References
- Abaci, A. 2017. Scientific competition, impact factor, and Altmetrics. Anatol J Cardiol, 18(5): 313. DOI: 10.14744/AnatolJCardiol.2017.11
- Abrahams, JP, Leslie, AG, Lutter, R and Walker, JE. 1994. Structure at 2.8 Å resolution of F1-ATPase from bovine heart mitochondria. Nature, 370: 621–8. DOI: 10.1038/370621a0
- Arnold, K, Bordoli, L, Kopp, J and Schwede, T. 2006. The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling. Bioinformatics, 22: 195–201. DOI: 10.1093/bioinformatics/bti770
- Ban, N, Nissen, P, Hansen, J, Moore, PB and Steitz, TA. 2000. The complete atomic structure of the large ribosomal subunit at a 2.4 Å resolution. Science, 289: 905–920. DOI: 10.1126/science.289.5481.905
- Basner, J. 2017. Impact Analysis of “Berman HM et al., (2000), The Protein Data Bank”. DOI: 10.2210/rcsb_pdb/pdb-cit-anal-2017
- Bella, J, Eaton, M, Brodsky, B and Berman, HM. 1994. Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution. Science, 266: 75–81. DOI: 10.1126/science.7695699
- Berman, HM, Henrick, K and Nakamura, H. 2003. Announcing the worldwide Protein Data Bank. Nat. Struct. Biol., 10: 980. DOI: 10.1038/nsb1203-980
- Berman, HM, Westbrook, J, Feng, Z, Gilliland, G, Bhat, TN, Weissig, H, Shindyalov, IN and Bourne, PE. 2000. The Protein Data Bank. Nucleic Acids Res, 28: 235–42. DOI: 10.1093/nar/28.1.235
- Bjorkman, PJ, Saper, MA, Samraoui, B, Bennett, WS, Strominger, JL and Wiley, DC. 1987. Structure of the human class I histocompatibility antigen, HLA-A2. Nature, 329: 506–12. DOI: 10.1038/329506a0
- Bolin, JT, Filman, DJ, Matthews, DA, Hamlin, RC and Kraut, J. 1982. Crystal structures of Escherichia coli and Lactobacillus casei dihydrofolate reductase refined at 1.7 A resolution. I. General features and binding of methotrexate. J Biol Chem, 257: 13650–62. DOI: 10.2210/pdb4dfr/pdb
- Bolton, W and Perutz, MF. 1970. Three dimensional fourier synthesis of horse deoxyhaemoglobin at 2.8 Ångstrom units resolution. Nature, 228: 551–2. DOI: 10.1038/228551a0
- Bousfield, D, McEntyre, J, Velankar, S, Papadatos, G, Bateman, A, Cochrane, G, Kim, JH, Graef, F, Vartak, V, Alako, B and Blomberg, N. 2016. Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources. F1000Res, 5. DOI: 10.12688/f1000research.7911.1
- Bronmann, L and Williams, R. 2020. An Evaluation of Percentile Measures of Citation Impact, and a Proposal for Making Them Better. arXiv, arXiv:2001.04290.
