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Genotyping and Clinicoepidemiological Characterization of Rotavirus Acute Gastroenteritis in Egyptian Children Cover

Genotyping and Clinicoepidemiological Characterization of Rotavirus Acute Gastroenteritis in Egyptian Children

Open Access
|Feb 2016

References

  1. Agócs M.M., F. Serhan, C. Yen, J.M. Mwenda, L.H. de Oliveira, N. Teleb, A. Wasley, P.R. Wijesinghe, K. Fox, J.E. Tate and others. 2014. WHO global RVA surveillance network: a strategic review of the first 5 years, 2008–2012. MMWR 25. 63(29): 634–637.
  2. Amer M.A., S.M. Abdel Salam, H.A. Ibrahim and M.A. Farag. 2007. Detection of group A Rota virus and characterization of G type among Egyptian children with diarrhea. Egyptian J. Med. Microbiol. 16(1): 123–132.
  3. Bahl R., P. Ray, S. Subodh, P. Shambharkar, M. Saxena, U. Para- shar, J. Gentsch, R. Glass, M.K. Bhan and Delhi Rotavirus Study Group. 2005. Incidence of severe rotavirus diarrhea in New Delhi, India, and G and P types of the infecting rotavirus strains. J. Infect. Dis. 192(Suppl 1): S114–S119.
  4. Cao D., M. Barro and Y. Hoshino. 2008. Porcine RVA bearing an aberrant gene stemming from an intergenic recombination of the NSP2 and NSP5 genes is defective and interfering. J. Virol. 82: 6073–6077.10.1128/JVI.00121-08
  5. Chouikha A., I. Fodha, S. Noomen, L. Bouzid, M. Mastouri,
  6. I. Peenze, M. De Beer, J. Dewar, A. Geyer, T. Sfar and others. 2007. Group A RVA strains circulating in the eastern center of Tunisia during a ten-year period (1995–2004). J. Med. Virol. 79(7): 1002–1008.
  7. DiStefano D.J., N. Kraiouchkine, L. Mallette, M. Maliga, G. Kul- nis, P.M. Keller, H.F. Clark and A.R. Shaw. 2005. Novel RVA VP7 typing assay using a one-step reverse transcriptase PCR protocol and product sequencing and utility of the assay for epidemiological studies and strain characterization, including serotype subgroup analysis. J. Clin. Microbiol. 43(12): 5876–5880.
  8. El-Senousy W.M. and E.M. El-Mahdy. 2009. Detection and genotyping of RVAes in water treatment plants of El-Dakahlia Governorate. Egyp. J. Biotechnol. 31: 25–34.
  9. El-Senousy W.M., Y.E. Shahein, A.B. Barakat, H.E. Ghanem, A.E. El-Hakim and S.M. Ameen. 2013. Molecular cloning and immunogenicity evaluation of RVA structural proteins as candidate vaccine. Int. J. Biol. Macromol. 59: 67–71.10.1016/j.ijbiomac.2013.04.003
  10. Endara P., G. Trueba, O.D. Solberg, S.J. Bates, K. Ponce, W. Ceval- los, J. Matthijnssens and J.N. Eisenberg. 2007. Symptomatic and subclinical infection with RVA P[8]G9, rural Ecuador. Emerg. Infect. Dis. 13(4): 574–580.
  11. Esona M.D., A. Geyer, N. Page, A. Trabelsi, I. Fodha, M. Aminu, V.A. Agbaya, B. Tsion, T.K. Kerin, G.E. Armah and others. 2009. Genomic characterization of human RVA G8 strains from the Afri-can RVA network: relationship to animal RVAes. J. Med. Virol. 81(5): 937–951.
  12. Espinola E., A. Amarilla, J. Arbiza and G.I Parra. 2008. Sequence and phylogenetic analysis of the VP4 gene of human RVAes isolated in Paraguay. Arch. Virol. 153(6): 1067–1073.
