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Impact of the Protein Data Bank Across Scientific Disciplines Cover

Impact of the Protein Data Bank Across Scientific Disciplines

Open Access
|Jun 2020

References

  1. Abaci, A. 2017. Scientific competition, impact factor, and Altmetrics. Anatol J Cardiol, 18(5): 313. DOI: 10.14744/AnatolJCardiol.2017.11
  2. Abrahams, JP, Leslie, AG, Lutter, R and Walker, JE. 1994. Structure at 2.8 Å resolution of F1-ATPase from bovine heart mitochondria. Nature, 370: 6218. DOI: 10.1038/370621a0
  3. Arnold, K, Bordoli, L, Kopp, J and Schwede, T. 2006. The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling. Bioinformatics, 22: 195201. DOI: 10.1093/bioinformatics/bti770
  4. Ban, N, Nissen, P, Hansen, J, Moore, PB and Steitz, TA. 2000. The complete atomic structure of the large ribosomal subunit at a 2.4 Å resolution. Science, 289: 905920. DOI: 10.1126/science.289.5481.905
  5. Basner, J. 2017. Impact Analysis of “Berman HM et al., (2000), The Protein Data Bank”. DOI: 10.2210/rcsb_pdb/pdb-cit-anal-2017
  6. Bella, J, Eaton, M, Brodsky, B and Berman, HM. 1994. Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution. Science, 266: 7581. DOI: 10.1126/science.7695699
  7. Berman, HM, Henrick, K and Nakamura, H. 2003. Announcing the worldwide Protein Data Bank. Nat. Struct. Biol., 10: 980. DOI: 10.1038/nsb1203-980
  8. Berman, HM, Westbrook, J, Feng, Z, Gilliland, G, Bhat, TN, Weissig, H, Shindyalov, IN and Bourne, PE. 2000. The Protein Data Bank. Nucleic Acids Res, 28: 23542. DOI: 10.1093/nar/28.1.235
  9. Bjorkman, PJ, Saper, MA, Samraoui, B, Bennett, WS, Strominger, JL and Wiley, DC. 1987. Structure of the human class I histocompatibility antigen, HLA-A2. Nature, 329: 50612. DOI: 10.1038/329506a0
  10. Bolin, JT, Filman, DJ, Matthews, DA, Hamlin, RC and Kraut, J. 1982. Crystal structures of Escherichia coli and Lactobacillus casei dihydrofolate reductase refined at 1.7 A resolution. I. General features and binding of methotrexate. J Biol Chem, 257: 1365062. DOI: 10.2210/pdb4dfr/pdb
  11. Bolton, W and Perutz, MF. 1970. Three dimensional fourier synthesis of horse deoxyhaemoglobin at 2.8 Ångstrom units resolution. Nature, 228: 5512. DOI: 10.1038/228551a0
  12. Bousfield, D, McEntyre, J, Velankar, S, Papadatos, G, Bateman, A, Cochrane, G, Kim, JH, Graef, F, Vartak, V, Alako, B and Blomberg, N. 2016. Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources. F1000Res, 5. DOI: 10.12688/f1000research.7911.1
  13. Bronmann, L and Williams, R. 2020. An Evaluation of Percentile Measures of Citation Impact, and a Proposal for Making Them Better. arXiv, arXiv:2001.04290.
