
Sample Identifiers and Metadata to Support Data Management and Reuse in Multidisciplinary Ecosystem Sciences
By: Joan E. Damerow, Charuleka Varadharajan, Kristin Boye, Eoin L. Brodie, Madison Burrus, K. Dana Chadwick, Robert Crystal-Ornelas, Hesham Elbashandy, Ricardo J. Eloy Alves, Kim S. Ely, Amy E. Goldman, Ted Haberman, Valerie Hendrix, Zarine Kakalia, Kenneth M. Kemner, Annie B. Kersting, Nancy Merino, Fianna O'Brien, Zach Perzan, Emily Robles, Patrick Sorensen, James C. Stegen, Ramona L. Walls, Pamela Weisenhorn, Mavrik Zavarin and Deborah Agarwal
References
- Avraham, S, Tung, C-W, Ilic, K, Jaiswal, P, Kellogg, EA, McCouch, S, Pujar, A, Reiser, L, Rhee, SY, Sachs, MM, Schaeffer, M, Stein, L, Stevens, P, Vincent, L, Zapata, F and Ware, D. 2008. The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic acids research, 36(Database issue): D449–54. DOI: 10.1093/nar/gkm908
- Ball-Damerow, JE, Brenskelle, L, Barve, N, Soltis, PS, Sierwald, P, Bieler, R, LaFrance, R, Ariño, AH and Guralnick, RP. 2019. Research applications of primary biodiversity databases in the digital age. PloS one, 14(9):
e0215794 . DOI: 10.1371/journal.pone.0215794 - Beck, MW, O’Hara, C, Stewart Lowndes, JS, Mazor, RD, Theroux, S, Gillett, DJ, Lane, B and Gearheart, G. 2020. The importance of open science for biological assessment of aquatic environments. PeerJ, 8:
e9539 . DOI: 10.7717/peerj.9539 - Biological and Environmental Research Advisory Committee (BERAC). 2017. Grand Challenges for Biological and Environmental Research: Progress and Future Vision 2017: A Report from the Biological and Environmental Research Advisory Committee (No. DOE/SC–0190). BERAC Subcommittee on Grand Research Challenges for Biological and Environmental Research. Available at
https://genomicscience.energy.gov/BERfiles/BERAC-2017-Grand-Challenges-Report.pdf . - Buttigieg, PL, Pafilis, E, Lewis, SE, Schildhauer, MP, Walls, RL and Mungall, CJ. 2016. The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation. Journal of biomedical semantics, 7(1): 57. DOI: 10.1186/s13326-016-0097-6
- Chadwick, KD, Brodrick, PG, Grant, K, Goulden, T, Henderson, A, Falco, N, Wainwright, H, Williams, KH, Bill, M, Breckheimer, I, Brodie, EL, Steltzer, H, Williams, CFR, Blonder, B, Chen, J, Dafflon, B, Damerow, J, Hancher, M, Khurram, A, Lamb, J, Lawrence, CR, McCormick, M, Musinsky, J, Pierce, S, Polussa, A, Hastings Porro, M, Scott, A, Singh, HW, Sorensen, PO, Varadharajan, C, Whitney, B and Maher, K. 2020. Integrating airborne remote sensing and field campaigns for ecology and Earth system science. Methods in ecology and evolution/British Ecological Society, 1: 83. DOI: 10.1111/2041-210X.13463
- Chase, JH, Bolyen, E, Rideout, JR and Caporaso, JG. 2016. cual-id: Globally Unique, Correctable, and Human-Friendly Sample Identifiers for Comparative Omics Studies. mSystems, 1(1): e00010–15. DOI: 10.1128/mSystems.00010-15
- Conze, R, Lorenz, H, Ulbricht, D, Elger, K and Gorgas, T. 2017. Utilizing the International Geo Sample Number Concept in Continental Scientific Drilling During ICDP Expedition COSC-1. Data Science Journal, 16: 2. DOI: 10.5334/dsj-2017-002