  13. Fang Z.Y., H. Yang, J. Qi, J. Zhang, L.W. Sun, J.Y. Tang, L. Ma, Z.Q. Du, A.H. He, J.P. Xie and others. 2002. Diversity of RVA strains among children with acute diarrhea in China: 1998–2000 surveillance study. J. Clin. Microbiol. 40: 1875–1878.10.1128/JCM.40.5.1875-1878.2002
  14. Gentsch J.R., R.I. Glass, P. Woods, V. Gouvea, M. Gorziglia, J. Flores, B.K. Das and M.K. Bhan. 1992. Identification of group A RVA gene 4 types by polymerase chain reaction. J. Clin Microbiol. 30(6): 1365–1373.10.1128/jcm.30.6.1365-1373.1992
  15. Gentsch J.R., A.R. Laird, B. Bielfelt, D.D. Griffin, K. Banyai, M. Ramachandran, V. Jain, N.A. Cunliffe, O. Nakagomi, C.D. Kirkwood and others. 2005. Serotype diversity and reassortment between human and animal RVA strains: implications for RVA vaccine programs. J. Infect. Dis. 192(Suppl 1): S146–159.10.1086/431499
  16. Gouvea V., R.I. Glass, P. Woods, K. Taniguchi, H.F. Clark, B. Forrester and Z.Y. Fang. 1990. Polymerase chain reaction amplification and typing of RVA nucleic acid from stool specimens. J. Clin. Microbiol. 28(2): 276–282.
  17. Gouvea V., L. de Castro, M.C. Timenetsky, H. Greenberg, and N. Santos. 1994. RVA serotype G5 associated with diarrhea in Brazilian children. J. Clin. Microbiol. 32(5): 1408–1409.
  18. Hashem S.E., A. Sahar, S.A. Shoman, S.A. Zaki and A.F. Elsayed. 2012. Isolation and molecular genotyping of group A RVA strains circulating among Egyptian infants and children. Austr. J. Basic App. Sci. 6(6): 361–367.
  19. Iturriza-Go’mara M., C. Wong, S. Blome, U. Desselberger and
  20. J. Gray. 2002. RVA subgroup characterization by restriction endonuclease digestion of a cDNA fragment of the VP6 gene. J. Virol. Meth. 105: 99–103.10.1016/S0166-0934(02)00087-3
  21. Kamel A.H., M.A. Ali, H.G. El Nady, A. de Rougemont, P. Pothier and G. Belliot. 2009. Predominance and circulation of enteric viruses in the region of Greater Cairo, Egypt. J. Clin. Microbiol. 47(4): 1037–1045.
  22. Kamel A.H., M.A. Ali, H.G. El-Nady, S. Aho and P. Pothier. 2010. Evidence of the co-circulation of enteric viruses in sewage and in the population of Greater Cairo. J. Appl. Microbiol. 108: 1620–1629.10.1111/j.1365-2672.2009.04562.x19840175
  23. Linhares A.C., T. Verstraeten, J. Wolleswinkel-van den Bosch, R. Clemens and T. Breuer. 2006. RVA serotype G9 is associated with more-severe disease in Latin America. Clin. Infect. Dis. 43(3): 312–314.
  24. Lovmar L., C. Fock, F. Espinoza, F. Bucardo, A.C. Syvänen and
  25. K. Bondeson. 2003. Microarrays for genotyping human group a RVA by multiplex capture and type-specific primer extension. J. Clin. Microbiol. 41(11): 5153–5158.
  26. Mandour R.A., A.A. Ghanem and S.M. El-Azab. 2013. Correlation between lead levels in drinking water and mothers’ breast milk: Dakahlia, Egypt. Environ. Geochem. Health 35(2): 251–256.
  27. Mansour A.M., M. El Koutby, M.M. El Barbary, W. Mohamed, S. Shehata, H. El Mohammady, M. Mostafa, M.S. Riddle, P.J. Sebeny, S.Y. Young and others. 2013. Enteric viral infections as potential risk factors for intussusception. J. Infect. Dev. Ctries. 15; 7(1): 28–35.
  28. Matson D.O., I.A. Abdel-Messih, C.D. Schlett, K. Bok, T. Wien- kopff, T.F. Wierzba, J.W. Sanders and R.W.Jr. Frenck. 2010. RVA Genotypes among hospitalized children in Egypt, 2000–2002. J. Infect. Dis. 202(S1): S263–265.
  29. Matthijnssens, J.1., M. Ciarlet, E. Heiman, I. Arijs, T. Delbeke, S.M. McDonald, E.A. Palombo, M. Iturriza-Gómara, P. Maes, J.T. Patton and others. 2008. Full genome-based classification of RVAes reveals a common origin between human Wa-Like and porcine RVA strains and human DS-1-like and bovine RVA strains. J. Virology 82: 3204–3219.10.1128/JVI.02257-07226844618216098
  30. Matthijnssens J., E. Heylen, M. Zeller, M. Rahman, P. Lemey and M. Van Ranst. 2010. Phylodynamic analyses of RVA genotypes G9 and G12 underscore their potential for swift global spread. Mol. Biol. Evol. 27(10): 2431–2436.