  14. Brzozowski, AM, Derewenda, U, Derewenda, ZS, Dodson, GG, Lawson, DM, Turkenburg, JP, Bjorkling, F, Huge-Jensen, B, Patkar, SA and Thim, L. 1991. A model for interfacial activation in lipases from the structure of a fungal lipase-inhibitor complex. Nature, 351: 4914. DOI: 10.1038/351491a0
  15. Burley, SK, Berman, HM, Bhikadiya, C, Bi, C, Chen, L, Di Costanzo, L, Christie, C, Dalenberg, K, Duarte, JM, Dutta, S, Feng, Z, Ghosh, S, Goodsell, DS, Green, RK, Guranovic, V, Guzenko, D, Hudson, BP, Kalro, T, Liang, Y, Lowe, R, Namkoong, H, Peisach, E, Periskova, I, Prlic, A, Randle, C, Rose, A, Rose, P, Sala, R, Sekharan, M, Shao, C, Tan, L, Tao, YP, Valasatava, Y, Voigt, M, Westbrook, J, Woo, J, Yang, H, Young, J, Zhuravleva, M and Zardecki, C. 2019. RCSB Protein Data Bank: Biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. Nucleic Acids Res, 47: D464D474. DOI: 10.1093/nar/gky1004
  16. Burley, SK, Berman, HM, Christie, C, Duarte, JM, Feng, Z, Westbrook, J, Young, J and Zardecki, C. 2018. RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education. Protein Sci, 27: 316330. DOI: 10.1002/pro.3331
  17. Castellani, F, van Rossum, B, Diehl, A, Schubert, M, Rehbein, K and Oschkinat, H. 2002. Structure of a protein determined by solid-state magic-angle-spinning NMR spectroscopy. Nature, 420: 98102. DOI: 10.1038/nature01070
  18. Chapman, HN, Fromme, P, Barty, A, White, TA, Kirian, RA, Aquila, A, Hunter, MS, Schulz, J, DePonte, DP, Weierstall, U, Doak, RB, Maia, FR, Martin, AV, Schlichting, I, Lomb, L, Coppola, N, Shoeman, RL, Epp, SW, Hartmann, R, Rolles, D, Rudenko, A, Foucar, L, Kimmel, N, Weidenspointner, G, Holl, P, Liang, M, Barthelmess, M, Caleman, C, Boutet, S, Bogan, MJ, Krzywinski, J, Bostedt, C, Bajt, S, Gumprecht, L, Rudek, B, Erk, B, Schmidt, C, Homke, A, Reich, C, Pietschner, D, Struder, L, Hauser, G, Gorke, H, Ullrich, J, Herrmann, S, Schaller, G, Schopper, F, Soltau, H, Kuhnel, KU, Messerschmidt, M, Bozek, JD, Hau-Riege, SP, Frank, M, Hampton, CY, Sierra, RG, Starodub, D, Williams, GJ, Hajdu, J, Timneanu, N, Seibert, MM, Andreasson, J, Rocker, A, Jonsson, O, Svenda, M, Stern, S, Nass, K, Andritschke, R, Schroter, CD, Krasniqi, F, Bott, M, Schmidt, KE, Wang, X, Grotjohann, I, Holton, JM, Barends, TR, Neutze, R, Marchesini, S, Fromme, R, Schorb, S, Rupp, D, Adolph, M, Gorkhover, T, Andersson, I, Hirsemann, H, Potdevin, G, Graafsma, H, Nilsson, B and Spence, JC. 2011. Femtosecond X-ray protein nanocrystallography. Nature, 470: 737. DOI: 10.2210/pdb3pcq/pdb
  19. Cherezov, V, Rosenbaum, DM, Hanson, MA, Rasmussen, SG, Thian, FS, Kobilka, TS, Choi, HJ, Kuhn, P, Weis, WI, Kobilka, BK and Stevens, RC. 2007. High-resolution crystal structure of an engineered human 2-adrenergic G protein-coupled receptor. Science, 318: 125865. DOI: 10.1126/science.1150577
  20. Clarivate Analytics Web of ScienceTM. © Copyright Clarivate Analytics 2019, All rights reserved.
  21. Colavizza, G, Hrynaszkiewicz, I, Staden, I, Whitaker, K and McGillivray, B. 2019. The citation advantage of linking publications to research data. arXiv, arXiv:1907.02565 [cs.DL]. DOI: 10.1371/journal.pone.0230416
  22. Dahiyat, BI and Mayo, SL. 1997. De novo protein design: Fully automated sequence selection. Science, 278: 827. DOI: 10.1126/science.278.5335.82
  23. Diamandis, EP. 2017. The Journal Impact Factor is under attack – use the CAPCI factor instead. BMC Med, 15(1): 9. DOI: 10.1186/s12916-016-0773-5