- Cordeiro, AL, Norby, RJ, Andersen, KM, Valverde-Barrantes, O, Fuchslueger, L, Oblitas, E, Hartley, IP, Iversen, CM, Gonçalves, NB, Takeshi, B, Lapola, DM and Quesada, CA. 2020. Fine-root dynamics vary with soil depth and precipitation in a low-nutrient tropical forest in the Central Amazonia. Plant-Environment Interactions, 1(1): 3–16. DOI: 10.1002/pei3.10010
- Cousijn, H, Kenall, A, Ganley, E, Harrison, M, Kernohan, D, Lemberger, T, Murphy, F, Polischuk, P, Taylor, S, Martone, M and Clark, T. 2018. A data citation roadmap for scientific publishers. Scientific Data, 5(1): 1–11. DOI: 10.1038/sdata.2018.259
- Cox, SJD. 2017. Ontology for observations and sampling features, with alignments to existing models. Semantic Web, 8(3): 453–470. DOI: 10.3233/SW-160214
- Damerow, J, Varadharajan, C, Boye, K, Brodie, E, Chadwick, D, Cholia, S, Elbashandy, H, Ely, K, Goldman, A, Hendrix, V, Jones, C, Jones, M, Kakalia, Z, Kemner, K, Kersting, A, Maher, K, Merino, N, O’Brien, F, Perzan, Z, Robles, E, Snavely, C, Sorensen, P, Stegen, J, Weisenhorn, P, Whitenack, K, Zavarin, M and Agarwal, D. 2020. Sample Identifiers and Metadata Reporting Format for Environmental Systems Science. Environmental Systems Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE). DOI: 10.15485/1660470
- Darwin Core Task Group. 2014. Darwin Core: 2014-11-08. Biodiversity Information Standards (TDWG). DOI: 10.5281/zenodo.12694
- DataCite Metadata Working Group. 2019. DataCite Metadata Schema for the Publication and Citation of Research Data. DataCite e.V. DOI: 10.5438/rv0g-av03 [Last accessed 16 September 2020].
- DCMI Usage Board. 2020. Dublin Core Metadata Initiative (DCMI) Metadata Terms. Available at
https://www.dublincore.org/specifications/dublin-core/dcmi-terms/ . - Devaraju, A, Klump, J, Cox, SJD and Golodoniuc, P. 2016. Representing and publishing physical sample descriptions. Computers & geosciences, 96: 1–10. DOI: 10.1016/j.cageo.2016.07.018
- Devaraju, A, Klump, J, Tey, V, Fraser, R, Cox, S and Wyborn, L. 2017.
A Digital Repository for Physical Samples: Concepts, Solutions and Management . In: Kamps, J, Tsakonas, G, Manolopoulos, Y, Iliadis, L and Karydis, I (eds.), Research and Advanced Technology for Digital Libraries. Springer International Publishing, 74–85. DOI: 10.1007/978-3-319-67008-9_7 - Diepenbroek, M, Grobe, H, Reinke, M, Schindler, U, Schlitzer, R, Sieger, R and Wefer, G. 2002. PANGAEA – an information system for environmental sciences. Computers & Geosciences, 28(10): 1201–1210. DOI: 10.1016/S0098-3004(02)00039-0
- Duerr, RE, Downs, RR, Tilmes, C, Barkstrom, B, Lenhardt, WC, Glassy, J, Bermudez, LE and Slaughter, P. 2011. On the utility of identification schemes for digital earth science data: an assessment and recommendations. Earth Science Informatics, 4(3): 139. DOI: 10.1007/s12145-011-0083-6
- Enke, N, Thessen, A, Bach, K, Bendix, J, Seeger, B and Gemeinholzer, B. 2012. The user’s view on biodiversity data sharing — Investigating facts of acceptance and requirements to realize a sustainable use of research data —. Ecological informatics, 11: 25–33. DOI: 10.1016/j.ecoinf.2012.03.004
- Esteva, M, Walls, RL, Magill, AB, Xu, W, Huang, R, Carson, J and Song, J. 2019. Identifier Services: Modeling and Implementing Distributed Data Management in Cyberinfrastructure. Data and Information Management, 3(1): 26–39. DOI: 10.2478/dim-2019-0002
- Farrell, J and Simcoe, T. 2012.