  31. Matthijnssens J., S. De Grazia, J. Piessens, E. Heylen, M. Zeller, G.M. Giammanco, K. Bányai, C. Buonavoglia, M. Ciarlet, V. Martella and others. 2011. Multiple reassortment and interspecies transmission events contribute to the diversity of feline, canine and feline/ canine-like human group A RVA strains. Infect. Genet. Evol. 11(6): 1396–1406.
  32. Matthijnssens J. and M. Van Ranst. 2012. Genotype constellation and evolution of group A RVAes infecting humans. Curr. Opin. Virol. 2(4): 426–433.
  33. Misra S., T.K. Sabui, S. Basu and N. Pal. 2007. A prospective study of RVA diarrhea in children under 1 year of age. Clinical Pediatrics 46(8): 683–688.10.1177/000992280730070017554140
  34. Mwenda J.M., K.M. Ntoto, A. Abebe, C. Enweronu-Laryea, I. Amina, J. Mchomvu, A. Kisakye, E.M. Mpabalwani, I. Pazva- kavambwa, G.E. Armah and others. 2010. Burden and epidemiology of RVA diarrhea in selected African countries: preliminary results from the African RVA Surveillance Network. J. Infect. Dis. 202(Suppl): S5–S11.10.1086/65355720684718
  35. Naficy A.B., R. Abu-Elyazeed, J.L. Holmes, M.R. Rao, S.J. Savarino, Y. Kim, T.F. Wierzba, L. Peruski, Y.J. Lee, J.R. Gentsch and others. 1999. Epidemiology of RVA diarrhea in Egyptian children and implications for disease control. Am. J. Epidemiol. 150(7): 770–777.
  36. Ortega O., N. El-Sayed, J.W. Sanders, Z. Abd-Rabou, L. Antil, J. Bresee, A. Mansour, I. Adib, I. Nahkla and M.S. Riddle. 2009. Cost-benefit analysis of a RVA immunization program in the Arab Republic of Egypt. J. Infect. Dis. 200: S92–98.10.1086/60505719817621
  37. Parashar U.D., C.J. Gibson, J.S. Bresse and R.I. Glass. 2006. RVA and severe childhood diarrhea. Emerg. Infect. Dis. 12: 304–306.10.3201/eid1202.050006337311416494759
  38. Plenge-Bönig A., N. Soto-Ramírez, W. Karmaus, G. Petersen, S. Davis and J. Forster. 2010. Breastfeeding protects against acute gastroenteritis due to RVA in infants. Euro. J. Ped. 169(12): 1471–1476.
  39. Potgieter N., M.C. de Beer, M.B. Taylor and A.D. Steele. 2010. Prevalence and diversity of RVA strains in children with acute diarrhea from rural communities in the Limpopo Province, South Africa, from 1998 to 2000. J. Infect. Dis. 202(Suppl): S148–55.
  40. Prameela K.K. and L.R. Vijaya. 2012. The importance of breastfeeding in rotaviral diarrhoeas. Mal. J. Nutrition. 18(1): 103–111.
  41. Prasetyo D., I.M. Sabaroedin, Y.S. Ermaya and Y. Soenarto. 2015. Association between severe dehydration in RVA diarrhea and exclusive breastfeeding among infants at dr. Hasan Sadikin General Hospital, Bandung, Indonesia. J. Trop. Med. ID 862578: 4.
  42. Radwan S.F., M.K. Gabr, S. El-Maraghi and A.F. El-Saifi. 1997. Serotyping of group A RVAes in Egyptian neonates and infants less than 1 year old with acute diarrhea. J. Clin. Microbiol. 35(11): 2996–2998.
