A comparison of Meloidogyne graminicola genome information with the published plant-parasitic nematode genomes_
| Sl. no. | Nematode | Sequencing platform | Assembly approach/assembler/assembly-pipeline | Assembly size | No. of scaffolds | N50 value (kbp) | CEGMA score (complete/partial %) or complete% | Reference | Year | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Meloidogyne incognita | Sanger, ABI3730x1 DNA analyzer | De-novo, Arachne | 86.1 | 2,995 | 62.5 | 77/80.6 | Abad et al. (2008) | 2008 | ||
| 2 | Meloidogyne hapla | ABI3730, megabase dequence analyzer | De-novo, Arachne v2.0.1 | 53.0 | 3,452 | 37.6 | 94.8/96.8 | Opperman et al. (2008) | 2008 | ||
| 3 | Bursaphelenchus xylophilus | 454 FLX, illumina GAI | De-novo, Newbler v2.3, Velvet v 1.0.12, AbacasII, IMAGE, iCORN | 74.6 | 5,527 | 949.8 | 97.6/98.4 | Kikuchi et al. (2011) | 2011 | ||
| 4 | Meloidogyne floridensis | Illumina HiSeq2000 | De-novo, Velvet v1.1.04 | 96.7 | 58,696 | 3.7 | 58.1/77.4 | Lunt et al. (2014) | 2014 | ||
| 5 | Globodera pallida | ABI 3730 Capillary DNA Analyser, 454 GS-20 and GS-FLX sequencer, Illumina GAIIx | De-novo, Celera, Newbler, Abyss v1.2.7, SSPACE v1 | 124.6 | 6,873 | 122 | 74.19/80.65 | Cotton et al. (2014) | 2014 | ||
| 6 | Pratylenchus coffeae | Roche 454 | De-novo, Newbler | 19.7 | 5,821 | 10 | NA | Burke et al. (2015) | 2015 | ||
| 7 | Globodera rostochiensis | Illumina HiSeq2000 | De-novo, SGA v0.9.7, Velvet v1.3.7, SSPACE, Gapfiller | 95.9 | 4,377 | 89 | 93.55/95.56 | Eves-van den Akker et al. (2016) | 2016 | ||
| 8 | Meloidogyne enterolobii | Illumina L30 | De-novo, Platanus | 162.4 | 46,090 | 9.2 | 81 /NA | Szitenberg et al. (2017) | 2017 | ||
| 9 | Meloidogyne floridensis | Illumina SJF1 | De-novo, Platanus | 74.9 | 9,134 | 13.2 | 84 | Szitenberg et al. (2017) | 2017 | ||
| 10 | Meloidogyne incognita | Illumina W1 | De-novo, Platanus | 122.1 | 33,735 | 16.4 | 83 | Szitenberg et al. (2017) | 2017 | ||
| 11 | Globodera ellingtonae | HISeq, MiSeq, PacBio | De-novo assembler Allpaths-LG, PBJelly | 119.1 | 2,248 | 360 | 92/96 | Phillips et al. (2017) | 2017 | ||
| 12 | Meloidogyne javanica | Illumina VW4 | De-novo, Platanus | 142.6 | 34,394 | 14.2 | 90 | Szitenberg et al. (2017) | 2017 | ||
| 13 | Meloidogyne arenaria | Illumina HarA | De-novo, Platanus | 163.7 | 46,509 | 10.5 | 91 | Szitenberg et al. (2017) | 2017 | ||
| 14 | Ditylenchus destructor | Illumina HiSeq2500, PacBio RSII | De-novo, ALLPATHS-LG, SSPACE, pb-jelly, Gapfiller | 112 | 1,761 | 570 | 91 | Zheng et al. (2016) | 2016 | ||
| 15 | Meloidogyne incognita | 454, Illumina HiSeq2000 | De-novo, MIRA, SSPACE, GapCloser (SOAPdenovo 2) | 183.5 | 12,091 | 38.6 | 97 | Blanc-Mathieu et al. (2017) | 2017 | ||
| 16 | Meloidogyne javanica | 454, Illumina HiSeq2000 | De-novo, MIRA, SSPACE, GapCloser (SOAPdenovo 2) | 256.3 | 31,341 | 10.4 | 96 | Blanc-Mathieu et al. (2017) | 2017 | ||
| 17 | Meloidogyne arenaria | 454, Illumina HiSeq2000 | De-novo, MIRA, SSPACE, GapCloser (SOAPdenovo 2) | 235.5 | 26,196 | 16.4 | 95 | Blanc-Mathieu et al. (2017) | 2017 | ||
| 18 | Meloidogyne graminicola | Illumina GAIIx | De-novo, Platanus, Redundans | 38.18 | 4,304 | 20.4 | 84.27/90.73 | This study | 2018 | ||