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Distribution and Identification of Endophytic Streptomyces Species from Schima wallichii as Potential Biocontrol Agents against Fungal Plant Pathogens Cover

Distribution and Identification of Endophytic Streptomyces Species from Schima wallichii as Potential Biocontrol Agents against Fungal Plant Pathogens

Open Access
|Aug 2016

References

  1. Adegboye M.F. and O.O. Babalola. 2012. Taxonomy and ecology of antibiotic producing actinomycetes. Afr. J. Agric. Res. 7: 2255–2261.10.5897/AJARX11.071
  2. Anderson A.S. and M.H.E. Wellington. 2001. The taxonomy of Streptomyces and related genera. Int. J. Syst. Evol. Microbiol. 51: 797–814.10.1099/00207713-51-3-797
  3. Anitha A. and M. Rabeeth. 2009. Control of Fusarium wilt of tomato by bioformulation of Streptomyces griseus in green house condition. Afr. J. Basic Appl. Sci. 1: 9–14.
  4. Ayuso-Sacido A. and O. Genilloud. 2005. New PCR primers for the screening of NRPS and PKS-I systems in actinomycetes: detection and distribution of these biosynthetic gene sequences in major taxonomic groups. Microb. Ecol. 49: 10–24.10.1007/s00248-004-0249-6
  5. Baltz R.H. 2006. Is our antibiotic pipeline unproductive because of starvation, constipation or lack of inspiration? J. Ind. Microbiol. Biotechnol. 33: 507–513.
  6. Berdi J. 1989. The discovery of new bioactive metabolites; screening and identification. Prog. Ind. Microbiol. 27: 3–25.
  7. Bredholdt H., O.A. Galatenko, K. Engelhardt, E. Fjaervik, L.P. Terekhova and S.B. Zotchev. 2007. Rare actinomycete bacteria from the shallow water sediments of the Trondheim fjord, Norway: isolation, diversity and biological activity. Environ. Microbiol. 9: 2756–2764.
  8. Brimner T.A. and G.J. Boland. 2003. A review of the non-target effects of fungi used to biologically control plant diseases. Agr. Eco- syst. Environ. 100: 3–16.10.1016/S0167-8809(03)00200-7
  9. Buchnan R.E. and N.E. Gibbons. 2000. In: Bergey’s manual of determinative bacteriology. 9th ed. Actinomycetales.
  10. Cao L., Z. Qiu, J. You, H. Tan and S. Zhou. 2005. Isolation and Characterization of endophytic Streptomycete antagonists of Fusarium wilt pathogen from surface-sterilized banana roots. FEMS Microbiol. Lett. 247: 147–152.10.1016/j.femsle.2005.05.00615935565
  11. Coombs J.T. and C.M.M. Franco. 2003. Isolation and identification of actinobacteria from surface sterilized wheat roots. Appl. Env. Microbiol. 69: 5603–5608.10.1128/AEM.69.9.5603-5608.200319499512957950
  12. Coombs J.T., P.P. Michelsen and C.M.M. Franco. 2004. Evaluation of endophytic actinobacteria as antagonists of Gaeumannomyces graminis var. tritici in wheat. Biol. Control. 29: 359–366.10.1016/j.biocontrol.2003.08.001
  13. Dahiya N., R. Tewari and G.S. Hoondal. 2006. Biotechnological aspects of chitinolytic enzymes. Appl. Microbiol. Biotechnol. 71: 773–782.10.1007/s00253-005-0183-716249876
  14. De-Araujo M.J., C.A. Silva and J.L. Azevedo. 2000. Isolation of endophytic actinomycetes from roots and leaves of Maize (Zea mays). Braz. Arch. Biol. Techn. 43: 447–451.10.1590/S1516-89132000000400016
  15. El-Tarabily K.A., A.H. Nassar, G.E. Hardy and K. Sivasitham- param. 2009. Plant growth promotion and biological control of Pythium aphanidermatum, a pathogen of cucumber, by endophytic actinomycetes. J. Appl. Microbiol. 106: 13–26.