  24. Doyle, DA, Morais Cabral, J, Pfuetzner, RA, Kuo, A, Gulbis, JM, Cohen, SL, Chait, BT and MacKinnon, R. 1998. The structure of the potassium channel: Molecular basis of K+ conduction and selectivity. Science, 280: 6977. DOI: 10.1126/science.280.5360.69
  25. Drew, HR, Wing, RM, Takano, T, Broka, C, Tanaka, S, Itakura, K and Dickerson, RE. 1981. Structure of a B-DNA dodecamer: Conformation and dynamics. Proc. Natl. Acad. Sci. U.S.A., 78: 21792183. DOI: 10.1073/pnas.78.4.2179
  26. Ferreira, KN, Iverson, TM, Maghlaoui, K, Barber, J and Iwata, S. 2004. Architecture of the photosynthetic oxygen-evolving center. Science, 303: 18318. DOI: 10.2210/pdb1s5l/pdb
  27. Fitzgerald, PMD, Westbrook, JD, Bourne, PE, McMahon, B, Watenpaugh, KD and Berman, HM. 2005. 4.5 Macromolecular dictionary (mmCIF). In: Hall, SR and Mcmahon, B (Eds.), International Tables for Crystallography G. Definition and exchange of crystallographic data. Dordrecht, The Netherlands: Springer. DOI: 10.1107/97809553602060000745
  28. Goodsell, DS, Zardecki, C, Berman, HM and Burley, SK. 2019. Insights from 20 Years of the Molecule of the Month. Biochemistry and Molecular Biology Education, submitted. DOI: 10.1096/fasebj.2020.34.s1.02238
  29. He, XM and Carter, DC. 1992. Atomic structure and chemistry of human serum albumin. Nature, 358: 20915. DOI: 10.1038/358209a0
  30. Henderson, R, Baldwin, JM, Ceska, TA, Zemlin, F, Beckmann, E and Downing, KH. 1990. Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. J Mol Biol, 213: 899929. DOI: 10.1016/S0022-2836(05)80271-2
  31. Hersel, U, Dahmen, C and Kessler, H. 2003. RGD modified polymers: Biomaterials for stimulated cell adhesion and beyond. Biomaterials, 24: 4385415. DOI: 10.1016/S0142-9612(03)00343-0
  32. Hoang, QQ, Sicheri, F, Howard, AJ and Yang, DS. 2003. Bone recognition mechanism of porcine osteocalcin from crystal structure. Nature, 425: 97780. DOI: 10.1038/nature02079
  33. Huang, YH, Rose, PW and Hsu, CN. 2015. Citing a Data Repository: A Case Study of the Protein Data Bank. PLoS One, 10: e0136631. DOI: 10.1371/journal.pone.0136631
  34. Humphrey, W, Dalke, A and Schulten, K. 1996. VMD: Visual molecular dynamics. J Mol Graph, 14: 3338. DOI: 10.1016/0263-7855(96)00018-5
  35. Jaakola, VP, Griffith, MT, Hanson, MA, Cherezov, V, Chien, EY, Lane, JR, Ijzerman, AP and Stevens, RC. 2008. The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist. Science, 322: 12117. DOI: 10.1126/science.1164772
  36. Jordan, P, Fromme, P, Witt, HT, Klukas, O, Saenger, W and Krauss, N. 2001. Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution. Nature, 411: 90917. DOI: 10.1038/35082000
  37. Kendrew, JC, Dickerson, RE, Strandberg, BE, Hart, RG, Davies, DR, Phillips, DC and Shore, VC. 1960. Structure of myoglobin: A three-dimensional Fourier synthesis at 2 A. resolution. Nature, 185: 4227. DOI: 10.1038/185422a0
  38. Kinjo, AR, Bekker, GJ, Wako, H, Endo, S, Tsuchiya, Y, Sato, H, Nishi, H, Kinoshita, K, Suzuki, H, Kawabata, T, Yokochi, M, Iwata, T, Kobayashi, N, Fujiwara, T, Kurisu, G and Nakamura, H. 2018. New tools and functions in data-out activities at Protein Data Bank Japan (PDBj). Protein Sci., 27: 95102. DOI: 10.1002/pro.3273
  39. Koelblinger, D, Zimmermann, G, Weineck, SB and Kiesslich, T. 2019. Size matters! Association between journal size and longitudinal variability of the Journal Impact Factor. PLoS ONE, 14(11): e0225360. DOI: 10.1371/journal.pone.0225360