Four Paths to Compatibility . In: Peitz, M (ed.), The Oxford Handbook of the Digital Economy. Oxford University Press. DOI: 10.1093/oxfordhb/9780195397840.013.0002 - Ferguson, C, McEntrye, J, Bunakov, V, Lambert, S, van der Sandt, S, Kotarski, R, Stewart, S, MacEwan, A, Fenner, M, Cruse, P, van Horik, R, Dohna, T, Koop-Jacobsen, K, Schindler, U and McCafferty, S. 2018. Survey of Current PID Services Landscape. FREYA Consortium.
- Field, D, Amaral-Zettler, L, Cochrane, G, Cole, JR, Dawyndt, P, Garrity, GM, Gilbert, J, Glöckner, FO, Hirschman, L, Karsch-Mizrachi, I, Klenk, H-P, Knight, R, Kottmann, R, Kyrpides, N, Meyer, F, San Gil, I, Sansone, S-A, Schriml, LM, Sterk, P, Tatusova, T, Ussery, DW, White, O and Wooley, J. 2011. The Genomic Standards Consortium. PLoS biology, 9(6):
e1001088 . DOI: 10.1371/journal.pbio.1001088 - Freedman, LP, Cockburn, IM and Simcoe, TS. 2015. The Economics of Reproducibility in Preclinical Research. PLoS biology, 13(6):
e1002165 . DOI: 10.1371/journal.pbio.1002165 - Gaiji, S, Chavan, V, Ariño, AH, Otegui, J, Hobern, D, Sood, R and Robles, E. 2013. Content assessment of the primary biodiversity data published through GBIF network: Status, challenges and potentials. Biodiversity Informatics, 8(2). DOI: 10.17161/bi.v8i2.4124
- Gardner, T. 2014. A swan in the making. Science, 345(6199): 855–855. DOI: 10.1126/science.1259740
- Goldstein, S, Lehnert, K and Hofmann, A. 2014. Requirements for the Publication of Geochemical Data. Available at
http://doi.iedadata.org/100426 [Last accessed 11 February 2019]. - Guralnick, R, Conlin, T, Deck, J, Stucky, BJ and Cellinese, N. 2014. The Trouble with Triplets in Biodiversity Informatics: A Data-Driven Case against Current Identifier Practices. PloS one, 9(12):
e114069 . DOI: 10.1371/journal.pone.0114069 - Guralnick, RP, Cellinese, N, Deck, J, Pyle, RL, Kunze, J, Penev, L, Walls, R, Hagedorn, G, Agosti, D, Wieczorek, J, Catapano, T and Page, R. 2015. Community Next Steps for Making Globally Unique Identifiers Work for Biocollections Data. ZooKeys, 494: 133–154. DOI: 10.3897/zookeys.494.9352
- Hanson, B. 2016. AGU Opens Its Journals to Author Identifiers. Available at
https://eos.org/agu-news/agu-opens-its-journals-to-author-identifiers [Last accessed 28 September 2020]. DOI: 10.1029/2016EO043183 - Horsburgh, JS, Aufdenkampe, AK, Mayorga, E, Lehnert, KA, Hsu, L, Song, L, Jones, AS, Damiano, SG, Tarboton, DG, Valentine, D, Zaslavsky, I and Whitenack, T. 2016. Observations Data Model 2: A community information model for spatially discrete Earth observations. Environmental Modelling & Software, 79: 55–74. DOI: 10.1016/j.envsoft.2016.01.010
- Jetz, W, Thomas, GH, Joy, JB, Hartmann, K and Mooers, AO. 2012. The global diversity of birds in space and time. Nature, 491(7424): 444–448. DOI: 10.1038/nature11631
- Kelling, S, Hochachka, WM, Fink, D, Riedewald, M, Caruana, R, Ballard, G and Hooker, G. 2009. Data-intensive Science: A New Paradigm for Biodiversity Studies. Bioscience, 59(7): 613–620. DOI: 10.1525/bio.2009.59.7.12
- Klump, J, Huber, R and Diepenbroek, M. 2016. DOI for geoscience data - how early practices shape present perceptions. Earth Science Informatics, 9(1): 123–136. DOI: 10.1007/s12145-015-0231-5
