References
- 1Lu, C, Yang, Y, Zhao, R, Hua, B, Xu, C, Yan, Z, Sun, N and Qian, R. Role of circadian gene Clock during differentiation of mouse pluripotent stem cells. Protein Cell. 2016; 7: 820–832. DOI: 10.1007/s13238-016-0319-9
- 2Paulose, JK, Rucker, EB,
III and Cassone, VM. Toward the Beginning of Time: Circadian Rhythms in Metabolism Precede Rhythms in Clock Gene Expression in Mouse Embryonic Stem Cells. PLoS One. 2012; 7. DOI: 10.1371/journal.pone.0049555 - 3Duez, H and Staels, B. Rev-erb-α: an integrator of circadian rhythms and metabolism. J Appl Physiol. 2009; 107: 1972–80. DOI: 10.1152/japplphysiol.00570.2009
- 4Malik, A, Kondratov, RV, Jamasbi, RJ and Geusz, ME. Circadian Clock Genes Are Essential for Normal Adult Neurogenesis, Differentiation, and Fate Determination. vPLoS One. 2015; 10. DOI: 10.1371/journal.pone.0139655
- 5Vallone, D, Lahiri, K, Dickmeis, T and Foulkes, NS. Start the clock! Circadian rhythms and development. Dev Dyn. 2007; 236(1): 142–55. DOI: 10.1002/dvdy.20998
- 6Akle, V, Stankiewicz, AJ, Kharchenko, V, Yu, L, Kharchenko, PV and Zhdanova, IV. Circadian Kinetics of Cell Cycle Progression in Adult Neurogenic Niches of a Diurnal Vertebrate. J Neurosci. 2015; 37: 3222–16.
- 7Zhu, Z, Hua, B, Xu, L, Yuan, G, Li, E, Li, X, Sun, N, Yan, Z, Lu, C and Qian, R. CLOCK promotes 3T3-L1 cell proliferation via Wnt signaling. IUBMB Life. 2016; 68: 557–68. DOI: 10.1002/iub.1512
- 8Yagita, K, Horie, K, Koinuma, S, Nakamura, W, Yamanaka, I, Urasaki, A, Shigeyoshi, Y, Kawakami, K, Shimada, S, Takeda, J and Uchiyama, Y. Development of the circadian oscillator during differentiation of mouse embryonic stem cells in vitro. Proc Natl Acad Sci U S A. 2010; 107: 3846–51. DOI: 10.1073/pnas.0913256107
- 9Bell-Pedersen, D, Cassone, VM, Earnest, DJ, Golden, SS, Hardin, PE, Thomas, TL and Zoran, MJ. Circadian rhythms from multiple oscillators: lessons from diverse organisms. Nat Rev Gene. 2005; 6: 544–56. DOI: 10.1038/nrg1633
- 10Edwards, KD, Akman, OE, Knox, K, Lumsden, PJ, Thomson, AW, Brown, PE, Pokhilko, A, Kozma-Bognar, L, Nagy, F, Rand, DA and Millar, AJ. Quantitative analysis of regulatory flexibility under changing environmental conditions. Molecular Systems Biology. 2010; 6: 424. DOI: 10.1038/msb.2010.81
- 11Monzo, HJ, Park, TI, Montgomery, JM, Faull, RL, Dragunow, M and Curtis, MA. A method for generating high-yield neuronal cultures from P19 embryonal carcinoma cells. J Neurosci Methods. 2012; 204: 87–103.
- 12Babuška, V, Kulda, V, Houdek, Z, Pešta, M, Cendelín, J, Zech, N, Pacherník, J, Vožeh, F, Uher, P and Králíčková, M. Characterization of P19 cells during retinoic acid induced differentiation. Prague Med Rep. 2010; 111: 289–99.
- 13McBurney, MW. P19 embryonal carcinoma cells. Int. J. Dev. Biol. 1993; 37: 135–140.
