References
- ACM. 2018. Software and Data Artifacts in the ACM Digital Library.
https://www.acm.org/publications/artifacts . - Allison, DB, Shiffrin, RM and Stodden, V. 2018. Reproducibility of research: Issues and proposed remedies. Proceedings of the National Academy of Sciences, 115(11): 2561–2562. DOI: 10.1073/pnas.1802324115
- Barba, L. 2018. Terminologies for Reproducible Research.
https://arxiv.org/abs/1802.03311 . - Borwein, J and Bailey, D. 2013. The Reinhart-Rogoff error – or how not to Excel at economics.
http://theconversation.com/the-reinhart-rogoff-error-or-how-not-to-excel-at-economics-13646 . - Chen, X, Dallmeier-Tiessen, S, Dasler, R, Feger, S, Fokianos, P, Gonzalez, JB, Neubert, S, et al. 2019. Open is not enough. Nature Physics, 15: 113–119. DOI: 10.1038/s41567-018-0342-2
- Cruz, M, Kurapati, S and Türkyilmaz-van der Velden, Y. 2018. Work-shop Report: Software Reproducibility – How to put it into practice?
https://openworking.wordpress.com/2018/06/26/workshop-report-software-reproducibility-how-to-put-it-into-practice/ . DOI: 10.31219/osf.io/z48cm - Darpa open catalogue. n.d.
https://www.darpa.mil/opencatalog . - Digital curation centre. n.d.
https://www.dcc.ac.uk . - Engineering & Physical Sciences Research Council. 2017. Research Software Engineer Fellowships II.
https://epsrc.ukri.org/funding/calls/research-software-engineer-fellowships-ii/ . - Engineering & Physical Sciences Research Council. 2018. EPSRC CDT Outline call.
https://www.epsrc.ac.uk/files/funding/calls/2018/2018cdtsoutlinescall/ (Accessed: 2019-08-12). - F1000Research. n.d.
https://f1000research.com/ (Accessed: 2019-08-12). - Figshare. n.d.
https://figshare.com (Accessed: 2019-08-12). - Herndon, T, Ash, M and Pollin, R. 2013, 12. Does high public debt consistently stifle economic growth? A critique of Reinhart and Rogoff. Cambridge J. Economics, 38(2): 257–279. DOI: 10.1093/cje/bet075
- Hettrick, S, Antonioletti, MLC, Chue Hong, N, Crouch, S, De Roure, D, Sufi, S, et al. 2014. UK research software survey 2014. DOI: 10.5281/zenodo.14809
- Horizon 2020 Programme. 2016. Guidelines on FAIR Data Management in Horizon 2020.
http://ec.europa.eu/research/participants/data/ref/h2020/grantsmanual/hi/oa_pilot/h2020-hi-oa-data-mgt_en.pdf (Accessed: 2019-08-12). - Jiménez, R, Kuzak, M, Alhamdoosh, M, Barker, M, Batut, B, Borg, M, Crouch, S, et al. 2017. Four simple recommendations to encourage best practices in research software [version 1; peer review: 3 approved]. F1000Research, 6(876). DOI: 10.12688/f1000research.11407.1
- Jones, C, Matthews, B, Gent, I, Griffin, T and Tedds, J. 2016. Persistent Identification and Citation of Software. International Journal of Data Curation, 11(2). DOI: 10.2218/ijdc.v11i2.422
- Lyon, L, Jeng, W and Mattern, E. 2017. Research transparency: A preliminary study of disciplinary conceptualisation, drivers, tools and support services. International Journal of Data Curation, 12(1): 46–64. DOI: 10.2218/ijdc.v12i1.530
- Mallona, I and Peidano, M. 2017. Truke, a web tool to check for and handle excel misidentified gene symbols. BMC Genomics, 18(242). DOI: 10.1186/s12864-017-3631-8
- Martone, M. (ed.). 2014. Data citation synthesis group: Joint declaration of data citation principles. DOI: 10.25490/a97f-egyk
- Mawdsley, D, Haines, R and Jay, C. 2017. Reproducible Research is Software Engineering.
http://idinteraction.cs.manchester.ac.uk/RSE2017Talk/ReproducibleResearchIsRSE.html#/ (Accessed: 2019-08-12). - Mesnard, O and Barba, LA. 2017. Reproducible and replicable computational fluid dynamics: It’s harder than you think. Computing in Science Engineering, 19(4): 44–55. DOI: 10.1109/MCSE.2017.3151254
- Munafò, M, Nosek, B, Bishop, D, Button, K, Chambers, C, du Sert, N, Ioannidis, J, et al. 2017. A manifesto for reproducible science. Nature Human Behaviour, 1: 0021. DOI: 10.1038/s41562-016-0021
- Nature. n.d. Nature Availability Advice.
http://www.nature.com/authors/policies/availability.html . - Plesser, HE. 2018. Reproducibility vs. replicability: A brief history of a confused terminology. Frontiers in Neuroinformatics, 11: 76. DOI: 10.3389/fninf.2017.00076
- Reinhart, C and Rogoff, K. 2010. Growth in a Time of Debt. American Economic Review, 100: 573–78. DOI: 10.1257/aer.100.2.573
- Research Councils UK. 2016. Concordat on Open Research Data.
https://www.ukri.org/files/legacy/documents/concordatonopenresearchdata-pdf/ . - Smith, AM, Katz, DS, Niemeyer, KE and FORCE11 Software Citation Working Group. 2016. Software citation principles. PeerJ Computer Science, 2, e86. DOI: 10.7717/peerj-cs.86
- Software Carpentry. n.d.
https://www.software-carpentry.org . - Software Sustainability Institute. n.d.
https://www.software.ac.uk . - UK Research Software Engineer Association. n.d.
http://rse.ac.uk/ . - Wilkinson, MD, Dumontier, M, Aalbersberg, IJ, Appleton, G, Axton, M, Baak, A, Mons, B, et al. 2016. The FAIR Guiding Principles for scientific data management and stewardship. Scientific data, 3. DOI: 10.1038/sdata.2016.18
- Wilson, G, Bryan, J, Cranston, K, Kitzes, J, Nederbragt, L and Teal, TK. 2017. Good enough practices in scientific computing. PLoS computational biology, 13(6):
e1005510 . DOI: 10.1371/journal.pcbi.1005510 - WSSSPE. n.d.
http://wssspe.researchcomputing.org.uk/proceedings/ . - Zenodo. n.d.
https://zenodo.org . - Ziemann, M, Eren, Y and El-Osta, A. 2016. Gene name errors are widespread in the scientific literature. Genome Biology, 17: 1–3. DOI: 10.1186/s13059-016-1044-7