Table 1
Biopython Google Summer of Code project list.
| 2009 | |
| Project A** | Automated the searching, downloading, and parsing of specimens’ geographic location records. |
| Project B* | Parsing, generation, and manipulation of phyloXML files to store information about phylogenetic trees. |
| 2010 | |
| Project C* | Improved data-mining biomolecular structure databases (Bio. PDB) by adding polar hydrogens to macromolecule structures and interfaces for model validation. |
| 2011 | |
| Project D** | Added a transparent Python plug-in interface to Mocapy++, a machine learning toolkit for parameter learning and inference in dynamic Bayesian networks. |
| Project E** | Developed a Python interface to Mocapy++ to enable biomolecular structure prediction and simulation. |
| Project F*** | Added large-scale protein analysis capabilities to Bio.PDB and extended it to operate with protein-DNA and protein-RNA complexes (Enhancements to Project C). |
| 2012 | |
| Project G** | Added capabilities to represent sequence variation objects, convert them to and from common human and file representations, and provide manipulations on them. |
| Project H* | Developed a standard Python interface called SearchIO that supports pairwise sequence search file input/output file formats used by a variety of bioinformatics tools. |
| 2013 | |
| Project I* | Added phylogenetic tree construction algorithms and functions for the consensus of multiple trees. |
| Project J* | Extended Biopython to support new data types and analyses for codon alignment. |
[i] Note. *integrated **not integrated ***ongoing integration.