  40. Koepke, J, Hu, X, Muenke, C, Schulten, K and Michel, H. 1996. The crystal structure of the light-harvesting complex II (B800–850) from Rhodospirillum molischianum. Structure, 4, 58197. DOI: 10.1016/S0969-2126(96)00063-9
  41. Kuhlman, B, Dantas, G, Ireton, GC, Varani, G, Stoddard, BL and Baker, D. 2003. Design of a novel globular protein fold with atomic-level accuracy. Science, 302: 13648. DOI: 10.1126/science.1089427
  42. Lam, PY, Jadhav, PK, Eyermann, CJ, Hodge, CN, Ru, Y, Bacheler, LT, Meek, JL, Otto, MJ, Rayner, MM, Wong, YN, et al. 1994. Rational design of potent, bioavailable, nonpeptide cyclic ureas as HIV protease inhibitors. Science, 263: 3804. DOI: 10.1126/science.8278812
  43. Leahy, DJ, Aukhil, I and Erickson, HP. 1996. 2.0 A crystal structure of a four-domain segment of human fibronectin encompassing the RGD loop and synergy region. Cell, 84: 15564. DOI: 10.1016/S0092-8674(00)81002-8
  44. Loll, B, Kern, J, Saenger, W, Zouni, A and Biesiadka, J. 2005. Towards complete cofactor arrangement in the 3.0 A resolution structure of photosystem II. Nature, 438: 10404. DOI: 10.1038/nature04224
  45. Luger, K, Mader, AW, Richmond, RK, Sargent, DF and Richmond, TJ. 1997. Crystal structure of the nucleosome core particle at 2.8Å resolution. Nature, 389: 251260. DOI: 10.1038/38444
  46. Markosian, C, Di Costanzo, L, Sekharan, M, Shao, C, Burley, SK and Zardecki, C. 2018. Analysis of impact metrics for the Protein Data Bank. Sci Data, 5: 180212. DOI: 10.1038/sdata.2018.212
  47. Morris, C. 2018. The Life Cycle of Structural Biology Data. Data Science Journal, 17: 26. DOI: 10.5334/dsj-2018-026
  48. Muller, K, Faeh, C and Diederich, F. 2007. Fluorine in pharmaceuticals: Looking beyond intuition. Science, 317: 18816. DOI: 10.1126/science.1131943
  49. Neidigh, JW, Fesinmeyer, RM and Andersen, NH. 2002. Designing a 20-residue protein. Nat Struct Biol, 9: 42530. DOI: 10.1038/nsb798
  50. Nel, AE, Madler, L, Velegol, D, Xia, T, Hoek, EM, Somasundaran, P, Klaessig, F, Castranova, V and Thompson, M. 2009. Understanding biophysicochemical interactions at the nano-bio interface. Nat Mater, 8: 54357. DOI: 10.1038/nmat2442
  51. Nicolet, Y, Piras, C, Legrand, P, Hatchikian, CE and Fontecilla-Camps, JC. 1999. Desulfovibrio desulfuricans iron hydrogenase: The structure shows unusual coordination to an active site Fe binuclear center. Structure, 7: 1323. DOI: 10.1016/S0969-2126(99)80005-7
  52. Orgel, JP, Irving, TC, Miller, A and Wess, TJ. 2006. Microfibrillar structure of type I collagen in situ. Proc Natl Acad Sci U S A, 103: 90015. DOI: 10.1073/pnas.0502718103
  53. Palczewski, K, Kumasaka, T, Hori, T, Behnke, CA, Motoshima, H, Fox, BA, Le Trong, I, Teller, DC, Okada, T, Stenkamp, RE, Yamamoto, M and Miyano, M. 2000. Crystal structure of rhodopsin: A G protein-coupled receptor. Science, 289: 73945. DOI: 10.1126/science.289.5480.739
  54. Parkinson, GN, Lee, MP and Neidle, S. 2002. Crystal structure of parallel quadruplexes from human telomeric DNA. Nature, 417: 87680. DOI: 10.1038/nature755
  55. Pendlebury, DA. 2009. The use and misuse of journal metrics and other citation indicators. Arch Immunol Ther Exp (Warsz), 57(1): 111. DOI: 10.1007/s00005-009-0008-y