- Brzozowski, AM, Derewenda, U, Derewenda, ZS, Dodson, GG, Lawson, DM, Turkenburg, JP, Bjorkling, F, Huge-Jensen, B, Patkar, SA and Thim, L. 1991. A model for interfacial activation in lipases from the structure of a fungal lipase-inhibitor complex. Nature, 351: 491–4. DOI: 10.1038/351491a0
- Burley, SK, Berman, HM, Bhikadiya, C, Bi, C, Chen, L, Di Costanzo, L, Christie, C, Dalenberg, K, Duarte, JM, Dutta, S, Feng, Z, Ghosh, S, Goodsell, DS, Green, RK, Guranovic, V, Guzenko, D, Hudson, BP, Kalro, T, Liang, Y, Lowe, R, Namkoong, H, Peisach, E, Periskova, I, Prlic, A, Randle, C, Rose, A, Rose, P, Sala, R, Sekharan, M, Shao, C, Tan, L, Tao, YP, Valasatava, Y, Voigt, M, Westbrook, J, Woo, J, Yang, H, Young, J, Zhuravleva, M and Zardecki, C. 2019. RCSB Protein Data Bank: Biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. Nucleic Acids Res, 47: D464–D474. DOI: 10.1093/nar/gky1004
- Burley, SK, Berman, HM, Christie, C, Duarte, JM, Feng, Z, Westbrook, J, Young, J and Zardecki, C. 2018. RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education. Protein Sci, 27: 316–330. DOI: 10.1002/pro.3331
- Castellani, F, van Rossum, B, Diehl, A, Schubert, M, Rehbein, K and Oschkinat, H. 2002. Structure of a protein determined by solid-state magic-angle-spinning NMR spectroscopy. Nature, 420: 98–102. DOI: 10.1038/nature01070
- Chapman, HN, Fromme, P, Barty, A, White, TA, Kirian, RA, Aquila, A, Hunter, MS, Schulz, J, DePonte, DP, Weierstall, U, Doak, RB, Maia, FR, Martin, AV, Schlichting, I, Lomb, L, Coppola, N, Shoeman, RL, Epp, SW, Hartmann, R, Rolles, D, Rudenko, A, Foucar, L, Kimmel, N, Weidenspointner, G, Holl, P, Liang, M, Barthelmess, M, Caleman, C, Boutet, S, Bogan, MJ, Krzywinski, J, Bostedt, C, Bajt, S, Gumprecht, L, Rudek, B, Erk, B, Schmidt, C, Homke, A, Reich, C, Pietschner, D, Struder, L, Hauser, G, Gorke, H, Ullrich, J, Herrmann, S, Schaller, G, Schopper, F, Soltau, H, Kuhnel, KU, Messerschmidt, M, Bozek, JD, Hau-Riege, SP, Frank, M, Hampton, CY, Sierra, RG, Starodub, D, Williams, GJ, Hajdu, J, Timneanu, N, Seibert, MM, Andreasson, J, Rocker, A, Jonsson, O, Svenda, M, Stern, S, Nass, K, Andritschke, R, Schroter, CD, Krasniqi, F, Bott, M, Schmidt, KE, Wang, X, Grotjohann, I, Holton, JM, Barends, TR, Neutze, R, Marchesini, S, Fromme, R, Schorb, S, Rupp, D, Adolph, M, Gorkhover, T, Andersson, I, Hirsemann, H, Potdevin, G, Graafsma, H, Nilsson, B and Spence, JC. 2011. Femtosecond X-ray protein nanocrystallography. Nature, 470: 73–7. DOI: 10.2210/pdb3pcq/pdb
- Cherezov, V, Rosenbaum, DM, Hanson, MA, Rasmussen, SG, Thian, FS, Kobilka, TS, Choi, HJ, Kuhn, P, Weis, WI, Kobilka, BK and Stevens, RC. 2007. High-resolution crystal structure of an engineered human 2-adrenergic G protein-coupled receptor. Science, 318: 1258–65. DOI: 10.1126/science.1150577
- Clarivate Analytics Web of ScienceTM. © Copyright Clarivate Analytics 2019, All rights reserved.
- Colavizza, G, Hrynaszkiewicz, I, Staden, I, Whitaker, K and McGillivray, B. 2019. The citation advantage of linking publications to research data. arXiv, arXiv:1907.02565 [cs.DL]. DOI: 10.1371/journal.pone.0230416
- Dahiyat, BI and Mayo, SL. 1997. De novo protein design: Fully automated sequence selection. Science, 278: 82–7. DOI: 10.1126/science.278.5335.82
- Diamandis, EP. 2017. The Journal Impact Factor is under attack – use the CAPCI factor instead. BMC Med, 15(1): 9. DOI: 10.1186/s12916-016-0773-5
- Doyle, DA, Morais Cabral, J, Pfuetzner, RA, Kuo, A, Gulbis, JM, Cohen, SL, Chait, BT and MacKinnon, R. 1998. The structure of the potassium channel: Molecular basis of K+ conduction and selectivity. Science, 280: 69–77. DOI: 10.1126/science.280.5360.69
- Drew, HR, Wing, RM, Takano, T, Broka, C, Tanaka, S, Itakura, K and Dickerson, RE. 1981. Structure of a B-DNA dodecamer: Conformation and dynamics. Proc. Natl. Acad. Sci. U.S.A., 78: 2179–2183. DOI: 10.1073/pnas.78.4.2179
- Ferreira, KN, Iverson, TM, Maghlaoui, K, Barber, J and Iwata, S. 2004. Architecture of the photosynthetic oxygen-evolving center. Science, 303: 1831–8. DOI: 10.2210/pdb1s5l/pdb
- Fitzgerald, PMD, Westbrook, JD, Bourne, PE, McMahon, B, Watenpaugh, KD and Berman, HM. 2005.
