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Citizen Science for Mining the Biomedical Literature Cover

Citizen Science for Mining the Biomedical Literature

Open Access
|Dec 2016

References

  1. 1
    Bornmann L. Mutz R. Growth rates of modern science: A bibliometric analysis based on the number of publications and cited references Journal of the Association for Information Science and Technology 2015 66 11 2215 2222 10.1002/asi.23329
  2. 2
    Campos D. Matos S. Luis J. Biomedical named entity recognition: A survey of machine-learning tools Theory and Applications for Advanced Text Mining 2012 10.5772/51066
  3. 3
    Cox J. Oh E. Simmons B. Lintott C. Masters K. Greenhill A. Graham G. Holmes K. Defining and measuring success in online citizen science: A case study of Zooniverse Projects Comput. Sci. Eng 2015 17 4 28 41 10.1109/MCSE.2015.65
  4. 4
    Czech Z. Kowalczyk A. Shao L. Cheng X. Quan S. Bai Y. Novel acrylic pressure-sensitive adhesive (PSA) containing silver particles Journal of Adhesion Science and Technology 2013 27 13 1446 1454 10.1080/01694243.2012.742402
  5. 5
    Doğan R. Leaman R. Lu Z. NCBI disease corpus: A resource for disease name recognition and concept normalization Journal of Biomedical Informatics 2014 47 1 10 10.1016/j.jbi.2013.12.006
  6. 6
    Doğan R. Lu Z. An improved corpus of disease mentions in PubMed citations Proceedings of the 2012 Workshop on Biomedical Natural Language Processing 2012 91 99
  7. 7
    Freitag A. Pfeffer M. Process, Not Product: Investigating Recommendations for Improving Citizen Science “Success” PLoS ONE 2013 8 5 e64079 10.1371/journal.pone.0064079
  8. 8
    Good B. Nanis M. Wu C. Su A.I. Microtask crowdsourcing for disease mention and annotation in PubMed Abstracts Pacific Symposium on Biocomputing 2015 10.1142/9789814644730_0028
  9. 9
    Howe D. Costanzo M. Fey P. Gojobori T. Hannick L. Hide W. Hill D. Kania R. Schaeffer M. St Pierre S. Twigger S. White O. Yon Rhee S. Big data: The future of biocuration Nature 2008 455 7209 47 50 10.1038/455047a
  10. 10
    Khatib F. Cooper S. Tyka M. Xu K. Makedon I. Popovic Z. Baker D. Players F. Algorithm discovery by protein folding game players Proceedings of the National Academy of Sciences 2011 108 47 18949 18953 10.1073/pnas.1115898108
  11. 11
    Krallinger M. Rabal O. Leitner F. Vazquez M. Salgado D. Lu Z. Leaman R. Lu Y. Ji D. Lowe D. Sayle R. Batista-Navarro R. Rak R. Huber T. Rocktäschel T. Matos S. Campos D. Tang B. Xu H. Munkhdalai T. Ryu K. Ramanan S. Nathan S. Žitnik S. Bajec M. Weber L. Irmer M. Akhondi S. Kors J. Xu S. An X. Sikdar U. Ekbal A. Yoshioka M. Dieb T. Choi M. Verspoor K. Khabsa M. Giles C. Liu H. Ravikumar K. Lamurias A. Couto F. Dai H. Tsai R. Ata C. Can T. Usié A. Alves R. Segura-Bedmar I. Martínez P. Oyarzabal J. Valencia A. The CHEMDNER corpus of chemicals and drugs and its annotation principles Journal of Cheminformatics 2015 7 Suppl 1 S2 10.1186/1758-2946-7-S1-S2
  12. 12
    Lu Z. PubMed and beyond: A survey of web tools for searching biomedical literature Database 2011 2011 0 baq036 baq036 10.1093/database/baq036
  13. 13
    Michelucci P. Dickinson J. The power of crowds Science 2016 351 6268 32 33 10.1126/science.aad6499
  14. 14
    Mooney R. Bunescu R. Mining knowledge from text using information extraction 2005 SIGKDD Explor. Newsl 7 1 3 10 10.1145/1089815.1089817
