References
- Ananthakrishnan, R, Chard, K, Foster, I and Tuecke, S. 2015. Globus Platform-as-a-Service for Collaborative Science Applications. Concurrency and computation: Practice & experience, 27(2): 290–305. DOI: 10.1002/cpe.3262
- Aronson, SJ and Rehm, HL. 2015. Building the foundation for genomics in precision medicine. Nature, 526(7573): 336–342. DOI: 10.1038/nature15816
- Christensen, KD, Dukhovny, D, Siebert, U and Green, RC. 2015. Assessing the Costs and Cost-Effectiveness of Genomic Sequencing. Journal of personalized medicine, 5(4): 470–486. DOI: 10.3390/jpm5040470
- Cock, PJA, Fields, CJ, Goto, N, Heuer, ML and Rice, PM. 2010. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research, 38(6): 1767–1771. DOI: 10.1093/nar/gkp1137
- de Vries, J, Tindana, P, Littler, K, Ramsay, M, Rotimi, C, Abayomi, A, Mulder, N and Mayosi, BM. 2015. The H3Africa policy framework: Negotiating fairness in genomics. Trends in Genetics, 31(3): 117–119. DOI: 10.1016/j.tig.2014.11.004
- Dyke, SOM, Linden, M, Lappalainen, I, De Argila, JR, Carey, K, Lloyd, D, Spalding, JD, Cabili, MN, Kerry, G, Foreman, J, Cutts, T, Shabani, M, Rodriguez, LL, Haeussler, M, Walsh, B, Jiang, X, Wang, S, Perrett, D, Boughtwood, T, Matern, A and Flicek, P. 2018. Registered access: Authorizing data access. European Journal of Human Genetics, 26(12): 1721–1731. DOI: 10.1038/s41431-018-0219-y
- Foster, I. 2011. Globus online: Accelerating and democratizing science through cloud-based services. IEEE Internet Comput, 15: 70–73. DOI: 10.1109/MIC.2011.64
- Goldfeder, RL, Wall, DP, Khoury, MJ, Ioannidis, JPA and Ashley, EA. 2017. Human Genome Sequencing at the Population Scale: A Primer on High-Throughput DNA Sequencing and Analysis. American Journal of Epidemiology, 186(8): 1000–1009. DOI: 10.1093/aje/kww224
- H3Africa Consortium, Rotimi, C, Abayomi, A, Abimiku, A, Adabayeri, VM, Adebamowo, C, Adebiyi, E, Ademola, AD, Adeyemo, A, Adu, D, Affolabi, D, Agongo, G, Ajayi, S, Akarolo-Anthony, S, Akinyemi, R, Akpalu, A, Alberts, M, Alonso Betancourt, O, Alzohairy, AM, Ameni, G, et al. 2014. Research capacity. Enabling the genomic revolution in Africa. Science, 344(6190): 1346–1348.
- Hsi-Yang Fritz, M, Leinonen, R, Cochrane, G and Birney, E. 2011. Efficient storage of high throughput DNA sequencing data using reference-based compression. Genome Research, 21(5): 734–740. DOI: 10.1101/gr.114819.110
- Lappalainen, I, Almeida-King, J, Kumanduri, V, Senf, A, Spalding, JD, Ur-Rehman, S, Saunders, G, Kandasamy, J, Caccamo, M, Leinonen, R, Vaughan, B, Laurent, T, Rowland, F, Marin-Garcia, P, Barker, J, Jokinen, P, Torres, AC, de Argila, JR, Llobet, OM, Medina, I and Flicek, P. 2015. The European Genome-phenome Archive of human data consented for biomedical research. Nature Genetics, 47(7): 692–695. DOI: 10.1038/ng.3312
- Madduri, RK, Sulakhe, D, Lacinski, L, Liu, B, Rodriguez, A, Chard, K, Dave, UJ and Foster, IT. 2014. Experiences Building Globus Genomics: A Next-Generation Sequencing Analysis Service using Galaxy, Globus, and Amazon Web Services. Concurrency and computation: practice & experience, 26(13): 2266–2279. DOI: 10.1002/cpe.3274
- Mahdi, MSR, Aziz, MMA, Alhadidi, D and Mohammed, N. 2018. Secure similar patients query on encrypted genomic data. IEEE journal of biomedical and health informatics. DOI: 10.1109/JBHI.2018.2881086
- Mulder, N, Abimiku, A, Adebamowo, SN, de Vries, J, Matimba, A, Olowoyo, P, Ramsay, M, Skelton, M and Stein, DJ. 2018. H3Africa: Current perspectives. Pharmacogenomics and personalized medicine, 11: 59–66. DOI: 10.2147/PGPM.S141546
- Mulder, NJ, Adebiyi, E, Adebiyi, M, Adeyemi, S, Ahmed, A, Ahmed, R, Akanle, B, Alibi, M, Armstrong, DL, Aron, S, Ashano, E, Baichoo, S, Benkahla, A, Brown, DK, Chimusa, ER, Fadlelmola, FM, Falola, D, Fatumo, S, Ghedira, K, Ghouila, A and H3ABioNet Consortium, as members of the H3Africa Consortium. 2017. Development of bioinformatics infrastructure for genomics research. Global heart, 12(2): 91–98. DOI: 10.1016/j.gheart.2017.01.005
- Mulder, NJ, Adebiyi, E, Alami, R, Benkahla, A, Brandful, J, Doumbia, S, Everett, D, Fadlelmola, FM, Gaboun, F, Gaseitsiwe, S, Ghazal, H, Hazelhurst, S, Hide, W, Ibrahimi, A, Jaufeerally Fakim, Y, Jongeneel, CV, Joubert, F, Kassim, S, Kayondo, J, Kumuthini, J and H3ABioNet Consortium. 2016. H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa. Genome Research, 26(2): 271–277. DOI: 10.1101/gr.196295.115
- Popejoy, AB and Fullerton, SM. 2016. Genomics is failing on diversity. Nature, 538(7624): 161–164. DOI: 10.1038/538161a
- Prokop, JW, May, T, Strong, K, Bilinovich, SM, Bupp, C, Rajasekaran, S, Worthey, EA and Lazar, J. 2018. Genome sequencing in the clinic: The past, present, and future of genomic medicine. Physiological Genomics, 50(8): 563–579. DOI: 10.1152/physiolgenomics.00046.2018
- Shabani, M, Dyke, SOM, Joly, Y and Borry, P. 2015. Controlled Access under Review: Improving the Governance of Genomic Data Access. PLoS Biology, 13(12):
e1002339 . DOI: 10.1371/journal.pbio.1002339