- Lehnert, K. 2018. IGSN: Toward a Mature and Generic Persistent Identifier for Samples. Available at
https://www.slideshare.net/klehnert/igsn-toward-a-mature-and-generic-persistent-identifier-for-samples [Last accessed 25 January 2019]. - Lehnert, KA, Klump, J, Arko, RA, Bristol, S, Buczkowski, B, Chan, C, Chan, S, Conze, R, Cox, SJ, Habermann, T, Hangsterfer, A, Hsu, L, Milan, A, Miller, SP, Noren, AJ, Richard, SM, Valentine, DW, Whitenack, T, Wyborn, LA and Zaslavsky, I. 2011. IGSN e.V.: Registration and Identification Services for Physical Samples in the Digital Universe. AGU Fall Meeting Abstracts, 13: IN13B–1324. Available at
http://adsabs.harvard.edu/abs/2011AGUFMIN13B1324L [Last accessed 1 March 2019]. - Lehnert, K, Klump, J, Wyborn, L and Ramdeen, S. 2019a. Persistent, Global, Unique: The three key requirements for a trusted identifier system for physical samples. Biodiversity Information Science and Standards, 3:
e37334 . DOI: 10.3897/biss.3.37334 - Lehnert, K, Wyborn, L and Klump, J. 2019b. FAIR Geoscientific Samples and Data Need International Collaboration. Acta Geologica Sinica – English Edition, 93(S3): 32–33. DOI: 10.1111/1755-6724.14236
- Lin, J and Strasser, C. 2014. Recommendations for the Role of Publishers in Access to Data. PLoS biology, 12(10):
e1001975 . DOI: 10.1371/journal.pbio.1001975 - Malik, AA, Martiny, JBH, Brodie, EL, Martiny, AC, Treseder, KK and Allison, SD. 2020. Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change. The ISME journal, 14(1): 1–9. DOI: 10.1038/s41396-019-0510-0
- McMurry, JA, Juty, N, Blomberg, N, Burdett, T, Conlin, T, Conte, N, Courtot, M, Deck, J, Dumontier, M, Fellows, DK, Gonzalez-Beltran, A, Gormanns, P, Grethe, J, Hastings, J, Hériché, J-K, Hermjakob, H, Ison, JC, Jimenez, RC, Jupp, S, Kunze, J, Laibe, C, Le Novère, N, Malone, J, Martin, MJ, McEntyre, JR, Morris, C, Muilu, J, Müller, W, Rocca-Serra, P, Sansone, S-A, Sariyar, M, Snoep, JL, Soiland-Reyes, S, Stanford, NJ, Swainston, N, Washington, N, Williams, AR, Wimalaratne, SM, Winfree, LM, Wolstencroft, K, Goble, C, Mungall, CJ, Haendel, MA and Parkinson, H. 2017. Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data. PLoS biology, 15(6). DOI: 10.1371/journal.pbio.2001414
- McNutt, M, Lehnert, K, Hanson, B, Nosek, BA, Ellison, AM and King, JL. 2016. Liberating field science samples and data. Science, 351(6277): 1024–1026. DOI: 10.1126/science.aad7048
- Michener, WK. 2015. Ecological data sharing. Ecological informatics, 29: 33–44. DOI: 10.1016/j.ecoinf.2015.06.010
- Michener, WK, Brunt, JW, Helly, JJ, Kirchner, TB and Stafford, SG. 1997. Nongeospatial Metadata for the Ecological Sciences. Ecological applications: a publication of the Ecological Society of America, 7(1): 330–342. DOI: 10.1890/1051-0761(1997)007[0330:NMFTES]2.0.CO;2
- Open Geospatial Consortium Inc. 2010. ISO 19156:2011 – Geographic information — Observations and measurements. International Organization for Standardization. DOI: 10.13140/2.1.1142.3042
- Page, R. 2016. Towards a biodiversity knowledge graph. Research Ideas and Outcomes, 2:
e8767 . DOI: 10.3897/rio.2.e8767 - Peters, DPC, Loescher, HW, SanClements, MD and Havstad, KM. 2014. Taking the pulse of a continent: expanding site-based research infrastructure for regional- to continental-scale ecology. Ecosphere, 5(3): art29. DOI: 10.1890/ES13-00295.1
- Rocca-Serra, P, Sansone, S-A, Brandizi, M, et al. 2008. ISA-TAB Specification Documentation. Available at
http://isatab.sourceforge.net/docs/ISA-TAB_release-candidate-1_v1.0_24nov08.pdf . - Piwowar, HA and Vision, TJ. 2013. Data reuse and the open data citation advantage. PeerJ, 1:
e175 . DOI: 10.7717/peerj.175 - Poisot, T, Bruneau, A, Gonzalez, A, Gravel, D and Peres-Neto, P. 2019. Ecological Data Should Not Be So Hard to Find and Reuse. Trends in ecology & evolution, 34(6): 494–496. DOI: 10.1016/j.tree.2019.04.005
- Ponsero, AJ, Bomhoff, M, Blumberg, K, Youens-Clark, K, Herz, NM, Wood-Charlson, EM, Delong, EF and Hurwitz, BL. 2020. Planet Microbe: a platform for marine microbiology to discover and analyze interconnected ‘omics and environmental data. Nucleic acids research. DOI: 10.1093/nar/gkaa637
- Rauber, A, Asmi, A, Van Uytvanck, D and Proell, S. 2016. Data Citation of Evolving Data: Recommendations of the RDA Working Group on Data Citation (WGDC). Research Data Alliance. DOI: 10.15497/rda00016
- Reddy, TBK, Thomas, AD, Stamatis, D, Bertsch, J, Isbandi, M, Jansson, J, Mallajosyula, J, Pagani, I, Lobos, EA and Kyrpides, NC. 2015. The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification. Nucleic acids research, 43(Database issue): D1099–106. DOI: 10.1093/nar/gku950
- Renaut, S, Budden, AE, Gravel, D, Poisot, T and Peres-Neto, P. 2018. Management, Archiving, and Sharing for Biologists and the Role of Research Institutions in the Technology-Oriented Age. Bioscience, 68(6): 400–411. DOI: 10.1093/biosci/biy038
- Robertson, T, Döring, M, Guralnick, R, Bloom, D, Wieczorek, J, Braak, K, Otegui, J, Russell, L and Desmet, P. 2014. The GBIF integrated publishing toolkit: facilitating the efficient publishing of biodiversity data on the internet. PloS one, 9(8):
e102623 . DOI: 10.1371/journal.pone.0102623 - Roche, DG, Kruuk, LEB, Lanfear, R and Binning, SA. 2015. Public Data Archiving in Ecology and Evolution: How Well Are We Doing? PLoS biology, 13(11):
e1002295 . DOI: 10.1371/journal.pbio.1002295 - Serbin, SP, Wu, J, Ely, KS, Kruger, EL, Townsend, PA, Meng, R, Wolfe, BT, Chlus, A, Wang, Z and Rogers, A. 2019. From the Arctic to the tropics: multibiome prediction of leaf mass per area using leaf reflectance. The New phytologist, 224(4): 1557–1568. DOI: 10.1111/nph.16123
- Soranno, PA and Schimel, DS. 2014. Macrosystems ecology: big data, big ecology. Frontiers in ecology and the environment, 12(1): 3–3. DOI: 10.1890/1540-9295-12.1.3
- Stall, S, Yarmey, L, Cutcher-Gershenfeld, J, Hanson, B, Lehnert, K, Nosek, B, Parsons, M, Robinson, E, and Wyborn, L. 2019. Make scientific data FAIR. Nature, 570(7759): 27. DOI: 10.1038/d41586-019-01720-7
- Stegen, JC and Goldman, AE. 2018 WHONDRS: a Community Resource for Studying Dynamic River Corridors. mSystems, 3(5): e00151–18. DOI: 10.1128/mSystems.00151-18
- System for Earth Sample Registration (SESAR). 2020a. SESAR Batch Registration Quick Guide. DOI: 10.5281/zenodo.3874923