  56. Perutz, MF, Rossmann, MG, Cullis, AF, Muirhead, H, Will, G and North, ACT. 1960. Structure of haemoglobin: A three-dimensional Fourier synthesis at 5.5 Å resolution, obtained by X-ray analysis. Nature, 185: 416422. DOI: 10.1038/185416a0
  57. Peters, JW, Lanzilotta, WN, Lemon, BJ and Seefeldt, LC. 1998. X-ray crystal structure of the Fe-only hydrogenase (CpI) from Clostridium pasteurianum to 1.8 angstrom resolution. Science, 282: 18538. DOI: 10.1126/science.282.5395.1853
  58. Piontek, K, Antorini, M and Choinowski, T. 2002. Crystal structure of a laccase from the fungus Trametes versicolor at 1.90-A resolution containing a full complement of coppers. J Biol Chem, 277: 376639. DOI: 10.1074/jbc.M204571200
  59. Protein Data Bank. 1971. Crystallography: Protein Data Bank. Nature (London), New Biol., 233: 223223. DOI: 10.1038/newbio233223b0
  60. Rasmussen, SG, Choi, HJ, Rosenbaum, DM, Kobilka, TS, Thian, FS, Edwards, PC, Burghammer, M, Ratnala, VR, Sanishvili, R, Fischetti, RF, Schertler, GF, Weis, WI and Kobilka, BK. 2007. Crystal structure of the human beta2 adrenergic G-protein-coupled receptor. Nature, 450: 3837. DOI: 10.1038/nature06325
  61. Rush, TS, 3rd, Grant, JA, Mosyak, L and Nicholls, A. 2005. A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction. J Med Chem, 48: 148995. DOI: 10.1021/jm040163o
  62. Schneider, JW, Van Leeuwen, T, Visser, M and Aagaard, K. 2019. Examining national citation impact by comparing developments in a fixed and a dynamic journal set. Scientometrics, 973985. DOI: 10.1007/s11192-019-03082-3
  63. Sheldrick, GM. 2008. A short history of SHELX. Acta Crystallogr A, 64: 11222. DOI: 10.1107/S0108767307043930
  64. Song, L, Hobaugh, MR, Shustak, C, Cheley, S, Bayley, H and Gouaux, JE. 1996. Structure of staphylococcal alpha-hemolysin, a heptameric transmembrane pore. Science, 274: 185966. DOI: 10.1126/science.274.5294.1859
  65. Sugio, S, Kashima, A, Mochizuki, S, Noda, M and Kobayashi, K. 1999. Crystal structure of human serum albumin at 2.5 A resolution. Protein Eng, 12: 43946. DOI: 10.1093/protein/12.6.439
  66. Umena, Y, Kawakami, K, Shen, JR and Kamiya, N. 2011. Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 A. Nature, 473: 5560. DOI: 10.1038/nature09913
  67. Van Noorden, R, Maher, B and Nuzzo, R. 2014. The top 100 papers. Nature, 514: 5503. DOI: 10.1038/514550a
  68. Vassilev, LT, Vu, BT, Graves, B, Carvajal, D, Podlaski, F, Filipovic, Z, Kong, N, Kammlott, U, Lukacs, C, Klein, C, Fotouhi, N and Liu, EA. 2004. In vivo activation of the p53 pathway by small-molecule antagonists of MDM2. Science, 303: 8448. DOI: 10.1126/science.1092472
  69. Velankar, S, van Ginkel, G, Alhroub, Y, Battle, GM, Berrisford, JM, Conroy, MJ, Dana, JM, Gore, SP, Gutmanas, A, Haslam, P, Hendrickx, PM, Lagerstedt, I, Mir, S, Fernandez Montecelo, MA, Mukhopadhyay, A, Oldfield, TJ, Patwardhan, A, Sanz-Garcia, E, Sen, S, Slowley, RA, Wainwright, ME, Deshpande, MS, Iudin, A, Sahni, G, Salavert Torres, J, Hirshberg, M, Mak, L, Nadzirin, N, Armstrong, DR, Clark, AR, Smart, OS, Korir, PK and Kleywegt, GJ. 2016. PDBe: Improved accessibility of macromolecular structure data from PDB and EMDB. Nucleic Acids Res, 44: D38595. DOI: 10.1093/nar/gkv1047
  70. Warne, T, Serrano-Vega, MJ, Baker, JG, Moukhametzianov, R, Edwards, PC, Henderson, R, Leslie, AG, Tate, CG and Schertler, GF. 2008. Structure of a beta1-adrenergic G-protein-coupled Receptor. Nature, 454: 48691. DOI: 10.1038/nature07101