  16. Evangelista-Martinez Z. 2014. Isolation and characterization of soil Streptomyces species as potential biological control agents against fungal plant Pathogens. World J. Microbiol. Biotechnol. 30: 1639–1647.10.1007/s11274-013-1568-x24310522
  17. Ezziyyani M., M.E. Requena, C. Egea-Gilabert and M.E. Candela. 2007. Biological control of Phytophthora root rot of pepper using Trichoderma harzianum and Streptomyces rochei in combination. J. Phytopathol. 155: 342–349.10.1111/j.1439-0434.2007.01237.x
  18. Felsenstein J. 1985. Confidence limits of phylogenies: An approach using the bootstrap. Evol. 39: 783–791.10.1111/j.1558-5646.1985.tb00420.x28561359
  19. Franco C.M. and L.E. Cautinho. 1991. Detection of novel secondary metabolites. Crit. Rev. Biotechnol. 11: 193–276.10.3109/073885591090691841760849
  20. Godfrey C.R.A. 1995. Agrochemicals from Natural Products. New York, Marcel Dekker.
  21. Gohel V., A. Singh, M. Vimal, P. Ashwini and H.S. Chhatpar. 2006. Bioprospecting and antifungal potential of chitinolytic Microorganisms. Afr. J. Biotechnol. 5: 54–72.
  22. Goodfellow M. and J.A. Haynes. 1984. Actinomycetes in marine sediments, pp. 453–472. In: Ortiz-Ortiz L., L.F. Bojalil and V. Yakoleff (eds). Biological, biochemical and biomedical aspects of actinomy- cetes. Academic Press, New York.10.1016/B978-0-12-528620-6.50039-2
  23. Graner G., P. Persson, J. Meijer and S. Alstrom. 2003. A study on microbial diversity in different cultivars of Brassica napus in relation to its wilt pathogen, Verticillium longisporum. FEMS Microbiol. Lett. 224: 269–276.
  24. Haggag W.M. and A.M. Abdall. 2011. Foliar application of Strep- tomyces aureofaciens improve protection in Mango against postharvest anthracnose and enhances fruit yield. Eur. J. Sci. Res. 63: 139–149.
  25. Hasegawa S., A. Meguro, M. Shimizu, T. Nishimura and H. Kunoh. 2006. Endophytic actinomycetes and their interactions with host plants. Actinomycetologica 20: 72–81.10.3209/saj.20.72
  26. Hayakawa M., Y. Momose, T. Yamazaki and H. Nonomura. 1996. A method for the selective isolation of Microtetraspora glauca and related fourspored actinomycetes from soil. J. Appl. Bacteriol. 80: 375–386.10.1111/j.1365-2672.1996.tb03232.x
  27. Hwang B.C., S.J. Ahn and S.S. Moon. 1994. Production, purification and antifungal activity of the antibiotic nucleoside, tubercidin, produced by Streptomyces violaceusniger. Can. J. Bot. 72: 480–485.
  28. Intra B., I. Mungsuntisuk, T. Nihira, Y. Igarashi and W. Panban- gred. 2011. Identification of actinomycetes from plant rhizospheric soils with inhibitory activity against Colletotrichum sp. the causative agent of anthracnose disease. BMC Res. Notes 4: 98.10.1186/1756-0500-4-98308031221457542
  29. Kayini A. and R.R. Pandey. 2010. Phyllosphere Fungi of Alnus nepalensis, Castanopsis hystrix and Schima walichii in a Subtropical Forest of North East India. J. Am. Sci. 6: 118–124.
  30. Khamna S., A. Yokota and S. Lumyong. 2009a. Actinomycetes isolated from medicinal plant rhizosphere soil: diversity and screening of antifungal compound, indole-3-acetic acid and siderophore production. World J. Microbiol. Biotechnol. 25: 649–655.
  31. Khamna S., A. Yokota, J.F. Peberdy and S. Lumyong. 2009b. Antifungal activity of Streptomyces sp. isolated from rhizosphere of Thai medicinal plants. Int. J. Integr. Biol. 6: 143–147.