- 14Matsu-Ura, T, Dovzhenok, A, Aihara, E, Rood, J, Le, H, Ren, Y, Rosselot, AE, Zhang, T, Lee, C, Obrietan, K, Montrose, MH, Lim, S, Moore, SR and Hong, CI. Intercellular Coupling of the Cell Cycle and Circadian Clock in Adult Stem Cell Culture. Mol Cell. 2016; 64: 900–912. DOI: 10.1016/j.molcel.2016.10.015
- 15Vega-Naredo, I, Loureiro, R, Mesquita, KA, Barbosa, IA, Tavares, LC, Branco, AF, Erickson, JR, Holy, J, Perkins, EL, Carvalho, RA and Oliveira, PJ. Mitochondrial metabolism directs stemness and differentiation in P19 embryonal carcinoma stem cells. Cell Death Differ. 2014; 21: 1560–74. DOI: 10.1038/cdd.2014.66
- 16Kim, BS, Lee, CH, Chang, GE, Cheong, E and Shin, I. A potent and selective small molecule inhibitor of sirtuin 1 promotes differentiation of pluripotent P19 cells into functional neurons. Sci Rep. 2016; 29:
34324 . DOI: 10.1038/srep34324 - 17Grechez-Cassiau, A, Panda, S, Lacoche, S, Teboul, M, Azmi, S, Laudet, V, Hogenesch, JB, Taneja, R and Delaunay, FJ. The transcriptional repressor STRA13 regulates a subset of peripheral circadian outputs. J Biol Chem. 2004; 279: 1141–50. DOI: 10.1074/jbc.M305369200
- 18Dierickx, P, Vermunt, MW, Muraro, MJ, Creyghton, MP, Doevendans, PA, van Oudenaarden, A, Geijsen, N and Van Laake, LW. Circadian networks in human embryonic stem cell-derived cardiomyocytes. EMBO Rep. 2017; 18: 1199–1212. DOI: 10.15252/embr.201743897
- 19Boudjelal, M, Taneja, R, Matsubara, S, Bouillet, P, Dolle, P and Chambon, P. Overexpression of Stra13, a novel retinoic acid-inducible gene of the basic helix-loop-helix family, inhibits mesodermal and promotes neuronal differentiation of P19 cells. Genes Dev. 1997; 11: 2052–65. DOI: 10.1101/gad.11.16.2052
- 20Wang, C, Xia, C, Bian, W, Liu, L, Lin, W, Chen, YG, Ang, SL and Jing, N. Cell Aggregation-induced FGF8 Elevation Is Essential for P19 cell Neural Differentiation. Mol Biol Cell. 2016; 17: 3075–84. DOI: 10.1091/mbc.e05-11-1087
- 21Gachon, F, Nagoshi, E, Brown, SA, Ripperger, J and Schibler, U. The mammalian circadian timing system: from gene expression to physiology. Chromosoma. 2004; 113: 103–12. DOI: 10.1007/s00412-004-0296-2
- 22Leloup, JC and Goldbeter, A. Toward a detailed computational model for the mammalian circadian clock. Proc Natl Acad Sci U S A. 2003; 100: 7051–6. DOI: 10.1073/pnas.1132112100
- 23Huang, HP, Liu, M, El-Hodiri, HM, Chu, K, Jamrich, M and Tsai, MJ. Regulation of the pancreatic islet-specific gene BETA2 (neuroD) by neurogenin 3. Mol Cell Biol. 2000; 20: 3292–307. DOI: 10.1128/MCB.20.9.3292-3307.2000
- 24Bellet, MM, Nakahata, Y, Boudjelal, M, Watts, E, Mossakowska, DE, Edwards, KA, Cervantes, M, Astarita, G, Loh, C, Ellis, JL, Vlasuk, GP and Sassone-Corsi, P. Pharmacological modulation of circadian rhythms by synthetic activators of the deacetylase SIRT1. Proc Natl Acad Sci U S A. 2013; 110: 3333–8. DOI: 10.1073/pnas.1214266110
- 25Gibbs, JE, Blaikley, J, Beesley, S, Matthews, L, Simpson, KD, Boyce, SH, Farrow, SN, Else, KJ, Singh, D, Ray, DW and Loudon, AS. The nuclear receptor REV-ERBα mediates circadian regulation of innate immunity through selective regulation of inflammatory cytokines. Proc Natl Acad Sci U S A. 2012; 109: 582–7. DOI: 10.1073/pnas.1106750109
- 26Orozco-Solis, R and Sassone-Corsi, P. Circadian clock: linking epigenetics to aging. Curr Opin Genet Dev. 2014; 26: 66–72. DOI: 10.1016/j.gde.2014.06.003
- 27Goldsmith, CS and Bell-Pedersen, D. Diverse roles for MAPK signaling in circadian clocks. Adv Genet. 2013; 84: 1–39. DOI: 10.1016/B978-0-12-407703-4.00001-3
- 28Masri, S. Sirtuin-dependent clock control: new advances in metabolism, aging and cancer. Curr Opin Clin Nutr Metab Care. 2015; 18: 521–7. DOI: 10.1097/MCO.0000000000000219
- 29Asher, G, Gatfield, D, Stratmann, M, Reinke, H, Dibner, C, Kreppel, F, Mostoslavsky, R, Alt, FW and Schibler, U. SIRT1 regulates circadian clock gene expression through PER2 deacetylation. Cell. 2008; 134: 317–28.
