References
- Agosti M Ferro N A formal model of annotations of digital content ACM Transactions on Information Systems 2007 26 1 10.1145/1292591.1292594
- Ahn C P Alexandroff R Allende Prieto C Anderson S F Anderton T Andrews B H The Ninth Data Release of the Sloan Digital Sky Survey: First Spectroscopic Data from the SDSS-III Baryon Oscillation Spectroscopic Survey Astrophysical Journal 2012 203 21 10.1088/0067-0049/203/2/21
- Baker K S Duerr R E Parsons M A Scientific Knowledge Mobilization: Co-evolution of Data Products and Designated Communities International Journal of Digital Curation 2015 10 2 10.2218/ijdc.v10i2.346
- Baker M 1,500 scientists lift the lid on reproducibility Nature 2016 533 7604 452 454 10.1038/533452a
- Berger B Daniels N M Yu Y W Computational biology in the 21st century: scaling with compressive algorithms Communications of the ACM 2016 59 8 72 80 10.1145/2957324
- Borgman C L Big data, little data, no data: Scholarship in the networked world 2015 Cambridge, MA The MIT Press
-
Borgman
C L
Darch
P T
Sands
A E
Golshan
M S
The durability and fragility of knowledge infrastructures: Lessons learned from astronomy Proceedings of the Association for Information Science and Technology 2016 ASIS&T 53 1 10 10.1002/pra2.2016.14505301057 -
Borgman
C L
Wallis
J C
Mayernik
M S
Pepe
A
Drowning in Data: Digital library architecture to support scientific use of embedded sensor networks Joint Conference on Digital Libraries 2007 Vancouver, British Columbia, Canada Association for Computing Machinery 269 277 10.1145/1255175.1255228 - Carlson S Anderson B What Are Data? The Many Kinds of Data and Their Implications for Data Re-Use Journal of Computer-Mediated Communication 2007 12 2 635 651 10.1111/j.1083-6101.2007.00342.x
- CODATA-ICSTI Task Group on Data Citation Standards Practices Out of Cite, Out of Mind: The Current State of Practice, Policy, and Technology for the Citation of Data Data Science Journal 2013 12 CIDCR1 CIDCR75 10.2481/dsj.OSOM13-043
-
Collins
H M
Changing Order: Replication and Induction in Scientific Practice (Reprint)
1985
Chicago
University Of Chicago Press
Retrieved from:
http://www.press.uchicago.edu/ucp/books/book/chicago/C/bo3623576.html - Collins H M Evans R Rethinking Expertise 2007 Chicago University of Chicago Press 10.7208/chicago/9780226113623.001.0001
-
Crone
T J
Tolstoy
M
Magnitude of the 2010 Gulf of Mexico oil leak Science 2010 New York, N.Y. 330 6004 634 10.1126/science.1195840 -
Drummond
C
Replicability is not Reproducibility: Nor is it Good Science
ICML ’09 Proceedings of the 26th Annual International Conference on Machine Learning (The fourth workshop on evaluation methods for machine learning)
2009
Montreal, Quebec, Canada
Retrieved from:
http://cogprints.org/7691/ -
European Commission High Level Expert Group on Scientific Data
Riding the wave: How Europe can gain from the rising tide of scientific data (Final report of the High Level Expert Group on Scientific Data. A submission to the European Commission)
2010
European Union
Retrieved from:
https://www.fosteropenscience.eu/content/riding-wave-how-europe-can-gain-rising-tide-scientific-data - Faniel I M Jacobsen T E Reusing Scientific Data: How Earthquake Engineering Researchers Assess the Reusability of Colleagues’ Data Journal of Computer Supported Cooperative Work 2010 19 3–4 355 375 10.1007/s10606-010-9117-8
- González-Beltrán A Li P Zhao J Avila-Garcia M S Roos M Thompson M From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics PLOS ONE 2015 10 7 e0127612 10.1371/journal.pone.0127612
-
Goodman
A A
The COMPLETE Survey of Star-Forming Regions on its Second Birthday
Arxiv preprint astro-ph/0405554
2004
Retrieved from:
https://arxiv.org/abs/astro-ph/0405554 - Goodman A A Pepe A Blocker A W Borgman C L Cranmer K Crosas M Ten Simple Rules for the Care and Feeding of Scientific Data PLoS Computational Biology 2014 10 4 e1003542 10.1371/journal.pcbi.1003542
-
Greisen
E W
Heck
A
FITS: A Remarkable Achievement in Information Exchange Information Handling in Astronomy – Historical Vistas 2002 Netherlands Springer 71 87 Retrieved from:http://link.springer.com/chapter/10.1007/0-306-48080-8_5 - Groseth A Feldmann H Strong J E The ecology of Ebola virus Trends in Microbiology 2007 15 9 408 416 10.1016/j.tim.2007.08.001
- Jasny B R Chin G Chong L Vignieri S Again, and Again, and Again … Science 2011 334 6060 1225 10.1126/science.334.6060.1225
- Latour B Woolgar S Laboratory Life: The Social Construction of Scientific Facts 1979 Beverly Hills Sage Publications
-
Leonelli
S
Packaging small facts for re-use: databases in model organism biology
How well do facts travel
2010
325
348
Retrieved from:
https://www.researchgate.net/profile/Sabina_Leonelli/publication/233438457_Packaging_Small_Facts_for_Re-Use_Databases_in_Model_Organism_Biology/links/0912f50aa0aa49acbe000000.pdf - Lukk M Kapushesky M Nikkilä J Parkinson H Goncalves A Huber W A global map of human gene expression Nature Biotechnology 2010 28 4 322 324 10.1038/nbt0410-322
- Margolis R Derr L Dunn M Huerta M Larkin J Sheehan J The National Institutes of Health’s Big Data to Knowledge (BD2K) initiative: capitalizing on biomedical big data Journal of the American Medical Informatics Association 2014 21 6 957 958 10.1136/amiajnl-2014-002974
- Mayernik M S Metadata Realities for Cyberinfrastructure: Data Authors as Metadata Creators (PhD Dissertation) 2011 UCLA, Los Angeles, CA June 10.2139/ssrn.2042653
- Mayer-Schonberger V Cukier K Big Data: A Revolution That Will Transform How We Live, Work, and Think 2013 Boston Houghton Mifflin Harcourt
-
National Institutes of Health
Commons Home Page | Data Science at NIH
2015
Retrieved from:
https://datascience.nih.gov/commons -
National Institutes of Health
NIH Sharing Policies and Related Guidance on NIH-Funded Research Resources
2016
Retrieved from:
https://grants.nih.gov/policy/sharing.htm -
National Science Foundation
Award and Administration Guide: Data Sharing Policy
2011
Retrieved from:
https://www.nsf.gov/pubs/policydocs/pappguide/nsf11001/aag_6.jsp#VID4 -
Open Knowledge Foundation
Open Definition: Defining Open in Open Data, Open Content and Open Knowledge
2015
Retrieved from:
http://opendefinition.org/od/ -
Orelli
B
The Business of Genomic Data
2016
O’Reilly Media
Retrieved from:
http://www.oreilly.com/data/free/the-business-of-genomic-data.csp -
Organisation for Economic Co-operation Development
OECD Principles and Guidelines for Access to Research Data from Public Funding
2007
Paris
Organisation for Economic Co-Operation and Development
24
Retrieved from:
http://www.oecd.org/dataoecd/9/61/38500813.pdf -
Palmer
C L
Weber
N M
Cragin
M H
The Analytic Potential of Scientific Data: Understanding Re-use Value
Proceedings of the American Society for Information Science and Technology
2011
48
1
1
10
10.1002/meet.2011.14504801174
Retrieved from:
http://onlinelibrary.wiley.com/doi/10.1002/meet.2011.14504801174/full - Pasquetto I V Sands A E Borgman C L Exploring openness in data and science: What is “open,” to whom, when, and why? Proceedings of the Association for Information Science and Technology 2015 52 1 2 10.1002/pra2.2015.1450520100141
-
Pasquetto
I V
Sands
A E
Darch
P T
Borgman
C L
Open Data in Scientific Settings: From Policy to Practice
Proceedings of the 2016 CHI Conference on Human Factors in Computing Systems
Presented at the 2016 CHI Conference on Human Factors in Computing Systems
2016
New York, NY, USA
ACM 1585 1596 10.1145/2858036.2858543 -
Renear
A
Dubin
D
Towards identity conditions for digital documents