4.5 Macromolecular dictionary (mmCIF) . In: Hall, SR and Mcmahon, B (Eds.), International Tables for Crystallography G. Definition and exchange of crystallographic data. Dordrecht, The Netherlands: Springer. DOI: 10.1107/97809553602060000745 - Goodsell, DS, Zardecki, C, Berman, HM and Burley, SK. 2019. Insights from 20 Years of the Molecule of the Month. Biochemistry and Molecular Biology Education, submitted. DOI: 10.1096/fasebj.2020.34.s1.02238
- He, XM and Carter, DC. 1992. Atomic structure and chemistry of human serum albumin. Nature, 358: 209–15. DOI: 10.1038/358209a0
- Henderson, R, Baldwin, JM, Ceska, TA, Zemlin, F, Beckmann, E and Downing, KH. 1990. Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. J Mol Biol, 213: 899–929. DOI: 10.1016/S0022-2836(05)80271-2
- Hersel, U, Dahmen, C and Kessler, H. 2003. RGD modified polymers: Biomaterials for stimulated cell adhesion and beyond. Biomaterials, 24: 4385–415. DOI: 10.1016/S0142-9612(03)00343-0
- Hoang, QQ, Sicheri, F, Howard, AJ and Yang, DS. 2003. Bone recognition mechanism of porcine osteocalcin from crystal structure. Nature, 425: 977–80. DOI: 10.1038/nature02079
- Huang, YH, Rose, PW and Hsu, CN. 2015. Citing a Data Repository: A Case Study of the Protein Data Bank. PLoS One, 10: e0136631. DOI: 10.1371/journal.pone.0136631
- Humphrey, W, Dalke, A and Schulten, K. 1996. VMD: Visual molecular dynamics. J Mol Graph, 14: 33–38. DOI: 10.1016/0263-7855(96)00018-5
- Jaakola, VP, Griffith, MT, Hanson, MA, Cherezov, V, Chien, EY, Lane, JR, Ijzerman, AP and Stevens, RC. 2008. The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist. Science, 322: 1211–7. DOI: 10.1126/science.1164772
- Jordan, P, Fromme, P, Witt, HT, Klukas, O, Saenger, W and Krauss, N. 2001. Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution. Nature, 411: 909–17. DOI: 10.1038/35082000
- Kendrew, JC, Dickerson, RE, Strandberg, BE, Hart, RG, Davies, DR, Phillips, DC and Shore, VC. 1960. Structure of myoglobin: A three-dimensional Fourier synthesis at 2 A. resolution. Nature, 185: 422–7. DOI: 10.1038/185422a0
- Kinjo, AR, Bekker, GJ, Wako, H, Endo, S, Tsuchiya, Y, Sato, H, Nishi, H, Kinoshita, K, Suzuki, H, Kawabata, T, Yokochi, M, Iwata, T, Kobayashi, N, Fujiwara, T, Kurisu, G and Nakamura, H. 2018. New tools and functions in data-out activities at Protein Data Bank Japan (PDBj). Protein Sci., 27: 95–102. DOI: 10.1002/pro.3273
- Koelblinger, D, Zimmermann, G, Weineck, SB and Kiesslich, T. 2019. Size matters! Association between journal size and longitudinal variability of the Journal Impact Factor. PLoS ONE, 14(11): e0225360. DOI: 10.1371/journal.pone.0225360
- Koepke, J, Hu, X, Muenke, C, Schulten, K and Michel, H. 1996. The crystal structure of the light-harvesting complex II (B800–850) from Rhodospirillum molischianum. Structure, 4, 581–97. DOI: 10.1016/S0969-2126(96)00063-9
- Kuhlman, B, Dantas, G, Ireton, GC, Varani, G, Stoddard, BL and Baker, D. 2003. Design of a novel globular protein fold with atomic-level accuracy. Science, 302: 1364–8. DOI: 10.1126/science.1089427