- 30Nakahata, Y, Kaluzova, M, Grimaldi, B, Sahar, S, Hirayama, J, Chen, D, Guarente, LP and Sassone-Corsi, P. The NAD+-dependent deacetylase SIRT1 modulates CLOCK-mediated chromatin remodeling and circadian control. Cell. 2008; 134: 329–40.
- 31Cai, Y, Xu, L, Xu, H and Fan, X. SIRT1 and Neural Cell Fate Determination. Mol Neurobiol. 2016; 53: 2815–2825. DOI: 10.1007/s12035-015-9158-6
- 32Jeong, SG and Cho, GW. The tubulin deacetylase sirtuin-2 regulates neuronal differentiation through the ERK/CREB signaling pathway. Biochem Biophys Res Commun. 2017; 482: 182–187. DOI: 10.1016/j.bbrc.2016.11.031
- 33Odaka, H, Numakawa, T, Yoshimura, A, Nakajima, S, Adachi, N, Ooshima, Y, Inoue, T and Kunugi, H. Chronic glucocorticoid exposure suppressed the differentiation and survival of embryonic neural stem/progenitor cells: Possible involvement of ERK and PI3K/Akt signaling in the neuronal differentiation. Neurosci Res. 2016; 113: 28–36. DOI: 10.1016/j.neures.2016.07.002
- 34Chuang, JH, Tung, LC and Lin, Y. Neural differentiation from embryonic stem cells in vitro: An overview of the signaling pathways. World J Stem Cells. 2015; 7: 437–47. DOI: 10.4252/wjsc.v7.i2.437
- 35Dierickx, P, Van Laake, LW and Geijsen, N. Circadian clocks: from stem cells to tissue homestasis and regenaration. EMBO Rep. 2018; 19: 18–28. DOI: 10.15252/embr.201745130
- 36Kowalska, E, Moriggi, E, Bauer, C, Dibner, C and Brown, SA. The circadian clock starts ticking at a developmentally early stage. J. Biol. Rhythms. 2010; 25: 442–449. DOI: 10.1177/0748730410385281
- 37Vitaterna, MH, King, DP, Chang, AM, Kornhauser, JM, Lowrey, PL, McDonald, JD, Dove, WF, Pinto, LH, Turek, FW and Takahashi, JS. Mutagenesis and mapping of a mouse gene, Clock, essential for circadian behavior. Science. 1994; 264(5159): 719–25. DOI: 10.1126/science.8171325
- 38Boudjelal, M, Mosskowsaka, DE and Farrow, S. Interlink between Nuclear Receptors, Posttranslational Modifications and the Biological Clock in Health and Diseases. J Carcinogene Mutagene. 2013; S14: 2–16.
- 39Heo, J, Lim, J, Lee, S, Jeong, J, Kang, H, Kim, YH, Kang, JW, Yu, HY, Jeong, EM, Kim, K, Kucia, M and Waigel, SJ. Sirt1 Regulates DNA Methylation and Differentiation Potential of Embryonic Stem Cells by Antagonizing Dnmt3l. Cell Reports. 2017; 18: 1930–1945. DOI: 10.1016/j.celrep.2017.01.074