  71. Watson, HC. 1969. The stereochemistry of the protein myoglobin. Prog. Stereochem., 4: 299.
  72. Weber, PC, Ohlendorf, DH, Wendoloski, JJ and Salemme, FR. 1989. Structural origins of high-affinity biotin binding to streptavidin. Science, 243: 858. DOI: 10.1126/science.2911722
  73. Westbrook, JD and Burley, SK. 2019. How Structural Biologists and the Protein Data Bank Contributed to Recent FDA New Drug Approvals. Structure, 27: 211217. DOI: 10.1016/j.str.2018.11.007
  74. Wilkinson, MD, Dumontier, M, Aalbersberg, IJ, Appleton, G, Axton, M, Baak, A, Blomberg, N, Boiten, JW, da Silva Santos, LB, Bourne, PE, Bouwman, J, Brookes, AJ, Clark, T, Crosas, M, Dillo, I, Dumon, O, Edmunds, S, Evelo, CT, Finkers, R, Gonzalez-Beltran, A, Gray, AJ, Groth, P, Goble, C, Grethe, JS, Heringa, J, T’Hoen, PA, Hooft, R, Kuhn, T, Kok, R, Kok, J, Lusher, SJ, Martone, ME, Mons, A, Packer, AL, Persson, B, Rocca-Serra, P, Roos, M, van Schaik, R, Sansone, SA, Schultes, E, Sengstag, T, Slater, T, Strawn, G, Swertz, MA, Thompson, M, van der Lei, J, van Mulligen, E, Velterop, J, Waagmeester, A, Wittenburg, P, Wolstencroft, K, Zhao, J and Mons, B. 2016. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data, 3: 19. DOI: 10.1038/sdata.2016.18
  75. wwPDB consortium. 2019. Protein Data Bank: The single global archive for 3D macromolecular structure data. Nucleic Acids Res, 47: D520D528. DOI: 10.1093/nar/gky949
  76. Young, JY, Westbrook, JD, Feng, Z, Peisach, E, Persikova, I, Sala, R, Sen, S, Berrisford, JM, Swaminathan, GJ, Oldfield, TJ, Gutmanas, A, Igarashi, R, Armstrong, DR, Baskaran, K, Chen, L, Chen, M, Clark, AR, Costanzo, LD, Dimitropoulos, D, Gao, G, Ghosh, S, Gore, S, Guranovic, V, Hendrickx, PMS, Hudson, BP, Ikegawa, Y, Kengaku, Y, Lawson, CL, Liang, Y, Mak, L, Mukhopadhyay, A, Narayanan, B, Nishiyama, K, Patwardhan, A, Sahni, G, Sanz-García, E, Sato, J, Sekharan, MR, Shao, C, Smart, OS, Tan, L, Ginkel, GV, Yang, H, Zhuravleva, MA, Markley, JL, Nakamura, H, Kurisu, G, Kleywegt, GJ, Velankar, S, Berman, HM and Burley, SK. 2018. Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. Database, 2018: bay002. DOI: 10.1093/database/bay002
  77. Young, JY, Westbrook, JD, Feng, Z, Sala, R, Peisach, E, Oldfield, TJ, Sen, S, Gutmanas, A, Armstrong, DR, Berrisford, JM, Chen, L, Chen, M, Di Costanzo, L, Dimitropoulos, D, Gao, G, Ghosh, S, Gore, S, Guranovic, V, Hendrickx, PM, Hudson, BP, Igarashi, R, Ikegawa, Y, Kobayashi, N, Lawson, CL, Liang, Y, Mading, S, Mak, L, Mir, MS, Mukhopadhyay, A, Patwardhan, A, Persikova, I, Rinaldi, L, Sanz-Garcia, E, Sekharan, MR, Shao, C, Swaminathan, GJ, Tan, L, Ulrich, EL, van Ginkel, G, Yamashita, R, Yang, H, Zhuravleva, MA, Quesada, M, Kleywegt, GJ, Berman, HM, Markley, JL, Nakamura, H, Velankar, S and Burley, SK. 2017. OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive. Structure, 25: 536545. DOI: 10.1016/j.str.2017.01.004
  78. Zheng, J, Birktoft, JJ, Chen, Y, Wang, T, Sha, R, Constantinou, PE, Ginell, SL, Mao, C and Seeman, NC. 2009. From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal. Nature, 461: 747. DOI: 10.1038/nature08274
  79. Zweib, C, Kim, J and Adhya, S. 1989. DNA bending by negative regulatory proteins: Gal and Lac repressor. Gene Develop., 3: 606611. DOI: 10.1101/gad.3.5.606
Language: English
Submitted on: Dec 10, 2019
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Accepted on: May 8, 2020
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Published on: Jun 12, 2020
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2020 Zukang Feng, Natalie Verdiguel, Luigi Di Costanzo, David S. Goodsell, John D. Westbrook, Stephen K. Burley, Christine Zardecki, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.