- Lam, PY, Jadhav, PK, Eyermann, CJ, Hodge, CN, Ru, Y, Bacheler, LT, Meek, JL, Otto, MJ, Rayner, MM, Wong, YN, et al. 1994. Rational design of potent, bioavailable, nonpeptide cyclic ureas as HIV protease inhibitors. Science, 263: 380–4. DOI: 10.1126/science.8278812
- Leahy, DJ, Aukhil, I and Erickson, HP. 1996. 2.0 A crystal structure of a four-domain segment of human fibronectin encompassing the RGD loop and synergy region. Cell, 84: 155–64. DOI: 10.1016/S0092-8674(00)81002-8
- Loll, B, Kern, J, Saenger, W, Zouni, A and Biesiadka, J. 2005. Towards complete cofactor arrangement in the 3.0 A resolution structure of photosystem II. Nature, 438: 1040–4. DOI: 10.1038/nature04224
- Luger, K, Mader, AW, Richmond, RK, Sargent, DF and Richmond, TJ. 1997. Crystal structure of the nucleosome core particle at 2.8Å resolution. Nature, 389: 251–260. DOI: 10.1038/38444
- Markosian, C, Di Costanzo, L, Sekharan, M, Shao, C, Burley, SK and Zardecki, C. 2018. Analysis of impact metrics for the Protein Data Bank. Sci Data, 5: 180212. DOI: 10.1038/sdata.2018.212
- Morris, C. 2018. The Life Cycle of Structural Biology Data. Data Science Journal, 17: 26. DOI: 10.5334/dsj-2018-026
- Muller, K, Faeh, C and Diederich, F. 2007. Fluorine in pharmaceuticals: Looking beyond intuition. Science, 317: 1881–6. DOI: 10.1126/science.1131943
- Neidigh, JW, Fesinmeyer, RM and Andersen, NH. 2002. Designing a 20-residue protein. Nat Struct Biol, 9: 425–30. DOI: 10.1038/nsb798
- Nel, AE, Madler, L, Velegol, D, Xia, T, Hoek, EM, Somasundaran, P, Klaessig, F, Castranova, V and Thompson, M. 2009. Understanding biophysicochemical interactions at the nano-bio interface. Nat Mater, 8: 543–57. DOI: 10.1038/nmat2442
- Nicolet, Y, Piras, C, Legrand, P, Hatchikian, CE and Fontecilla-Camps, JC. 1999. Desulfovibrio desulfuricans iron hydrogenase: The structure shows unusual coordination to an active site Fe binuclear center. Structure, 7: 13–23. DOI: 10.1016/S0969-2126(99)80005-7
- Orgel, JP, Irving, TC, Miller, A and Wess, TJ. 2006. Microfibrillar structure of type I collagen in situ. Proc Natl Acad Sci U S A, 103: 9001–5. DOI: 10.1073/pnas.0502718103
- Palczewski, K, Kumasaka, T, Hori, T, Behnke, CA, Motoshima, H, Fox, BA, Le Trong, I, Teller, DC, Okada, T, Stenkamp, RE, Yamamoto, M and Miyano, M. 2000. Crystal structure of rhodopsin: A G protein-coupled receptor. Science, 289: 739–45. DOI: 10.1126/science.289.5480.739
- Parkinson, GN, Lee, MP and Neidle, S. 2002. Crystal structure of parallel quadruplexes from human telomeric DNA. Nature, 417: 876–80. DOI: 10.1038/nature755
- Pendlebury, DA. 2009. The use and misuse of journal metrics and other citation indicators. Arch Immunol Ther Exp (Warsz), 57(1): 1–11. DOI: 10.1007/s00005-009-0008-y
- Perutz, MF, Rossmann, MG, Cullis, AF, Muirhead, H, Will, G and North, ACT. 1960. Structure of haemoglobin: A three-dimensional Fourier synthesis at 5.5 Å resolution, obtained by X-ray analysis. Nature, 185: 416–422. DOI: 10.1038/185416a0
- Peters, JW, Lanzilotta, WN, Lemon, BJ and Seefeldt, LC. 1998. X-ray crystal structure of the Fe-only hydrogenase (CpI) from Clostridium pasteurianum to 1.8 angstrom resolution. Science, 282: 1853–8. DOI: 10.1126/science.282.5395.1853