  32. Kim T.U., S.H. Cho, J.H. Han, Y.M. Shin, H.B. Lee and S.B. Kim. 2012. Diversity and physiological properties of root endophytic actinobacteria in native herbaceous plants of Korea. J. Microbiol. 50: 50–57.10.1007/s12275-012-1417-x22367937
  33. Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111–120.10.1007/BF017315817463489
  34. Kizuka M., R. Enokita, K. Takahashi, Y. Okamoto, T. Otsuka, Y. Shigematsu, Y. Inoue and T. Okazaki. 2002. Studies on acti- nomycetes isolated from plant leaves: New plant growth inhibitors A-79197-2 and -3 from Dacthylosporangium aurantiacum SANK 61299. Actinomycetologica 16: 14–16.10.3209/saj.16_14
  35. Kumar V., A. Bharti, O. Gusain and G.S. Bisht. 2011. Scanning electron microscopy of Streptomyces without use of any chemical fixatives. Scanning 33: 1–4.10.1002/sca.2026121732388
  36. Kuster E. and S. Williams. 1964. Selection of media for isolation of Streptomycetes. Nat. 202: 928–929.10.1038/202928a014190108
  37. Maldonado M.C., C.E. Orosco, M.A. Gordillo and A.R. Navarro. 2010. In vivo and in vitro antagonism of Streptomyces sp. RO3 against Penicillium digitatum and Geotrichum candidum. Afr. J. Microbiol. Res. 4: 2451–2556.
  38. Mingma R., W. Pathom-aree, S. Trakulnaleamsai, A. Tham- chaipenet and K. Duangmal. 2014. Isolation of rhizospheric and roots endophytic actinomycetes from Leguminosae plant and their activities to inhibit soybean pathogen, Xanthomonas campestris pv. Glycine. World J. Microbiol. Biotechnol. 30: 271–280.
  39. Nimnoi P., N. Pongsilp and S. Lumyong. 2010. Endophytic actino- mycetes isolated from Aquilaria crassna Pierre ex Lec and screening of plant growth promoters production. World J. Microbiol. Biotech- nol. 26: 193–203.10.1007/s11274-009-0159-3
  40. Oskay M. 2009. Antifungal and antibacterial compounds from Streptomyces strains. Afr. J. Biotechnol. 8: 3007–3017.
  41. Passari A.K., Mishra V.K., Saikia R., Gupta V.K. and Singh B.P. 2015. Isolation, abundance and phylogenetic affiliation of endophytic actinomycetes associated with medicinal plants and screening for their in vitro antimicrobial biosynthetic potential. Front. Microbiol. 6: 273.
  42. Patil N.N., M.S. Waghmode, P.S. Gaikwad, M.H. Gajbhiye, A.B. Gunjal, N.N. Nawani and B.P. Kapadnis. 2014. Potential of Microbispora sp. V2 as biocontrol agent against Sclerotium rolfsii the causative agent of southern blight of Zea mays L (Baby corn) in vitro studies. Indian J. Exp. Biol. 52: 1147–1151.
  43. Qin S., J. Li, H.H. Chen, G.Z. Zhao and W.Y. Zhu. 2009. Isolation, diversity and antimicrobial activity of rare actinobacteria from medicinal plants of tropical rain forests in Xishuangbanna, China. Appl. Environ. Microbiol. 75: 6176–6186.10.1128/AEM.01034-09275305119648362
  44. Qin Z., V. Peng, X. Zhou, R. Liang, Q. Zhou, H. Chen, D.A. Hopwood, T. Keiser and Z. Deng. 1994. Development of a gene cloning system for Streptomyces hygroscopicus var yingchengensis, a producer of three useful antifungal compounds by elimination of three barriers to DNA transfer. J. Bacteriol. 176: 2090–2095.
