Figure 1
Typical analysis results from R/qtl. A: LOD curves across the genome, measuring association between phenotype and genotype across, and B: Association between genotype and phenotype at the marker with the strongest association. The data are from [1]; panel B was created using the R package beeswarm.
Figure 2
Numbers of lines of code in released versions of R/qtl over time. (Yellow and blue correspond to R and C code, respectively; pink is for the R documentation files.)