- Piontek, K, Antorini, M and Choinowski, T. 2002. Crystal structure of a laccase from the fungus Trametes versicolor at 1.90-A resolution containing a full complement of coppers. J Biol Chem, 277: 37663–9. DOI: 10.1074/jbc.M204571200
- Protein Data Bank. 1971. Crystallography: Protein Data Bank. Nature (London), New Biol., 233: 223–223. DOI: 10.1038/newbio233223b0
- Rasmussen, SG, Choi, HJ, Rosenbaum, DM, Kobilka, TS, Thian, FS, Edwards, PC, Burghammer, M, Ratnala, VR, Sanishvili, R, Fischetti, RF, Schertler, GF, Weis, WI and Kobilka, BK. 2007. Crystal structure of the human beta2 adrenergic G-protein-coupled receptor. Nature, 450: 383–7. DOI: 10.1038/nature06325
- Rush, TS,
3rd , Grant, JA, Mosyak, L and Nicholls, A. 2005. A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction. J Med Chem, 48: 1489–95. DOI: 10.1021/jm040163o - Schneider, JW, Van Leeuwen, T, Visser, M and Aagaard, K. 2019. Examining national citation impact by comparing developments in a fixed and a dynamic journal set. Scientometrics, 973–985. DOI: 10.1007/s11192-019-03082-3
- Sheldrick, GM. 2008. A short history of SHELX. Acta Crystallogr A, 64: 112–22. DOI: 10.1107/S0108767307043930
- Song, L, Hobaugh, MR, Shustak, C, Cheley, S, Bayley, H and Gouaux, JE. 1996. Structure of staphylococcal alpha-hemolysin, a heptameric transmembrane pore. Science, 274: 1859–66. DOI: 10.1126/science.274.5294.1859
- Sugio, S, Kashima, A, Mochizuki, S, Noda, M and Kobayashi, K. 1999. Crystal structure of human serum albumin at 2.5 A resolution. Protein Eng, 12: 439–46. DOI: 10.1093/protein/12.6.439
- Umena, Y, Kawakami, K, Shen, JR and Kamiya, N. 2011. Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 A. Nature, 473: 55–60. DOI: 10.1038/nature09913
- Van Noorden, R, Maher, B and Nuzzo, R. 2014. The top 100 papers. Nature, 514: 550–3. DOI: 10.1038/514550a
- Vassilev, LT, Vu, BT, Graves, B, Carvajal, D, Podlaski, F, Filipovic, Z, Kong, N, Kammlott, U, Lukacs, C, Klein, C, Fotouhi, N and Liu, EA. 2004. In vivo activation of the p53 pathway by small-molecule antagonists of MDM2. Science, 303: 844–8. DOI: 10.1126/science.1092472
- Velankar, S, van Ginkel, G, Alhroub, Y, Battle, GM, Berrisford, JM, Conroy, MJ, Dana, JM, Gore, SP, Gutmanas, A, Haslam, P, Hendrickx, PM, Lagerstedt, I, Mir, S, Fernandez Montecelo, MA, Mukhopadhyay, A, Oldfield, TJ, Patwardhan, A, Sanz-Garcia, E, Sen, S, Slowley, RA, Wainwright, ME, Deshpande, MS, Iudin, A, Sahni, G, Salavert Torres, J, Hirshberg, M, Mak, L, Nadzirin, N, Armstrong, DR, Clark, AR, Smart, OS, Korir, PK and Kleywegt, GJ. 2016. PDBe: Improved accessibility of macromolecular structure data from PDB and EMDB. Nucleic Acids Res, 44: D385–95. DOI: 10.1093/nar/gkv1047
- Warne, T, Serrano-Vega, MJ, Baker, JG, Moukhametzianov, R, Edwards, PC, Henderson, R, Leslie, AG, Tate, CG and Schertler, GF. 2008. Structure of a beta1-adrenergic G-protein-coupled Receptor. Nature, 454: 486–91. DOI: 10.1038/nature07101
- Watson, HC. 1969. The stereochemistry of the protein myoglobin. Prog. Stereochem., 4: 299.