  43. Rahman M., R. Sultana, G. Podder, A.S.G. Faruque, J. Mat- thijnssens, K. Zaman, R.F. Breiman, D.A. Sack, M. Van Ranst and T. Azim. 2005. Typing of human RVA serotypes: Nucleotide mismatches between the VP7 gene and primer are associated with genotyping failure. Virol. J. 2: 24–29.10.1186/1743-422X-2-24107996215790408
  44. Santos N. and Y. Hoshino. 2005. Global distribution of RVA serotypes/genotypes and its implication for the development and implementation of an effective RVA vaccine. Rev. Med. Virol. 15: 29–5610.1002/rmv.44815484186
  45. Santos N., E.M. Volotao, C.C. Soares, G.S. Campos, S.I. Sardi and Y. Hoshino. 2005. Predominance of RVA genotype G9 during the 1999, 2000, and 2002 seasons among hospitalized children in the city of Salvador, Bahia, Brazil: Implications for future vaccine strategies. J. Clin. Microbiol. 43: 4064–4069.
  46. Santos S.M.R., T.L. Ferreira, V.S. Quintal, S.B. Carbonare and M. Tino-De-Franco. 2013. Milk from Brazilian women presents secretory IgA antibodies and neutralizes RVA G9P[5]. J. Ped. 89(5): 510–513.
  47. Schael I.P., R. González and B. Salinas. 2009. Severity and age of RVA diarrhea, but not socioeconomic conditions, are associated with RVA seasonality in Venezuela. J. Med. Virol. 81(3): 562–567.
  48. Tate J.E., A.H. Burton, C. Boschi-Pinto, A.D. Steele, J. Duque and U.D. Parashar. 2012. WHO-coordinated Global RVA Surveillance Network. 2008 estimate of worldwide RVA-associated mortality in children younger than 5 years before the introduction of universal RVA vaccination programmes: a systematic review and meta-analy- sis. Lancet Infect. Dis. 12(2): 136–41.
  49. Than V.T. and W. Kim. 2013. Prevalence of rotavirus genotypes in South Korea in 1989–2009: implications for a nationwide rotavirus vaccine program. Korean J. Pediatr. 56(11): 465–473.10.3345/kjp.2013.56.11.465385987824348658
  50. Unicomb L.E., G. Podder, J.R. Gentsch, P.A. Woods, K.Z. Hasan, A.S. Faruque, M.J. Albert and R.I. Glass. 1999. Evidence of high-frequency genomic reassortment of group A RVA strains in Bangladesh: emergence of type G9 in 1995. J. Clin. Microbiol. 37(6): 1885–1891.
  51. Vainio K., S.A. Nordbø, G. Njølstad, G. Størvold. H. Døllner, C. Midgaard, F.J. Bosse, A.G. Rognlien, A. Rojahn, K.O. Wathne and others. 2009. Detection and characterization of group A RVAes in children hospitalized with acute gastroenteritis in Norway, 2006–2008. J. Med. Virol. 81(10): 1839–1844.
  52. Van Damme P., C. Giaquinto, M. Maxwell, P. Todd, M. Van der Wielen on behalf of the REVEAL Study Group. 2007. Distribution of RVA genotypes in Europe 2004–2005 the: REVEAL Study. J. Infect. Dis. 195(Suppl 1): S17–25.10.1086/51671517387648
  53. van Zyl W.B., N.A. Page, W.O. Grabow, A.D. Steele and M.B. Taylor. 2006. Molecular epidemiology of group A RVAes in water sources and selected raw vegetables in southern Africa. Appl. Environ. Microbiol. 72(7): 4554–4560.
  54. Vizzi E., O. Piñeros, G.G. González, J.L. Zambrano, J.E. Ludert and F. Liprandi. 2011. Genotyping of human RVAes circulating among children with diarrhea in Valencia, Venezuela. J. Med. Virol. 83(12): 2225–2232.
  55. Wobudeya E., H. Bachou, C.K. Karamagi, J.N. Kalyango, E. Mutebi, H. Wamani. 2011. Breastfeeding and the risk of RVA diarrhea in hospitalized infants in Uganda: a matched case control study. BMC Pediatrics. 11(17): 1–7
  56. World Health Organization (WHO). 2009. RVA vaccines: an update. World Health Organization. Weekly Epidemiological Record. 84: 533–540.
DOI: https://doi.org/10.5604/17331331.1227669 | Journal eISSN: 2544-4646 | Journal ISSN: 1733-1331
Language: English
Page range: 433 - 442
Submitted on: Nov 27, 2015
Accepted on: Apr 18, 2016
Published on: Feb 28, 2016
Published by: Polish Society of Microbiologists
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year

© 2016 NIVEEN SAUDY, WALAA OTHMAN ELSHABRAWY, AHMED MEGAHED, MONA F. FOAD, ALY F. MOHAMED, published by Polish Society of Microbiologists
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.