- System for Earth Sample Registration (SESAR). 2020b. SESAR XML Schema for samples. DOI: 10.5281/zenodo.3875531
- Teal, TK, Cranston, KA, Lapp, H, White, E, Wilson, G, Ram, K and Pawlik, A. 2015. Data Carpentry: Workshops to Increase Data Literacy for Researchers, 10(1): 135–143. DOI: 10.2218/ijdc.v10i1.351
- Toyoda, JG, Goldman, AE, Chu, RK, Danczak, RE and Daly, RA. 2020. WHONDRS Summer 2019 Sampling Campaign: Global River Corridor Surface Water FTICR-MS, NPOC, and Stable Isotopes. Available at
https://data.ess-dive.lbl.gov/view/doi:10.15485/1603775 [Last accessed 16 November 2020]. - Treloar, A and Klump, J. 2019. Updating the Data Curation Continuum: not just Data, still focused on Curation, more about Domains. International Journal of Digital Curation, 14(1): 87–101. DOI: 10.2218/ijdc.v14i1.643
- Treseder, KK, Balser, TC, Bradford, MA, Brodie, EL, Dubinsky, EA, Eviner, VT, Hofmockel, KS, Lennon, JT, Levine, UY, MacGregor, BJ, Pett-Ridge, J and Waldrop, MP. 2012. Integrating microbial ecology into ecosystem models: challenges and priorities. Biogeochemistry, 109(1): 7–18. DOI: 10.1007/s10533-011-9636-5
- Varadharajan, C, Cholia, S, Snavely, C, Hendrix, V, Procopiou, C, Riley, W and Agarwal, DA. 2018. Launching an Accessible Archive of Environmental Data. Eos, 100. DOI: 10.1029/2019EO111263
- Voytek, B. 2016. The Virtuous Cycle of a Data Ecosystem. PLoS computational biology, 12(8):
e1005037 . DOI: 10.1371/journal.pcbi.1005037 - Walls, R, Davies, N, Kansa, S, Kunze, J, Lehnert, K and Vieglais, D. 2020. Building transdisciplinary infrastructure for natural history material samples with the Internet of Samples (iSamples). Zenodo.
https://zenodo.org/record/4002440 - Walls, RL, Deck, J, Guralnick, R, Baskauf, S, Beaman, R, Blum, S, Bowers, S, Buttigieg, PL, Davies, N, Endresen, D, Gandolfo, MA, Hanner, R, Janning, A, Krishtalka, L, Matsunaga, A, Midford, P, Morrison, N, Tuama, ÉÓ, Schildhauer, M, Smith, B, Stucky, BJ, Thomer, A, Wieczorek, J, Whitacre, J and Wooley, J. 2014. Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies. PloS one, 9(3):
e89606 . DOI: 10.1371/journal.pone.0089606 - Weart, S. 2013. Rise of interdisciplinary research on climate. Proceedings of the National Academy of Sciences of the United States of America, 110(Suppl 1): 3657–3664. DOI: 10.1073/pnas.1107482109
- Webb, CO, Ackerly, DD, McPeek, MA and Donoghue, MJ. 2003. Phylogenies and Community Ecology. DOI: 10.1146/annurev.ecolsys.33.010802.150448
- Whitlock, MC. 2011. Data archiving in ecology and evolution: best practices. Trends in ecology & evolution, 26(2): 61–65. DOI: 10.1016/j.tree.2010.11.006
- Wieczorek, J, Bloom, D, Guralnick, R, Blum, S, Döring, M, Giovanni, R, Robertson, T and Vieglais, D. 2012. Darwin Core: An Evolving Community-Developed Biodiversity Data Standard. PloS one, 7(1):