- Weber, PC, Ohlendorf, DH, Wendoloski, JJ and Salemme, FR. 1989. Structural origins of high-affinity biotin binding to streptavidin. Science, 243: 85–8. DOI: 10.1126/science.2911722
- Westbrook, JD and Burley, SK. 2019. How Structural Biologists and the Protein Data Bank Contributed to Recent FDA New Drug Approvals. Structure, 27: 211–217. DOI: 10.1016/j.str.2018.11.007
- Wilkinson, MD, Dumontier, M, Aalbersberg, IJ, Appleton, G, Axton, M, Baak, A, Blomberg, N, Boiten, JW, da Silva Santos, LB, Bourne, PE, Bouwman, J, Brookes, AJ, Clark, T, Crosas, M, Dillo, I, Dumon, O, Edmunds, S, Evelo, CT, Finkers, R, Gonzalez-Beltran, A, Gray, AJ, Groth, P, Goble, C, Grethe, JS, Heringa, J, T’Hoen, PA, Hooft, R, Kuhn, T, Kok, R, Kok, J, Lusher, SJ, Martone, ME, Mons, A, Packer, AL, Persson, B, Rocca-Serra, P, Roos, M, van Schaik, R, Sansone, SA, Schultes, E, Sengstag, T, Slater, T, Strawn, G, Swertz, MA, Thompson, M, van der Lei, J, van Mulligen, E, Velterop, J, Waagmeester, A, Wittenburg, P, Wolstencroft, K, Zhao, J and Mons, B. 2016. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data, 3: 1–9. DOI: 10.1038/sdata.2016.18
- wwPDB consortium. 2019. Protein Data Bank: The single global archive for 3D macromolecular structure data. Nucleic Acids Res, 47: D520–D528. DOI: 10.1093/nar/gky949
- Young, JY, Westbrook, JD, Feng, Z, Peisach, E, Persikova, I, Sala, R, Sen, S, Berrisford, JM, Swaminathan, GJ, Oldfield, TJ, Gutmanas, A, Igarashi, R, Armstrong, DR, Baskaran, K, Chen, L, Chen, M, Clark, AR, Costanzo, LD, Dimitropoulos, D, Gao, G, Ghosh, S, Gore, S, Guranovic, V, Hendrickx, PMS, Hudson, BP, Ikegawa, Y, Kengaku, Y, Lawson, CL, Liang, Y, Mak, L, Mukhopadhyay, A, Narayanan, B, Nishiyama, K, Patwardhan, A, Sahni, G, Sanz-García, E, Sato, J, Sekharan, MR, Shao, C, Smart, OS, Tan, L, Ginkel, GV, Yang, H, Zhuravleva, MA, Markley, JL, Nakamura, H, Kurisu, G, Kleywegt, GJ, Velankar, S, Berman, HM and Burley, SK. 2018. Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. Database, 2018: bay002. DOI: 10.1093/database/bay002
- Young, JY, Westbrook, JD, Feng, Z, Sala, R, Peisach, E, Oldfield, TJ, Sen, S, Gutmanas, A, Armstrong, DR, Berrisford, JM, Chen, L, Chen, M, Di Costanzo, L, Dimitropoulos, D, Gao, G, Ghosh, S, Gore, S, Guranovic, V, Hendrickx, PM, Hudson, BP, Igarashi, R, Ikegawa, Y, Kobayashi, N, Lawson, CL, Liang, Y, Mading, S, Mak, L, Mir, MS, Mukhopadhyay, A, Patwardhan, A, Persikova, I, Rinaldi, L, Sanz-Garcia, E, Sekharan, MR, Shao, C, Swaminathan, GJ, Tan, L, Ulrich, EL, van Ginkel, G, Yamashita, R, Yang, H, Zhuravleva, MA, Quesada, M, Kleywegt, GJ, Berman, HM, Markley, JL, Nakamura, H, Velankar, S and Burley, SK. 2017. OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive. Structure, 25: 536–545. DOI: 10.1016/j.str.2017.01.004
- Zheng, J, Birktoft, JJ, Chen, Y, Wang, T, Sha, R, Constantinou, PE, Ginell, SL, Mao, C and Seeman, NC. 2009. From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal. Nature, 461: 74–7. DOI: 10.1038/nature08274
- Zweib, C, Kim, J and Adhya, S. 1989. DNA bending by negative regulatory proteins: Gal and Lac repressor. Gene Develop., 3: 606–611. DOI: 10.1101/gad.3.5.606
