Have a personal or library account? Click to login
Phylogenetic analysis of the king cobra, Ophiophagus hannah in Thailand based on mitochondrial DNA sequences Cover

Phylogenetic analysis of the king cobra, Ophiophagus hannah in Thailand based on mitochondrial DNA sequences

Open Access
|Feb 2017

References

  1. 1. Chanhome L, Cox MJ, Wilde H, Jintakoon P, Chaiyabutr N, Sitprija V. Venomous snakebite in Thailand. I: Medically important snakes. Mil Med. 1998; 163: 310-7.10.1093/milmed/163.5.310
  2. 2. He YY, Lee WH, Zhang Y. Cloning and purification of α-neurotoxins from king cobra (Ophiophagus hannah). Toxicon. 2004; 44:295-303.10.1016/j.toxicon.2004.06.00315302536
  3. 3. Wong KL, Wang J, But PPH., Shaw PC. Application of cytochrome b DNA sequences for the authentication of endangered snake species. Forensic Sci Inter. 2004; 139:49-55.10.1016/j.forsciint.2003.09.01514687773
  4. 4. Ferri G, Alu M, Corradini B, Licata M, Beduschi G. Species identification through DNA “barcodes”. Genet Test Mol Biomarkers. 2009; 13:421-6.10.1089/gtmb.2008.014419405876
  5. 5. Pook CE, McEwing R. Mitochondrial DNA sequences from dried snake venom: a DNA barcoding approach to the identification of venom samples. Toxicon. 2005; 46:711-5.10.1016/j.toxicon.2005.07.00516157361
  6. 6. Rastogi G, Dharne MS, Walujkar S, Kumar A, Patole MS, Shouche YS. Species identification and authentication of tissues of animal origin using mitochondrial and nuclear markers. Meat Sci. 2007; 76:666-74.10.1016/j.meatsci.2007.02.00622061243
  7. 7. Arif IA, Khan HA, Al Sadoon M, Shobrak M. Limited efficiency of universal mini-barcode primers for DNA amplification from desert reptiles, birds, and mammals. Genet Mol Res. 2011; 10:3559-64.10.4238/2011.October.31.322057991
  8. 8. Singh CS, Gaur A, Sreenivas A, Singh L. Species identification from dried snake venom. J Forensic Sci. 2012; 57:826-8.10.1111/j.1556-4029.2011.02049.x22268640
  9. 9. Meusnier I, Singer GAC, Landry J-F, Hickey DA., Hebert PDN, Hajibabaei M. A universal DNA minibarcode for biodiversity analysis. BMC Genomics. 2008; 9:214-7.10.1186/1471-2164-9-214239664218474098
  10. 10. Khan HA, Arif IA, Al Homaidan AA, Al Farhan AH. Application of 16S rRNA, cytochrome b and control region sequences for understanding the phylogenetic relationships in Oryx species. Genet Mol Res. 2008; 7:1392-7.10.4238/vol7-4gmr51419224456
  11. 11. Linacre A, Tobe SS. An overview to the investigative approach to species testing in wildlife forensic science. Investig Genet. 2011; 2:1-9.10.1186/2041-2223-2-2303269121232099
  12. 12. Ashton KG, de Queiroz A. Molecular systematics of the western rattlesnake, Crotalus viridis (Viperidae), with comments on the utility of the D-loop in phylogenetics studies of snakes. Mol Phylogenet Evol. 2001; 21:176-89.10.1006/mpev.2001.101311697914
  13. 13. Nian C, Xiao-Ping L. Sequencing and analysis of the complete mitochondrial genome of the King Cobra, Ophiophagus hannah (Serpents: Elapidae). Yi Chuan. 2010; 32:719-25.10.3724/SP.J.1005.2010.00719
  14. 14. Wuster W, Peppin L, Pook CE, Walker DE. A nesting of vipers: phylogeny and historical biogeography of the Viperidae (Squamata: Serpentes). Mol Phylogenet Evol. 2008; 49:445-59.10.1016/j.ympev.2008.08.01918804544
  15. 15. Lertwatcharasarakul P, Thongtip N, Boonnontae S, Wajjwalku W, Mahasawankul S, Angkawanish T, et al. Haplotypes of Asian elephant (Elephas maximus) in Thailand based on cytochrome b gene. Kamphaengsaen Acad J. 2003; 1:33-9.
  16. 16. Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol. 2007; 24:1596-9.10.1093/molbev/msm09217488738
  17. 17. Dubey B, Meganathan PR, Haque I. DNA minibarcoding: An approach for forensic identification of some endangered Indian snake species. Forensic Sci. Int. Genet. 2011; 5:181-4.10.1016/j.fsigen.2010.03.00120457097
  18. 18. Nicolas V, Schaeffer B, Missoup AD, Kennis J, Colyn M, Denys C, et al. Assessment of three mitochondrial genes (16S, Cytb, CO1) for identifying species in the Praomyini tribe (Rodentia: Muridae). PLoS One. 2012; 7:e36586.10.1371/journal.pone.0036586334491222574186
  19. 19. Powell RL, Reyes SR, Lannutti DI. Molecular barcoding, DNA from snake venom, and toxinological research: considerations and concerns. Toxicon. 2006; 48:1095-7.10.1016/j.toxicon.2006.07.03516965799
  20. 20. Slowinski J, Keogh JS. Phylogenetic relationships of elapid snakes based on cytochrome b mtDNA sequences. Mol Phylogenet Evol. 2000; 15:157-64.10.1006/mpev.1999.072510764543
  21. 21. Amer SAM, Shobrak M. The efficiency of mitochondrial DNA markers in constructing genetic relationship among Oryx species. Afr J Biotechnol. 2011; 10: 4581-5.
  22. 22. Meenakshi K, Suraj T, Bhagwati SS, Sujith VG, Santhoshkumar K, Sanil G. Molecular resolution of four Fejervarya species from western Ghats (India) with their intrageneric phylogeny based on COI, Cyt B, 12S and 16S rRNA genes. Asian J Exp Biol Sci. 2010; 1:782-6.
  23. 23. Barker FK, Benesh MK, Vandergon AJ, Lanyon SM. Contrasting evolutionary dynamics and information content of the avian mitochondrial control region and ND2 gene. PLoS One. 2012; 7:e46403.10.1371/journal.pone.0046403346532623071562
  24. 24. Huang S, He S, Peng Z, Zhao K, Zhao E. Molecular phylogeography of endangered sharp-snouted pitviper (Deinagkistrodon acutus; Reptilia, Viperidae) in Mainland China. Mol Phylogenet Evol. 2007; 44: 942-52.10.1016/j.ympev.2007.05.01917643319
  25. 25. Pyron RA, Burbrink FT, Colli GR, de Oca AN, Vitt LJ, Kuczynski CA, et al. The phylogeny of advanced snakes (Colubroidea), with discovery of a new subfamily and comparison of support methods for likelihood trees. Mol Phylogenet Evol. 2010; 58: 329-42. 10.1016/j.ympev.2010.11.00621074626
DOI: https://doi.org/10.5372/1905-7415.0802.289 | Journal eISSN: 1875-855X | Journal ISSN: 1905-7415
Language: English
Page range: 269 - 274
Published on: Feb 4, 2017
Published by: Chulalongkorn University
In partnership with: Paradigm Publishing Services
Publication frequency: 6 issues per year

© 2017 Sunutcha Suntrarachun, Lawan Chanhome, Montri Sumontha, published by Chulalongkorn University
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.