e29715 . DOI: 10.1371/journal.pone.0029715 - Wilkinson, MD, Dumontier, M, Aalbersberg, IJ, Appleton, G, Axton, M, Baak, A, Blomberg, N, Boiten, J-W, da Silva Santos, LB, Bourne, PE, Bouwman, J, Brookes, AJ, Clark, T, Crosas, M, Dillo, I, Dumon, O, Edmunds, S, Evelo, CT, Finkers, R, Gonzalez-Beltran, A, Gray, AJG, Groth, P, Goble, C, Grethe, JS, Heringa, J, ’t Hoen, PAC, Hooft, R, Kuhn, T, Kok, R, Kok, J, Lusher, SJ, Martone, ME, Mons, A, Packer, AL, Persson, B, Rocca-Serra, P, Roos, M, van Schaik, R, Sansone, S-A, Schultes, E, Sengstag, T, Slater, T, Strawn, G, Swertz, MA, Thompson, M, van der Lei, J, van Mulligen, E, Velterop, J, Waagmeester, A, Wittenburg, P, Wolstencroft, K, Zhao, J and Mons, B. 2016. The FAIR Guiding Principles for scientific data management and stewardship. Scientific Data, 3: 160018. DOI: 10.1038/sdata.2016.18
- Wu, J, Rogers, A, Albert, LP, Ely, K, Prohaska, N, Wolfe, BT, Oliveira, RC,
Jr , Saleska, SR and Serbin, SP. 2019. Leaf reflectance spectroscopy captures variation in carboxylation capacity across species, canopy environment and leaf age in lowland moist tropical forests. The New phytologist, 224(2): 663–674. DOI: 10.1111/nph.16029 - Wu, J, Serbin, SP, Ely, KS, Wolfe, BT, Dickman, LT, Grossiord, C, Michaletz, ST, Collins, AD, Detto, M, McDowell, NG, Wright, SJ and Rogers, A. 2020. The response of stomatal conductance to seasonal drought in tropical forests. Global change biology, 26(2): 823–839. DOI: 10.1111/gcb.14820
- Yilmaz, P, Kottmann, R, Field, D, Knight, R, Cole, JR, Amaral-Zettler, L, Gilbert, JA, Karsch-Mizrachi, I, Johnston, A, Cochrane, G, Vaughan, R, Hunter, C, Park, J, Morrison, N, Rocca-Serra, P, Sterk, P, Arumugam, M, Bailey, M, Baumgartner, L, Birren, BW, Blaser, MJ, Bonazzi, V, Booth, T, Bork, P, Bushman, FD, Buttigieg, PL, Chain, PSG, Charlson, E, Costello, EK, Huot-Creasy, H, Dawyndt, P, DeSantis, T, Fierer, N, Fuhrman, JA, Gallery, RE, Gevers, D, Gibbs, RA, Gil, IS, Gonzalez, A, Gordon, JI, Guralnick, R, Hankeln, W, Highlander, S, Hugenholtz, P, Jansson, J, Kau, AL, Kelley, ST, Kennedy, J, Knights, D, Koren, O, Kuczynski, J, Kyrpides, N, Larsen, R, Lauber, CL, Legg, T, Ley, RE, Lozupone, CA, Ludwig, W, Lyons, D, Maguire, E, Methé, BA, Meyer, F, Muegge, B, Nakielny, S, Nelson, KE, Nemergut, D, Neufeld, JD, Newbold, LK, Oliver, AE, Pace, NR, Palanisamy, G, Peplies, J, Petrosino, J, Proctor, L, Pruesse, E, Quast, C, Raes, J, Ratnasingham, S, Ravel, J, Relman, DA, Assunta-Sansone, S, Schloss, PD, Schriml, L, Sinha, R, Smith, MI, Sodergren, E, Spor, A, Stombaugh, J, Tiedje, JM, Ward, DV, Weinstock, GM, Wendel, D, White, O, Whiteley, A, Wilke, A, Wortman, JR, Yatsunenko, T and Glöckner, FO. 2011. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature biotechnology, 29(5): 415–420. DOI: 10.1038/nbt.1823
DOI: https://doi.org/10.5334/dsj-2021-011 | Journal eISSN: 1683-1470
Language: English
Page range: 11 - 11
Submitted on: Dec 5, 2020
Accepted on: Feb 12, 2021
Published on: Mar 18, 2021
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
Keywords:
© 2021 Joan E. Damerow, Charuleka Varadharajan, Kristin Boye, Eoin L. Brodie, Madison Burrus, K. Dana Chadwick, Robert Crystal-Ornelas, Hesham Elbashandy, Ricardo J. Eloy Alves, Kim S. Ely, Amy E. Goldman, Ted Haberman, Valerie Hendrix, Zarine Kakalia, Kenneth M. Kemner, Annie B. Kersting, Nancy Merino, Fianna O'Brien, Zach Perzan, Emily Robles, Patrick Sorensen, James C. Stegen, Ramona L. Walls, Pamela Weisenhorn, Mavrik Zavarin, Deborah Agarwal, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.