51 ± 0.955.5 ± 0.955.4 ± 0.858.2 ± 0.7131.7 ± 2.1144.0 ± 2.1131.6 ± 2.2131.7 ± 2.1
(50.7 – 59)(50.7 – 59)(50.7 – 59)(50.7 – 59)(128 – 250)(128 – 250)(128 – 250)(128 – 250)
W16.0 ± 3.018.0 ± 3.017.6 ± 3.018.8 ± 3.014.5 ± 2.016.1 ± 2.114.7 ± 2.114. 7 ± 2.3
(13 – 21)(13 – 21)(13 – 21)(13 – 21)(14 – 18)(14 – 18)(14 – 18)(14 – 18)
t64.7 ± 2.073.3 ± 2.375.2 ± 2.072.3 ± 2.669.2 ± 2.081.8 ± 1.972.0 ± 2.180.5 ± 2.0
(52 – 100)(52 – 100)(52 – 100)(52 – 100)(60 – 90)(60 – 90)(60 – 90)(60 – 90)
OL72.5 ± 2.691.8 ± 2.682.7 ± 3.184.8 ± 3.663.8 ± 2.180.1 ± 2.276.4 ± 2.272.5 ± 2.0
(69 – 99)(69 – 99)(69 – 99)(69 – 99)(62 – 123)(62 – 123)(62 – 123)(62 – 123)
DGO3.0 ± 0.43.5 ± 0.53.2 ± 0.52.6 ± 0.51.8 ± 0.12.4 ± 0.52.6 ± 0.31.5 ± 0.3
(2.0 – 5.5)(2.0 – 5.5)(2.0 – 5.5)(2.0 – 5.5)(1.5–3.0)(1.5 – 3.0)(1.5 – 3.0)(1.5 – 3.0)

1 Note: *Abbreviations are defined in Siddiqi, (2000).

Figure 2:

Bayesian consensus trees inferred for Radophilis similis. (A) Tree inferred from SSU & ITS1 rRNA. (B) Tree inferred from ITS1 and ITS2 rRNA. (C) Tree inferred from LSU rRNA. Posterior probability values >50% are shown. Sequences original to this study are labeled green, red, and blue for trees in (A), (B), and (C) respectively; sequences labeled pink represent outgroup species.

DOI: https://doi.org/10.21307/jofnem-2020-020 | Journal eISSN: 2640-396X | Journal ISSN: 0022-300X
Language: English
Page range: 1 - 8
Submitted on: Aug 2, 2019
Published on: Mar 17, 2020
Published by: Society of Nematologists, Inc.
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2020 Doreen M. Mgonja, Gladness E. Temu, Joseph C. Ndunguru, Magreth F. Mziray, Sylvester L. Lyantagaye, Nessie D. Luambano, published by Society of Nematologists, Inc.
This work is licensed under the Creative Commons Attribution 4.0 License.