MFSE (MicroFossil Segmentation Editor): A GUI for Editing 3D Segmentations of Foraminifera Derived from X-Ray µCT
By: Michael Siccha and Dave Schmidt
References
- Kucera M. Chapter six planktonic foraminifera as tracers of past oceanic environments. Developments in Marine Geology. 2007;1:213–262. DOI: 10.1016/S1572-5480(07)01011-1
- Titschack J, Baum D, Matsuyama K, Boos K, Färber C, Kahl WA, et al. Ambient occlusion–A powerful algorithm to segment shell and skeletal intrapores in computed tomography data. Computers & Geosciences. 2018;115:75–87. DOI: 10.1016/j.cageo.2018.03.007
- Altman Y. findjobj V1.53 [Internet]. MATLAB Central File Exchange; 2019 [cited 3. December 2025]. Available from:
https://de.mathworks.com/matlabcentral/fileexchange/14317-findjobj-find-java-handles-of-matlab-graphic-objects . - Kroon D-J. GIPL Toolbox V1.0 [Internet]. MATLAB Central File Exchange; 2007 [cited September 26, 2023]. Available from:
https://www.mathworks.com/matlabcentral/fileexchange/16407-gipl-toolbox . - Schalk S. Voxel Image [Internet]. MATLAB Central File Exchange; 2011 [cited September 26, 2023]. Available from:
https://www.mathworks.com/matlabcentral/fileexchange/30374-voxel-image . - Legland D. MatGeom: A toolbox for geometry processing with MATLAB. SoftwareX. 2025;29:
101984 . DOI: 10.1016/j.softx.2024.101984 - Muir D. PARFOR progress monitor (progress bar) v3 [Internet] GitHub; 2025 [cited 24, November 2025]. Available from:
https://github.com/DylanMuir/ParforProgMon . - Hoelzer S. progressbar [Internet] MATLAB Central File Exchange; 2025 [cited 24, November 2025]. Available from:
https://de.mathworks.com/matlabcentral/fileexchange/6922-progressbar . - Koblick D. rotVecAroundArbAxis [Internet] MATLAB Central File Exchange; 2025 [cited 9, December 2025]. Available from:
https://de.mathworks.com/matlabcentral/fileexchange/49916-rotvecaroundarbaxis-unitvec2rotate-rotationaxisunitvec-theta . - Axis Maps/Woodruff A. colorbrewer [Internet] GitHub; 2003 [cited 24, November 2025]. Available from:
https://github.com/axismaps/colorbrewer/?tab=Apache-2.0-1-ov-file .
DOI: https://doi.org/10.5334/jors.662 | Journal eISSN: 2049-9647
Language: English
Page range: 42 - 42
Submitted on: Dec 22, 2025
Accepted on: May 12, 2026
Published on: Jun 3, 2026
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
Keywords:
© 2026 Michael Siccha, Dave Schmidt, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.