Proceedings of the 2003 international conference on Dublin Core and metadata applications: supporting communities of discourse and practice
Presented at the International Conference on Dublin Core and Metadata Applications
2003
Seattle, Washington
Dublin Core Metadata Initiative Retrieved from:http://www.siderean.com/dc2003/503_Paper71.pdf - Ridge N A Francesco J D Kirk H Li D Goodman A A Alves J F The COMPLETE Survey of Star-Forming Regions: Phase I Data The Astronomical Journal 2006 131 6 2921 10.1086/503704
- Rung J Brazma A Reuse of public genome-wide gene expression data Nature Reviews Genetics 2012 14 2 89 99 10.1038/nrg3394
-
Stodden
V
The scientific method in practices: Reproducibility in the computational sciences
2010
Cambridge, MA
Retrieved from:
http://ssrn.com/abstract=1550193 -
Szalay
A S
Kunszt
P Z
Thakar
A R
Gray
J
Slutz
D
The Sloan Digital Sky Survey and its archive Astronomical Data Analysis Software and Systems IX 2000 San Francisco, Calif Astronomical Society of the Pacific 216 405 Retrieved from:http://www.adass.org/adass/proceedings/adass99/O1-02/ - Tenopir C Allard S Douglass K Aydinoglu A U Wu L Read E Data Sharing by Scientists: Practices and Perceptions PLoS ONE 2011 6 6 e21101 10.1371/journal.pone.0021101
-
Thomas
B
Jenness
T
Economou
F
Greenfield
P
Hirst
P
Berry
D S
Significant Problems in FITS Limit Its Use in Modern Astronomical Research
Astronomical Data Analysis Software and Systems XXIII
2014
485
351
Retrieved from:
http://www.aspbooks.org/a/volumes/article_details/?paper_id=36249 -
Treadway
J
Hahnel
M
Leonelli
S
Penny
D
Groenewegen
D
Miyairi
N
The State of Open Data Report
2016
Figshare
Retrieved from:
https://figshare.com/articles/The_State_of_Open_Data_Report/4036398 -
Uhlir
P F
For Attribution – Developing Data Attribution and Citation Practices and Standards: Summary of an International Workshop
2012
Washington, D.C.
The National Academies Press
Retrieved from:
http://www.nap.edu/catalog.php?record_id=13564 - Vandewalle P Kovacevic J Vetterli M Reproducible Research in Signal Processing IEEE Signal Processing Magazine 2009 26 37 47 10.1109/MSP.2009.932122
-
Vilardell Nogales
M
Rasche
A
Thormann
A.
Maschke-Dutz
E
Pérez Jurado
L A
Lehrach
H
Herwig
R
Meta-analysis of heterogeneous Down Syndrome data reveals consistent genome-wide dosage effects related to neurological processes
BMC Genomics
2011
May
12
229
10.1186/1471-2164-12-229
Retrieved from:
http://repositori.upf.edu/handle/10230/23032 -
Wallis
J C
The Distribution of Data Management Responsibility within Scientific Research Groups (Ph.D. Dissertation)
2012
University of California, Los Angeles, United States – California
Retrieved from:
http://search.proquest.com/docview/1029942726/abstract?accountid=14512 - Wallis J C Data Producers Courting Data Reusers: Two Cases from Modeling Communities International Journal of Digital Curation 2014 9 1 98 109 10.2218/ijdc.v9i1.304
-
Wallis
J C
Borgman
C L
Mayernik
M S
Pepe
A
Ramanathan
N
Hansen
M A
Know Thy Sensor: Trust, Data Quality, and Data Integrity in Scientific Digital Libraries
Proceedings of the 11th European Conference on Research and Advanced Technology for Digital Libraries
2007
Budapest, Hungary: Berlin
Springer LINCS 4675 380 391 10.1007/978-3-540-74851-9_32 - Wallis J C Rolando E Borgman C L If we share data, will anyone use them? Data sharing and reuse in the long tail of science and technology PLoS ONE 2013 8 7 e67332 10.1371/journal.pone.0067332
- Wilkinson M D Dumontier M Aalbersberg Ij J Appleton G Axton M Baak A The FAIR Guiding Principles for scientific data management and stewardship Scientific Data 2016 3 160018 10.1038/sdata.2016.18
- Zimmerman A S Not by metadata alone: the use of diverse forms of knowledge to locate data for reuse International Journal on Digital Libraries 2007 7 1–2 5 16 10.1007/s00799-007-0015-8