  45. Raatikainen O.J., T.H. Paivinen and R.T. Tahvonen. 1994. HPLC separation and subsequent detection of aromatic heptaene polyenes in peat after treatment with Streptomyces griseoviridis. Pestic. Sci. 41: 149–154.10.1002/ps.2780410211
  46. Rothrock C.S. and D. Gottlieb. 1984. Role of antibiosis in antagonism of Streptomyces hygroscopicus var geldanus to Rhizoctonia solani in soil. Can. J. Microbiol. 30: 1440–1447.10.1139/m84-230
  47. Sardi P., M. Saracchi, S. Quaroni, B. Petrolini, G.E. Borgo- novi and S. Merli. 1992. Isolation of endophytic Streptomyces strains from surface-sterilized roots. Appl. Environ. Microbiol. 58: 2691–2693.10.1128/aem.58.8.2691-2693.199219584316348757
  48. Shimizu M., T. Furumai, Y. Igarashi, H. Onaka, T. Nishimura, R. Yoshida and H. Kunoh. 2001. Association of induced disease resistance of rhododendron seedlings with inoculation of Strepto- myces sp. R-5 and treatment with actinomycin D and amphotericin B to the tissue-culture medium. J. Anti. Biot. 54: 501–505.10.7164/antibiotics.54.50111513039
  49. Shimizu M., A. Meguro, S. Hasegawa, T. Nishimura and H. Kunoh H. 2006. Disease resistance induced by nonantagonistic endophytic Streptomyces sp. on tissue-cultured seedlings of rhododendron. J. Gen. Plant Pathol. 72: 351–354.10.1007/s10327-006-0305-9
  50. Shimizu M., S. Yazawa, Y. Ushijima. 2009. A promising strain of endophytic Streptomyces sp. for biological control of cucumber anthracnose. J. Gen. Plant Pathol. 75: 27–36.10.1007/s10327-008-0138-9
  51. Simone D.G.P., M.M. Rosana, R.R.C. Rosalie, N.L.M. Maria, H.B. Marta and B.V. Alane. 1999. Influence of growth medium in protease and pigment production in Streptomyces cyzneus. Mem. Inst. Oswwaldo. Cruz. 94: 173–177.10.1590/S0074-0276199900020000810224523
  52. Smith J., A. Putnam and M. Nair. 1990. In vitro control of Fusarium diseases of Asparagus officinalis L. with a Streptomyces or its polyene antibiotic, Faeriefungin. J. Agric. Food Chem. 38: 1729–1733.
  53. Stone J.K., C.W. Bacon and J.F. White. 2000. An overview of endophytic microbes: endophytism defined, pp. 3–29. In: Bacon C.W. and J.F. White (eds). Microbial endophytes. Marcel Dekker, Inc., New York.
  54. Strobel G.A. and B. Daisy. 2003. Bioprospecting for microbial endophytes and their natural products. Microbiol. Mol. Biol. Rev. 67: 491–502.10.1128/MMBR.67.4.491-502.200330904714665674
  55. Taechowisan T., C. Lu, Y. Shen and S. Lumyong. 2005. Secondary metabolites from endophytic Streptomyces aureofaciens CMUAc130 and their antifungal activity. Microbiology 151: 1691–1695.10.1099/mic.0.27758-015870476
  56. Taechowisan T. and S. Lumyong. 2003. Activity of endophytic actinomycetes from roots of Zingiber officinale and Alpinia galanga against phytopathogenic fungi. Ann. Microbiol. 53: 291–298.
  57. Taechowisan T., J.F. Peberdy and S. Lumyong. 2003. Isolation of endophytic actinomycetes from selected plants and their antifungal activity. World J. Microbiol. Biotechnol. 19: 381–385.
  58. Thompson J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin and D.G. Higgins. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analys is tools. Nucleic Acids Res. 24: 4876–4882.10.1093/nar/25.24.48761471489396791
  59. Trejo-Estrada S.L., A. Paszczynski and D.L. Crawford. 1998. Antibiotics and enzymes produced by biological agent Strepto- myces violaceusniger YCED-9. J. Ind. Microbiol. Biotechnol. 21: 81–90.10.1038/sj.jim.2900549
  60. Verma V.C., S.K. Gond, A. Kumar, A. Mishra, R.N. Kharwar and A.C. Gange. 2009. Endophytic actinomycetes from Azadirachta indica A. Juss.: isolation, diversity, and anti-microbial activity. Microb. Ecol. 57: 749–756.
  61. Zhao S., C.M. Du and C.Y. Tian. 2012. Suppression of Fusarium oxysporum and induced resistance of plants involved in the biocontrol of cucumber Fusarium wilt by Streptomyces bikiniensis HD-087. World J. Microbiol. Biotechnol. 28: 2919–2927.10.1007/s11274-012-1102-622806732
DOI: https://doi.org/10.5604/pjm-2016-319 | Journal eISSN: 2544-4646 | Journal ISSN: 1733-1331
Language: English
Page range: 319 - 329
Submitted on: Mar 28, 2015
Accepted on: Feb 2, 2016
Published on: Aug 26, 2016
Published by: Polish Society of Microbiologists
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year

© 2016 AJIT KUMAR PASSARI, VINEET KUMAR MISHRA, VIJAI KUMAR GUPTA, RATUL SAIKIA, BHIM PRATAP SINGH, published by Polish Society of Microbiologists
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

Volume 65 (2016): Issue 3 (August 2016)