  15. 15
    Osada T. Sakaki Y. Takeuchi T. Puromycin-Sensitive Aminopeptidase Gene (Psa) Maps to Mouse Chromosome 11 Genomics 1999 56 3 361 362 10.1006/geno.1998.5724
  16. 16
    Ploos van Amstel H. Reitsma P. Van der Logt C. Bertina R. Intron-exon organization of the active human protein S gene PS.alpha. and its pseudogene PS.beta.: Duplication and silencing during primate evolution Biochemistry 1990 29 34 7853 7861 10.1021/bi00486a011
  17. 17
    PubMed Help National Center For Biotechnology Information (US) 2016 Retrieved from https://www.ncbi.nlm.nih.gov/books/NBK3827/
  18. 18
    Richards J. Lintott C. Machine Learning & Supernovae 2012 Galaxy Zoo [online] Available at: http://blog.galaxyzoo.org/2012/08/03/machine-learning-supernovae/ [Accessed 26 Jan. 2016]
  19. 19
    Saito K. Takagi Y. Ling H. Takahashi H. Noji M. Molecular cloning, characterization and expression of cDNA encoding phosphoserine aminotransferase involved in phosphorylated pathway of serine biosynthesis from spinach Plant Molecular Biology 1997 33 2 359 366 10.1023/A:1005730725764
  20. 20
    Schoels M. Aletaha D. Alasti F. Smolen J. Disease activity in psoriatic arthritis (PsA): defining remission and treatment success using the DAPSA score Annals of the Rheumatic Diseases 2015 75 5 811 818
  21. 21
    Simmons B. Measuring success in citizen science projects, Part 2: Results 2015 Zooniverse [online] Available at: https://blog.zooniverse.org/2015/08/24/measuring-success-in-citizen-science-projects-part-2-results/ [Accessed 10 May 2016]
  22. 22
    Swanson D. Fish oil, Raynaud’s Syndrome, and undiscovered public knowledge Perspectives in Biology and Medicine 1986 30 1 7 18 10.1353/pbm.1986.0087
  23. 23
    Torii M. Arighi C. Li G. Wang Q. Wu C. Vijay-Shanker K. RLIMS-P 2.0: A generalizable rule-based information extraction system for literature mining of protein phosphorylation Information IEEE/ACM Trans. Comput. Biol. and Bioinf 2015 12 1 17 29 10.1109/TCBB.2014.2372765
  24. 24
    Usié A. Cruz J. Comas J. Solsona F. Alves R. CheNER: a tool for the identification of chemical entities and their classes in biomedical literature Journal of Cheminformatics 2015 7 Suppl 1 S15 10.1186/1758-2946-7-S1-S15
  25. 25
    Wiggins A. Citizen Science Data Quality is a Design Problem | Andrea Wiggins 2014 [online] Andreawiggins.com. Available at: http://andreawiggins.com/citizen-science-data-quality-is-a-design-problem/ [Accessed 26 Jan. 2016]
  26. 26
    Wiggins A. Crowston K. From conservation to crowdsourcing: A typology of citizen science 44th Hawaii International Conference on System Sciences 2011 2011 10.1109/HICSS.2011.207
  27. 27
    Wiggins A. Crowston K. Surveying the citizen science landscape First Monday 2014 20 1 10.5210/fm.v20i1.5520
  28. 28
    Woolf-King S. Muyindike W. Hobbs M. Kusasira A. Fatch R. Emenyonu N. Johnson M. Hahn J. Vaginal prostate specific antigen (PSA) is a useful biomarker of semen exposure among HIV-infected Ugandan women AIDS Behav 2016 10.1007/s10461-016-1433-7
DOI: https://doi.org/10.5334/cstp.56 | Journal eISSN: 2057-4991
Language: English
Submitted on: Jan 27, 2016
Accepted on: Jun 16, 2016
Published on: Dec 31, 2016
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2016 Ginger Tsueng, Steven M. Nanis, Jennifer Fouquier, Benjamin M. Good, Andrew I. Su, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.